Result of FASTA (ccds) for pF1KE0476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0476, 245 aa
  1>>>pF1KE0476 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7382+/-0.00101; mu= 1.9476+/- 0.061
 mean_var=286.9779+/-58.846, 0's: 0 Z-trim(114.9): 134  B-trim: 367 in 1/52
 Lambda= 0.075709
 statistics sampled from 15349 (15491) to 15349 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.476), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS227.1 C1QC gene_id:714|Hs108|chr1              ( 245) 1737 202.0   3e-52
CCDS228.1 C1QB gene_id:713|Hs108|chr1              ( 253)  816 101.5 5.8e-22
CCDS226.1 C1QA gene_id:712|Hs108|chr1              ( 245)  539 71.2 7.3e-13
CCDS8420.1 C1QTNF5 gene_id:114902|Hs108|chr11      ( 243)  524 69.5 2.3e-12


>>CCDS227.1 C1QC gene_id:714|Hs108|chr1                   (245 aa)
 initn: 1737 init1: 1737 opt: 1737  Z-score: 1051.6  bits: 202.0 E(32554): 3e-52
Smith-Waterman score: 1737; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 GIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGF
              190       200       210       220       230       240

            
pF1KE0 LLFPD
       :::::
CCDS22 LLFPD
            

>>CCDS228.1 C1QB gene_id:713|Hs108|chr1                   (253 aa)
 initn: 593 init1: 593 opt: 816  Z-score: 507.8  bits: 101.5 E(32554): 5.8e-22
Smith-Waterman score: 816; 50.0% identity (74.0% similar) in 246 aa overlap (8-245:5-250)

               10        20          30           40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR--GQANTGCYG---IPGMPGLPGAPGKDGYDGLPG
              .:  .. .:.::::: :   .::. .: :   :::.::.::.:: ::  : ::
CCDS22    MMMKIPWGSIPVLMLLLLLGLIDISQAQLSCTGPPAIPGIPGIPGTPGPDGQPGTPG
                  10        20        30        40        50       

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
        ::: :.:.. : .:  :.::.::.::.::: :: :: :  : ::  : ::  :: : ::
CCDS22 IKGEKGLPGLAGDHGEFGEKGDPGIPGNPGKVGPKGPMGPKGGPGAPGAPGPKGESGDYK
        60        70        80        90       100       110       

         120       130       140       150       160       170     
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
          . .:..::  . :   .. :::. :.:: ...:.  .:::::::::::::.::::  
CCDS22 ATQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSR
       120       130       140       150       160       170       

         180          190       200       210       220       230  
pF1KE0 ANLCVLLYRS---GVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQG
       .:::: :.:.   . :::::: .. .: ::..::..:.:. ::.:.: ..:  ...:..:
CCDS22 GNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEG
       180       190       200       210       220       230       

            240        
pF1KE0 SDSVFSGFLLFPD   
       ..:.:::::::::   
CCDS22 ANSIFSGFLLFPDMEA
       240       250   

>>CCDS226.1 C1QA gene_id:712|Hs108|chr1                   (245 aa)
 initn: 464 init1: 169 opt: 539  Z-score: 344.4  bits: 71.2 E(32554): 7.3e-13
Smith-Waterman score: 539; 38.8% identity (63.2% similar) in 242 aa overlap (15-244:8-243)

               10        20        30         40        50         
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLRGQANTG-CYGIPGMPGLPGAPGKDGYDGLPGPKGE
                     :.: .: . : ....   : .  :  :  : ::. :  :: : .::
CCDS22        MEGPRGWLVLCVLAISLASMVTEDLCRAPDGKKGEAGRPGRRGRPGLKGEQGE
                      10        20        30        40        50   

      60         70        80           90       100       110     
pF1KE0 PGIPAI-PGIRGPKGQKGEPGLPGHPGK---NGPMGPPGMPGVPGPMGIPGEPGEEGRYK
       :: :.:  ::.: ::..::::  :.:::    :: :: :  :.::  :  : ::.    :
CCDS22 PGAPGIRTGIQGLKGDQGEPGPSGNPGKVGYPGPSGPLGARGIPGIKGTKGSPGN---IK
            60        70        80        90       100          110

         120       130       140       150       160       170     
pF1KE0 QKFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT
       .. . .:.. :.  .::  .... :..:.:: .  :.. .:.:.: ::: :::....   
CCDS22 DQPRPAFSAIRR--NPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQ
              120         130       140       150       160        

         180           190        200       210       220       230
pF1KE0 ANLCVLLYRSGV----KVVTFCGHTSK-TNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
        ..:. .  :.     . . ::  :.:   :: :::..:.:: :..::.  .     .  
CCDS22 WEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHI-Y
      170       180       190       200       210       220        

                240      
pF1KE0 QGS--DSVFSGFLLFPD 
       :::  ::::::::.::  
CCDS22 QGSEADSVFSGFLIFPSA
       230       240     

>>CCDS8420.1 C1QTNF5 gene_id:114902|Hs108|chr11           (243 aa)
 initn: 627 init1: 256 opt: 524  Z-score: 335.6  bits: 69.5 E(32554): 2.3e-12
Smith-Waterman score: 533; 41.1% identity (62.6% similar) in 246 aa overlap (13-245:1-235)

               10        20         30            40        50     
pF1KE0 MDVGPSSLPHLGLKLLLLLLLLPLR-GQANTGCYGIP----GMPGLPGAPGKDGYDGLPG
                   .. ::.:::: :  :.       ::    : :::::.::. : .::::
CCDS84             MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPG
                           10        20        30        40        

          60        70        80        90       100       110     
pF1KE0 PKGEPGIPAIPGIRGPKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYK
         :. :  . ::  : ::. :.:::::      : : ::  :  :: :  :  :: .   
CCDS84 RDGRDGRDGAPGAPGEKGEGGRPGLPG------PRGDPGPRGEAGPAGPTGPAGECSVPP
       50        60        70              80        90       100  

         120        130       140       150       160       170    
pF1KE0 QKFQSVFTVTR-QTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHAS-
       .   :.:.. : ... ::  .. . :. ::.: :: ::. ::::::.:::.:::. ::. 
CCDS84 R---SAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVTGKFTCQVPGVYYFAVHATV
               110       120       130       140       150         

           180       190          200       210       220       230
pF1KE0 HTANLCVLLYRSGVKVVTFC---GHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGI
       . :.:   : ..: ....:    :   :  .. :::...::.  ..::. :.   :..::
CCDS84 YRASLQFDLVKNGESIASFFQFFGGWPKPASL-SGGAMVRLEPEDQVWVQVG-VGDYIGI
     160       170       180       190        200       210        

                 240             
pF1KE0 QGS---DSVFSGFLLFPD        
        .:   ::.:::::.. :        
CCDS84 YASIKTDSTFSGFLVYSDWHSSPVFA
       220       230       240   




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 05:34:17 2016 done: Thu Nov  3 05:34:17 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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