Result of FASTA (omim) for pF1KE0411
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0411, 311 aa
  1>>>pF1KE0411 311 - 311 aa - 311 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1432+/-0.000407; mu= 16.0850+/- 0.025
 mean_var=62.8503+/-13.289, 0's: 0 Z-trim(111.1): 15  B-trim: 508 in 1/51
 Lambda= 0.161778
 statistics sampled from 19605 (19615) to 19605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.58), E-opt: 0.2 (0.23), width:  16
 Scan time:  7.110

The best scores are:                                      opt bits E(85289)
NP_057559 (OMIM: 611176) JNK1/MAPK8-associated mem ( 311) 2098 498.5 6.9e-141
NP_001271130 (OMIM: 611176) JNK1/MAPK8-associated  ( 325) 2089 496.4 3.1e-140
NP_001092095 (OMIM: 611176) JNK1/MAPK8-associated  ( 305) 2051 487.6 1.4e-137
NP_001271131 (OMIM: 611176) JNK1/MAPK8-associated  ( 319) 2046 486.4 3.2e-137
NP_001271132 (OMIM: 611176) JNK1/MAPK8-associated  ( 248) 1632 389.7 3.2e-108
NP_001271133 (OMIM: 611176) JNK1/MAPK8-associated  ( 213) 1471 352.1 5.7e-97
XP_006720234 (OMIM: 611176) PREDICTED: JNK1/MAPK8- ( 227) 1462 350.0 2.6e-96
XP_016876855 (OMIM: 611176) PREDICTED: JNK1/MAPK8- ( 207) 1424 341.1 1.1e-93


>>NP_057559 (OMIM: 611176) JNK1/MAPK8-associated membran  (311 aa)
 initn: 2098 init1: 2098 opt: 2098  Z-score: 2650.3  bits: 498.5 E(85289): 6.9e-141
Smith-Waterman score: 2098; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
              250       260       270       280       290       300

              310 
pF1KE0 SRILSEGANGH
       :::::::::::
NP_057 SRILSEGANGH
              310 

>>NP_001271130 (OMIM: 611176) JNK1/MAPK8-associated memb  (325 aa)
 initn: 2089 init1: 2089 opt: 2089  Z-score: 2638.7  bits: 496.4 E(85289): 3.1e-140
Smith-Waterman score: 2089; 99.4% identity (100.0% similar) in 311 aa overlap (1-311:15-325)

                             10        20        30        40      
pF1KE0               MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
                     ..::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKGEIQQSLGAWVLLTVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KE0 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KE0 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KE0 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KE0 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT
              250       260       270       280       290       300

        290       300       310 
pF1KE0 PALFYLFTAKFTEPSRILSEGANGH
       :::::::::::::::::::::::::
NP_001 PALFYLFTAKFTEPSRILSEGANGH
              310       320     

>>NP_001092095 (OMIM: 611176) JNK1/MAPK8-associated memb  (305 aa)
 initn: 2051 init1: 2051 opt: 2051  Z-score: 2591.2  bits: 487.6 E(85289): 1.4e-137
Smith-Waterman score: 2051; 100.0% identity (100.0% similar) in 304 aa overlap (8-311:2-305)

               10        20        30        40        50        60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001       MACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
          180       190       200       210       220       230    

              250       260       270       280       290       300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP
          240       250       260       270       280       290    

              310 
pF1KE0 SRILSEGANGH
       :::::::::::
NP_001 SRILSEGANGH
          300     

>>NP_001271131 (OMIM: 611176) JNK1/MAPK8-associated memb  (319 aa)
 initn: 2046 init1: 2046 opt: 2046  Z-score: 2584.6  bits: 486.4 E(85289): 3.2e-137
Smith-Waterman score: 2046; 100.0% identity (100.0% similar) in 303 aa overlap (9-311:17-319)

                       10        20        30        40        50  
pF1KE0         MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTES
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKGEIQQSLGAWVLLTCLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTES
               10        20        30        40        50        60

             60        70        80        90       100       110  
pF1KE0 PELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPV
               70        80        90       100       110       120

            120       130       140       150       160       170  
pF1KE0 GVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLR
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KE0 PLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVY
              190       200       210       220       230       240

            240       250       260       270       280       290  
pF1KE0 MSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYL
              250       260       270       280       290       300

            300       310 
pF1KE0 FTAKFTEPSRILSEGANGH
       :::::::::::::::::::
NP_001 FTAKFTEPSRILSEGANGH
              310         

>>NP_001271132 (OMIM: 611176) JNK1/MAPK8-associated memb  (248 aa)
 initn: 1632 init1: 1632 opt: 1632  Z-score: 2064.0  bits: 389.7 E(85289): 3.2e-108
Smith-Waterman score: 1632; 100.0% identity (100.0% similar) in 248 aa overlap (64-311:1-248)

            40        50        60        70        80        90   
pF1KE0 CPRGQRTNAQKYCQPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHIT
                                     ::::::::::::::::::::::::::::::
NP_001                               MAMLPLVLHWFFIEWYSGKKSSSALFQHIT
                                             10        20        30

           100       110       120       130       140       150   
pF1KE0 ALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALFECSMAAIITLLVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPL
               40        50        60        70        80        90

           160       170       180       190       200       210   
pF1KE0 YTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTIVFIYYAFCLVLMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL
              100       110       120       130       140       150

           220       230       240       250       260       270   
pF1KE0 YYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYAFPYIILVLSLVTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDK
              160       170       180       190       200       210

           280       290       300       310 
pF1KE0 LEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH
       ::::::::::::::::::::::::::::::::::::::
NP_001 LEQDLPLLALVPTPALFYLFTAKFTEPSRILSEGANGH
              220       230       240        

>>NP_001271133 (OMIM: 611176) JNK1/MAPK8-associated memb  (213 aa)
 initn: 1471 init1: 1471 opt: 1471  Z-score: 1861.9  bits: 352.1 E(85289): 5.7e-97
Smith-Waterman score: 1471; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)

               10        20        30        40        50        60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
       :::::::::::::::::::::::::::::::::                           
NP_001 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL                           
              190       200       210                              

              250       260       270       280       290       300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP

>>XP_006720234 (OMIM: 611176) PREDICTED: JNK1/MAPK8-asso  (227 aa)
 initn: 1462 init1: 1462 opt: 1462  Z-score: 1850.1  bits: 350.0 E(85289): 2.6e-96
Smith-Waterman score: 1462; 99.1% identity (100.0% similar) in 213 aa overlap (1-213:15-227)

                             10        20        30        40      
pF1KE0               MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
                     ..::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKGEIQQSLGAWVLLTVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYC
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KE0 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QPCTESPELYDWLYLGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITL
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KE0 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LVSDPVGVLYIRSCRVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLV
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KE0 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSL
       :::::::::::::::::::::::::::::::::::::::::::::::             
XP_006 LMMLLRPLLVKKIACGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL             
              190       200       210       220                    

        230       240       250       260       270       280      
pF1KE0 VTLAVYMSASEIENCYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPT

>>XP_016876855 (OMIM: 611176) PREDICTED: JNK1/MAPK8-asso  (207 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 1802.8  bits: 341.1 E(85289): 1.1e-93
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 206 aa overlap (8-213:2-207)

               10        20        30        40        50        60
pF1KE0 MAVDIQPACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016       MACLGLYCGKTLLFKNGSTEIYGECGVCPRGQRTNAQKYCQPCTESPELYDWLY
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KE0 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LGFMAMLPLVLHWFFIEWYSGKKSSSALFQHITALFECSMAAIITLLVSDPVGVLYIRSC
           60        70        80        90       100       110    

              130       140       150       160       170       180
pF1KE0 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVLMLSDWYTMLYNPSPDYVTTVHCTHEAVYPLYTIVFIYYAFCLVLMMLLRPLLVKKIA
          120       130       140       150       160       170    

              190       200       210       220       230       240
pF1KE0 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLLYYAFPYIILVLSLVTLAVYMSASEIEN
       :::::::::::::::::::::::::::::::::                           
XP_016 CGLGKSDRFKSIYAALYFFPILTVLQAVGGGLL                           
          180       190       200                                  

              250       260       270       280       290       300
pF1KE0 CYDLLVRKKRLIVLFSHWLLHAYGIISISRVDKLEQDLPLLALVPTPALFYLFTAKFTEP




311 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 11:48:29 2016 done: Thu Nov  3 11:48:30 2016
 Total Scan time:  7.110 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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