Result of FASTA (omim) for pF1KE0476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0476, 245 aa
  1>>>pF1KE0476 245 - 245 aa - 245 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5103+/-0.000404; mu= 3.4609+/- 0.025
 mean_var=325.1685+/-67.308, 0's: 0 Z-trim(122.1): 421  B-trim: 649 in 1/57
 Lambda= 0.071125
 statistics sampled from 39324 (39786) to 39324 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.466), width:  16
 Scan time:  6.980

The best scores are:                                      opt bits E(85289)
NP_001107573 (OMIM: 120575,613652) complement C1q  ( 245) 1737 190.9 1.8e-48
NP_758957 (OMIM: 120575,613652) complement C1q sub ( 245) 1737 190.9 1.8e-48
XP_011540361 (OMIM: 120570,613652) PREDICTED: comp ( 253)  816 96.4 5.1e-20
NP_000482 (OMIM: 120570,613652) complement C1q sub ( 253)  816 96.4 5.1e-20
NP_057075 (OMIM: 120550,613652) complement C1q sub ( 245)  539 68.0 1.8e-11
NP_056460 (OMIM: 605670,608752) complement C1q tum ( 243)  524 66.4 5.2e-11
NP_001265360 (OMIM: 605670,608752) complement C1q  ( 243)  524 66.4 5.2e-11
NP_001008224 (OMIM: 615229) complement C1q-like pr ( 238)  439 57.7 2.2e-08
XP_011536572 (OMIM: 615229) PREDICTED: complement  ( 227)  393 52.9 5.5e-07
NP_852100 (OMIM: 612045) complement C1q tumor necr ( 319)  349 48.6 1.6e-05
NP_112207 (OMIM: 612045) complement C1q tumor necr ( 246)  346 48.2 1.6e-05
XP_011533735 (OMIM: 120110,156500) PREDICTED: coll ( 680)  351 49.2 2.1e-05
XP_016865738 (OMIM: 120110,156500) PREDICTED: coll ( 680)  351 49.2 2.1e-05
XP_011533734 (OMIM: 120110,156500) PREDICTED: coll ( 680)  351 49.2 2.1e-05
NP_000484 (OMIM: 120110,156500) collagen alpha-1(X ( 680)  351 49.2 2.1e-05
XP_006715396 (OMIM: 120110,156500) PREDICTED: coll ( 680)  351 49.2 2.1e-05
XP_016865737 (OMIM: 120110,156500) PREDICTED: coll ( 680)  351 49.2 2.1e-05
XP_016884751 (OMIM: 301050,303630) PREDICTED: coll (1289)  338 48.3 7.9e-05
XP_016884750 (OMIM: 301050,303630) PREDICTED: coll (1330)  338 48.3 8.1e-05
XP_016883155 (OMIM: 120270,600969,603932) PREDICTE ( 486)  329 46.8 8.3e-05
XP_011526847 (OMIM: 120270,600969,603932) PREDICTE ( 552)  329 46.9   9e-05
NP_000486 (OMIM: 301050,303630) collagen alpha-5(I (1685)  338 48.4 9.3e-05
XP_016884749 (OMIM: 301050,303630) PREDICTED: coll (1690)  338 48.4 9.3e-05
NP_203699 (OMIM: 301050,303630) collagen alpha-5(I (1691)  338 48.4 9.3e-05
XP_016884748 (OMIM: 301050,303630) PREDICTED: coll (1693)  338 48.4 9.3e-05
NP_065084 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744)  331 47.2 9.3e-05
NP_001841 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744)  331 47.2 9.3e-05
XP_011529151 (OMIM: 301050,303630) PREDICTED: coll (1696)  338 48.4 9.3e-05
XP_016868640 (OMIM: 610026) PREDICTED: collagen al (1552)  337 48.3 9.5e-05
NP_001844 (OMIM: 120270,600969,603932) collagen al ( 684)  329 47.0  0.0001
XP_005257116 (OMIM: 114000,120150,130000,130060,16 (1158)  333 47.7 0.00011
XP_016884752 (OMIM: 301050,303630) PREDICTED: coll (1136)  332 47.6 0.00011
XP_006717371 (OMIM: 608461,615155) PREDICTED: coll (1842)  336 48.3 0.00011
XP_011508874 (OMIM: 120131,203780) PREDICTED: coll (1132)  328 47.2 0.00015
XP_011508871 (OMIM: 120131,203780) PREDICTED: coll (1414)  328 47.3 0.00017
XP_016858789 (OMIM: 120131,203780) PREDICTED: coll (1414)  328 47.3 0.00017
XP_011508872 (OMIM: 120131,203780) PREDICTED: coll (1414)  328 47.3 0.00017
XP_011508870 (OMIM: 120131,203780) PREDICTED: coll (1419)  328 47.3 0.00017
XP_011508869 (OMIM: 120131,203780) PREDICTED: coll (1420)  328 47.3 0.00017
XP_011508868 (OMIM: 120131,203780) PREDICTED: coll (1420)  328 47.3 0.00017
XP_011508867 (OMIM: 120131,203780) PREDICTED: coll (1424)  328 47.3 0.00017
NP_000485 (OMIM: 113811,122400,226650) collagen al (1497)  328 47.3 0.00018
XP_005246339 (OMIM: 120131,203780) PREDICTED: coll (1505)  328 47.3 0.00018
XP_011515191 (OMIM: 610026) PREDICTED: collagen al (1058)  325 46.8 0.00018
XP_016858788 (OMIM: 120131,203780) PREDICTED: coll (1518)  328 47.3 0.00018
XP_016858787 (OMIM: 120131,203780) PREDICTED: coll (1608)  328 47.4 0.00018
XP_011508864 (OMIM: 120131,203780) PREDICTED: coll (1608)  328 47.4 0.00018
XP_011508863 (OMIM: 120131,203780) PREDICTED: coll (1608)  328 47.4 0.00018
XP_011508862 (OMIM: 120131,203780) PREDICTED: coll (1612)  328 47.4 0.00018
XP_011508861 (OMIM: 120131,203780) PREDICTED: coll (1612)  328 47.4 0.00018


>>NP_001107573 (OMIM: 120575,613652) complement C1q subc  (245 aa)
 initn: 1737 init1: 1737 opt: 1737  Z-score: 991.3  bits: 190.9 E(85289): 1.8e-48
Smith-Waterman score: 1737; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
              190       200       210       220       230       240

            
pF1KE0 LLFPD
       :::::
NP_001 LLFPD
            

>>NP_758957 (OMIM: 120575,613652) complement C1q subcomp  (245 aa)
 initn: 1737 init1: 1737 opt: 1737  Z-score: 991.3  bits: 190.9 E(85289): 1.8e-48
Smith-Waterman score: 1737; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
              190       200       210       220       230       240

            
pF1KE0 LLFPD
       :::::
NP_758 LLFPD
            

>>XP_011540361 (OMIM: 120570,613652) PREDICTED: compleme  (253 aa)
 initn: 593 init1: 593 opt: 816  Z-score: 480.4  bits: 96.4 E(85289): 5.1e-20
Smith-Waterman score: 816; 50.0% identity (74.0% similar) in 246 aa overlap (8-245:5-250)

               10        20          30           40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR--GQANTGCYG---IPGMPGLPGAPGKDGYDGLPG
              .:  .. .:.::::: :   .::. .: :   :::.::.::.:: ::  : ::
XP_011    MMMKIPWGSIPVLMLLLLLGLIDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPG
                  10        20        30        40        50       

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
        ::: :.:.. : .:  :.::.::.::.::: :: :: :  : ::  : ::  :: : ::
XP_011 IKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYK
        60        70        80        90       100       110       

         120       130       140       150       160       170     
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
          . .:..::  . :   .. :::. :.:: ...:.  .:::::::::::::.::::  
XP_011 ATQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSR
       120       130       140       150       160       170       

         180          190       200       210       220       230  
pF1KE0 ANLCVLLYRS---GVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQG
       .:::: :.:.   . :::::: .. .: ::..::..:.:. ::.:.: ..:  ...:..:
XP_011 GNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEG
       180       190       200       210       220       230       

            240        
pF1KE0 SDSVFSGFLLFPD   
       ..:.:::::::::   
XP_011 ANSIFSGFLLFPDMEA
       240       250   

>>NP_000482 (OMIM: 120570,613652) complement C1q subcomp  (253 aa)
 initn: 593 init1: 593 opt: 816  Z-score: 480.4  bits: 96.4 E(85289): 5.1e-20
Smith-Waterman score: 816; 50.0% identity (74.0% similar) in 246 aa overlap (8-245:5-250)

               10        20          30           40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR--GQANTGCYG---IPGMPGLPGAPGKDGYDGLPG
              .:  .. .:.::::: :   .::. .: :   :::.::.::.:: ::  : ::
NP_000    MMMKIPWGSIPVLMLLLLLGLIDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPG
                  10        20        30        40        50       

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
        ::: :.:.. : .:  :.::.::.::.::: :: :: :  : ::  : ::  :: : ::
NP_000 IKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYK
        60        70        80        90       100       110       

         120       130       140       150       160       170     
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
          . .:..::  . :   .. :::. :.:: ...:.  .:::::::::::::.::::  
NP_000 ATQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSR
       120       130       140       150       160       170       

         180          190       200       210       220       230  
pF1KE0 ANLCVLLYRS---GVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQG
       .:::: :.:.   . :::::: .. .: ::..::..:.:. ::.:.: ..:  ...:..:
NP_000 GNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEG
       180       190       200       210       220       230       

            240        
pF1KE0 SDSVFSGFLLFPD   
       ..:.:::::::::   
NP_000 ANSIFSGFLLFPDMEA
       240       250   

>>NP_057075 (OMIM: 120550,613652) complement C1q subcomp  (245 aa)
 initn: 464 init1: 169 opt: 539  Z-score: 327.0  bits: 68.0 E(85289): 1.8e-11
Smith-Waterman score: 539; 38.8% identity (63.2% similar) in 242 aa overlap (15-244:8-243)

               10        20        30         40        50         
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTG-CYGIPGMPGLPGAPGKDGYDGLPGPKGE
                     :.: .: . : ....   : .  :  :  : ::. :  :: : .::
NP_057        MEGPRGWLVLCVLAISLASMVTEDLCRAPDGKKGEAGRPGRRGRPGLKGEQGE
                      10        20        30        40        50   

      60         70        80           90       100       110     
pF1KE0 PGIPAI-PGIRGPKGQKGEPGLPGHPGK---NGPMGPPGMPGVPGPMGIPGEPGEEGRYK
       :: :.:  ::.: ::..::::  :.:::    :: :: :  :.::  :  : ::.    :
NP_057 PGAPGIRTGIQGLKGDQGEPGPSGNPGKVGYPGPSGPLGARGIPGIKGTKGSPGN---IK
            60        70        80        90       100          110

         120       130       140       150       160       170     
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
       .. . .:.. :.  .::  .... :..:.:: .  :.. .:.:.: ::: :::....   
NP_057 DQPRPAFSAIRR--NPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQ
              120         130       140       150       160        

         180           190        200       210       220       230
pF1KE0 ANLCVLLYRSGV----KVVTFCGHTSK-TNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
        ..:. .  :.     . . ::  :.:   :: :::..:.:: :..::.  .     .  
NP_057 WEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHI-Y
      170       180       190       200       210       220        

                240      
pF1KE0 QGS--DSVFSGFLLFPD 
       :::  ::::::::.::  
NP_057 QGSEADSVFSGFLIFPSA
       230       240     

>>NP_056460 (OMIM: 605670,608752) complement C1q tumor n  (243 aa)
 initn: 627 init1: 256 opt: 524  Z-score: 318.7  bits: 66.4 E(85289): 5.2e-11
Smith-Waterman score: 533; 41.1% identity (62.6% similar) in 246 aa overlap (13-245:1-235)

               10        20         30            40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR-GQANTGCYGIP----GMPGLPGAPGKDGYDGLPG
                   .. ::.:::: :  :.       ::    : :::::.::. : .::::
NP_056             MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPG
                           10        20        30        40        

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
         :. :  . ::  : ::. :.:::::      : : ::  :  :: :  :  :: .   
NP_056 RDGRDGRDGAPGAPGEKGEGGRPGLPG------PRGDPGPRGEAGPAGPTGPAGECSVPP
       50        60        70              80        90       100  

         120        130       140       150       160       170    
pF1KE0 QKFQSVFTVTR-QTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHAS-
       .   :.:.. : ... ::  .. . :. ::.: :: ::. ::::::.:::.:::. ::. 
NP_056 R---SAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATV
               110       120       130       140       150         

           180       190          200       210       220       230
pF1KE0 HTANLCVLLYRSGVKVVTFC---GHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
       . :.:   : ..: ....:    :   :  .. :::...::.  ..::. :.   :..::
NP_056 YRASLQFDLVKNGESIASFFQFFGGWPKPASL-SGGAMVRLEPEDQVWVQVG-VGDYIGI
     160       170       180       190        200       210        

                 240             
pF1KE0 QGS---DSVFSGFLLFPD        
        .:   ::.:::::.. :        
NP_056 YASIKTDSTFSGFLVYSDWHSSPVFA
       220       230       240   

>>NP_001265360 (OMIM: 605670,608752) complement C1q tumo  (243 aa)
 initn: 627 init1: 256 opt: 524  Z-score: 318.7  bits: 66.4 E(85289): 5.2e-11
Smith-Waterman score: 533; 41.1% identity (62.6% similar) in 246 aa overlap (13-245:1-235)

               10        20         30            40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR-GQANTGCYGIP----GMPGLPGAPGKDGYDGLPG
                   .. ::.:::: :  :.       ::    : :::::.::. : .::::
NP_001             MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPG
                           10        20        30        40        

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
         :. :  . ::  : ::. :.:::::      : : ::  :  :: :  :  :: .   
NP_001 RDGRDGRDGAPGAPGEKGEGGRPGLPG------PRGDPGPRGEAGPAGPTGPAGECSVPP
       50        60        70              80        90       100  

         120        130       140       150       160       170    
pF1KE0 QKFQSVFTVTR-QTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHAS-
       .   :.:.. : ... ::  .. . :. ::.: :: ::. ::::::.:::.:::. ::. 
NP_001 R---SAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATV
               110       120       130       140       150         

           180       190          200       210       220       230
pF1KE0 HTANLCVLLYRSGVKVVTFC---GHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
       . :.:   : ..: ....:    :   :  .. :::...::.  ..::. :.   :..::
NP_001 YRASLQFDLVKNGESIASFFQFFGGWPKPASL-SGGAMVRLEPEDQVWVQVG-VGDYIGI
     160       170       180       190        200       210        

                 240             
pF1KE0 QGS---DSVFSGFLLFPD        
        .:   ::.:::::.. :        
NP_001 YASIKTDSTFSGFLVYSDWHSSPVFA
       220       230       240   

>>NP_001008224 (OMIM: 615229) complement C1q-like protei  (238 aa)
 initn: 295 init1: 295 opt: 439  Z-score: 271.7  bits: 57.7 E(85289): 2.2e-08
Smith-Waterman score: 439; 34.3% identity (60.7% similar) in 242 aa overlap (15-245:2-238)

               10        20             30        40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPL-----RGQANTGCYGIPGMPGLPGAPGKDGYDGLPG
                     .::::. .::     :: :.    :   :   : .:   : ::  .
NP_001              MVLLLLVAIPLLVHSSRGPAHYEMLGRCRMVCDPHGPRGPGPDG--A
                            10        20        30        40       

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
       : . : .:  :: .:  :..:. :: : ::  :: :::: :: ::: : :: ::  :   
NP_001 PASVPPFP--PGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPG-PGPGGVAP
          50          60        70        80        90        100  

          120       130       140       150       160       170    
pF1KE0 QK-FQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHA--
          .   ..     ..:     ..::. :.::  . :....::::: .::.:.:.::.  
NP_001 AAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLM
            110       120       130       140       150       160  

              180        190       200       210       220         
pF1KE0 --SHTANLCVLLYRSG-VKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVG
         .  ... . :...: :.. ..   .... .  :..:.:.:.::.::.. ..      :
NP_001 RGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGG
            170       180       190       200       210       220  

     230       240     
pF1KE0 IQGSDSVFSGFLLFPD
         .. :.::::...::
NP_001 NTNKYSTFSGFIIYPD
            230        

>>XP_011536572 (OMIM: 615229) PREDICTED: complement C1q-  (227 aa)
 initn: 295 init1: 295 opt: 393  Z-score: 246.4  bits: 52.9 E(85289): 5.5e-07
Smith-Waterman score: 393; 34.2% identity (60.7% similar) in 219 aa overlap (15-222:2-215)

               10        20             30        40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPL-----RGQANTGCYGIPGMPGLPGAPGKDGYDGLPG
                     .::::. .::     :: :.    :   :   : .:   : ::  .
XP_011              MVLLLLVAIPLLVHSSRGPAHYEMLGRCRMVCDPHGPRGPGPDG--A
                            10        20        30        40       

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
       : . : .:  :: .:  :..:. :: : ::  :: :::: :: ::: : :: ::  :   
XP_011 PASVPPFP--PGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPG-PGPGGVAP
          50          60        70        80        90        100  

          120       130       140       150       160       170    
pF1KE0 QK-FQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHA--
          .   ..     ..:     ..::. :.::  . :....::::: .::.:.:.::.  
XP_011 AAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLM
            110       120       130       140       150       160  

              180        190       200       210       220         
pF1KE0 --SHTANLCVLLYRSG-VKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVG
         .  ... . :...: :.. ..   .... .  :..:.:.:.::.::.. ..       
XP_011 RGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGG
            170       180       190       200       210       220  

     230       240     
pF1KE0 IQGSDSVFSGFLLFPD
                       
XP_011 NTNKV           
                       

>>NP_852100 (OMIM: 612045) complement C1q tumor necrosis  (319 aa)
 initn: 425 init1: 198 opt: 349  Z-score: 220.4  bits: 48.6 E(85289): 1.6e-05
Smith-Waterman score: 349; 33.5% identity (56.5% similar) in 248 aa overlap (5-243:81-316)

                                         10        20         30   
pF1KE0                           MDVGPSSLPHLGLKLLLLLLLLPLRGQA-NTGCY
                                     :. :::   ..  :  .  . ::. .::  
NP_852 GSRREKVRERSHPKTGTVDNNTSTDLKSLRPDELPHP--EVDDLAQITTFWGQSPQTG--
               60        70        80          90       100        

            40            50        60        70        80         
pF1KE0 GIPGMPGLPGAPGKD----GYDGLPGPKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGP
       :.:  :        :    ::.: ::: : ::::.  :  : .:  :. :  :. : .: 
NP_852 GLP--PDCSKCCHGDYSFRGYQGPPGPPGPPGIPGNHGNNGNNGATGHEGAKGEKGDKGD
          110       120       130       140       150       160    

      90       100       110       120       130       140         
pF1KE0 MGPPGMPGVPGPMGIPGEPGEEGRYKQKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQG
       .:: :  :  :: :  : ::       ..: .: ..  ::     :: : :..: ::  .
NP_852 LGPRGERGQHGPKGEKGYPG----IPPELQIAFMASLATHFS-NQNSGIIFSSVETNIGN
          170       180           190       200        210         

     150       160       170          180       190        200     
pF1KE0 DYDTSTGKFTCKVPGLYYFVYHA-SH--TANLCVLLYRSGVKVVTFCGHTSK-TNQVNSG
        .:. ::.:   : :.:.:..   .:  . .. : :...:  : .. ..  :  ....:.
NP_852 FFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEVYVYLMHNGNTVFSMYSYEMKGKSDTSSN
     220       230       240       250       260       270         

         210       220       230       240      
pF1KE0 GVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPD 
        ..:.:  :.:::: ...   . : .   :.:.:::::   
NP_852 HAVLKLAKGDEVWLRMGNGA-LHGDHQRFSTFAGFLLFETK
     280       290        300       310         




245 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:34:17 2016 done: Thu Nov  3 05:34:18 2016
 Total Scan time:  6.980 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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