GENSCAN 1.0	Date run:  3-Nov-116	Time: 07:44:55

Sequence gi568815586r:110353037_110568203 : 215167 bp : 44.37% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Sngl +   1820   2005  186  1  0   85   39   144 0.667   4.28
 1.02 PlyA +   2049   2054    6                               1.05

 2.35 PlyA -   6817   6812    6                               1.05
 2.34 Term -  17387  17188  200  0  2  -22   37   168 0.509  -1.74
 2.33 Intr -  18120  17896  225  1  0  112   71    80 0.601   6.66
 2.32 Intr -  19161  19043  119  2  2   76   70    25 0.166  -0.39
 2.31 Intr -  21297  21112  186  2  0  110   45   316 0.298  28.30
 2.30 Intr -  23180  23030  151  0  1  107  102   103 0.999  12.82
 2.29 Intr -  24581  24357  225  0  0  105   83   101 0.959   9.26
 2.28 Intr -  28912  28716  197  0  2  108  116    41 0.989   7.96
 2.27 Intr -  29924  29807  118  0  1  124   51    94 0.566   8.82
 2.26 Intr -  33433  33291  143  0  2   -2  115    69 0.917   0.60
 2.25 Intr -  34856  34703  154  0  1   87   85    56 0.659   4.33
 2.24 Intr -  35587  35476  112  1  1   66   48    70 0.729   0.75
 2.23 Intr -  42184  42065  120  1  0   46  106    52 0.913   3.49
 2.22 Intr -  43394  43230  165  2  0   73   91    84 0.547   7.36
 2.21 Intr -  48422  48317  106  1  1   57   81    44 0.512   0.82
 2.20 Intr -  50784  50491  294  2  0   29   86   234 0.587  13.42
 2.19 Intr -  52572  52440  133  1  1   84   74    40 0.625   1.90
 2.18 Intr -  52935  52825  111  1  0   79   91    34 0.677   3.15
 2.17 Intr -  55499  55418   82  2  1   75  115    66 0.944   7.21
 2.16 Intr -  83168  83074   95  0  2   60  116    30 0.906   2.68
 2.15 Intr -  83647  83521  127  1  1   77   95    41 0.980   3.95
 2.14 Intr -  84116  84048   69  2  0  120   86   -20 0.562   0.38
 2.13 Intr -  87352  87276   77  2  2   77   94   140 0.995  12.73
 2.12 Intr -  92515  92416  100  1  1   77   89    21 0.518   0.78
 2.11 Intr - 100835 100707  129  2  0   38   86   139 0.995   9.59
 2.10 Intr - 102646 102550   97  0  1   70  107    61 0.997   6.21
 2.09 Intr - 102894 102779  116  0  2   96   81   104 0.991   9.75
 2.08 Intr - 104598 104474  125  1  2   47   47    74 0.890  -0.50
 2.07 Intr - 106826 106659  168  0  0   76   68   210 0.929  17.72
 2.06 Intr - 112178 112070  109  2  1   83  119   163 0.619  18.76
 2.05 Intr - 115951 115691  261  1  0   58   52   225 0.455  13.58
 2.04 Intr - 139086 138999   88  2  1  104    9    66 0.008   0.27
 2.03 Intr - 140195 139960  236  2  2   60   92   121 0.911   6.19
 2.02 Intr - 143167 142976  192  1  0   23   49   151 0.135   4.39
 2.01 Init - 149312 149253   60  2  0   81   49    86 0.059   5.48
 2.00 Prom - 151627 151588   40                              -2.06

 3.00 Prom + 152256 152295   40                              -3.86
 3.01 Init + 165180 165187    8  2  2   40  103     0 0.317  -2.87
 3.02 Intr + 166758 166880  123  0  0   69  116    36 0.793   4.20
 3.03 Intr + 169141 169375  235  1  1   73   93    67 0.825   3.39
 3.04 Term + 174336 174485  150  2  0  103   53    77 0.759   3.61
 3.05 PlyA + 174607 174612    6                               1.05

 4.06 PlyA - 177951 177946    6                               1.05
 4.05 Term - 184059 184001   59  1  2   97   37    61 0.700  -0.25
 4.04 Intr - 185237 185108  130  2  1   72   99   114 0.997  11.17
 4.03 Intr - 186909 186786  124  2  1  106   86   119 0.779  14.09
 4.02 Intr - 193042 192844  199  2  1   59   89   177 0.997  13.31
 4.01 Intr - 198932 198753  180  0  0  101  123    22 0.887   6.84

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  75805  75961  157  0  1   80   53   130 0.805   8.85
S.002 Term -  82181  82119   63  2  0   72   49    42 0.834  -3.41
S.003 Init - 107344 107317   28  1  1   34   89     1 0.855  -5.44
S.004 Sngl + 107952 108200  249  2  0   75   41   356 0.997  24.68
S.005 Term - 111503 111493   11  0  2  108   40    12 0.925  -3.24
S.006 Intr + 133289 133390  102  1  0   95   32   101 0.836   5.57
S.007 Term + 133498 133668  171  0  0   58   54    93 0.825   0.73
S.008 Term - 139086 138969  118  2  1  104   42    71 0.966   2.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:110353037_110568203|GENSCAN_predicted_peptide_1|61_aa
MADSRDGTENVQYVPEEYQSTRKEGLKNSNQRCGYVKGTQEPTEKATTAEECEQQNKAVL
D

>gi568815586r:110353037_110568203|GENSCAN_predicted_CDS_1|186_bp
atggctgattctagagatgggacagaaaacgtacagtacgtgcctgaagaataccaaagc
accagaaaggaagggctcaaaaacagcaatcaaagatgtggttatgtgaaaggaacacag
gagccaactgaaaaagccacaacagccgaagaatgtgagcaacaaaataaagcagtattg
gactag

>gi568815586r:110353037_110568203|GENSCAN_predicted_peptide_2|1629_aa
MAAIRPKKQARKARLSSTAQLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLC
TKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLAL
LQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVV
TYVYQLIGDDVKRAALQKSYAPSSRTPDPGRASPRRRDREPCAGAAVPASLPRQHACVRL
LVFRRGGSDAGFSPLRSRSDTARTASGERGGQIRDPGVTSTYCATMVQHCEALNRSVQVV
NLDPAAEHFNYSVMADIRELIEVDDVMEDDSLRFGPNGGLVFCMEYFANNFDWLENCLGH
VEDDYILFDCPGQIELYTHLPVMKQLVQQLEQWEFRVCGVFLVDSQFMVESFKFISGILA
ALSAMISLEIPQVNIMTKMDLLSKKAKKEIEKFLDPDMYSLLEDSTSDLRSKKFKKLTKA
ICGLIDDYSMVRFLPYDQSDEESMNIVLQHIDFAIQYGEDLEFKEPKAYHSSLMDPDTKL
IGNMALLPIRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYI
SECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQ
LRQETGLRLCEKVFDPQNDKPSKWLKTDTARSPRKPTGPSQTLWVTLTVEGKVEWTNGLL
KTHLTKLSLQLKKDSVKDRAPKLTNQAGSHTPPPIPLEAALKNIAHYLSIPPPKIFAAAT
LYDYFVLFFLLTTTTGAGTRVSFYSGTSVVTSCLGVVPRVDPMDPGDAAILESSLRILYR
LFESVLPPLPAALQSRMNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPTLGYSHFSTL
RITHQLKAQWLCAISTHMLIECVEEKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL
SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPK
INMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTV
PNLDWLSVWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNS
VLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSF
YSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCY
EGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALT
QRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMD
QYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWA
DQEQWFGMHPAESPCALQAPAAQHLLGRILILCSSSPRVTARLEEAAEGVPWKSIEKPAR
GELEVPNSCRPDPRGPLGVNSAAVRGWEEPASKGLTCGFLRSQPYTGLPVAGQGLRGAAS
QSLGGTTTVENSLAIQKFKQYYYPRIQCSTSGCTPEEVKAGTPKDCTSMSTQHCPQQQKV
ETTHVSLDE

>gi568815586r:110353037_110568203|GENSCAN_predicted_CDS_2|4890_bp
atggctgccatccgccctaaaaagcaggctcggaaggcgcgcctcagctcgacggcccag
ttggtgttggtattaggagatctgcacatcccacaccggtgcaacagtttgccagctaaa
ttcaaaaaactcctggtgccaggaaaaattcagcacattctctgcacaggaaacctttgc
accaaagagagttatgactatctcaagactctggctggtgatgttcatattgtgagagga
gacttcgatgagaatctgaattatccagaacagaaagttgtgactgttggacagttcaaa
attggtctgatccatggacatcaagttattccatggggagatatggccagcttagccctg
ttgcagaggcaatttgatgtggacattcttatctcgggacacacacacaaatttgaagca
tttgagcatgaaaataaattctacattaatccaggttctgccactggggcatataatgcc
ttggaaacaaacattattccatcatttgtgttgatggatatccaggcttctacagtggtc
acctatgtgtatcagctaattggagatgatgtgaaacgggcggctctgcagaagagctac
gctccgtccagtcggaccccggaccctggccgggcatctccgcggcgccgagaccgcgag
ccgtgtgcgggagcagctgtcccagcatccctcccccgacagcacgcgtgcgtcaggctg
ctggtattccggagaggcggctcggatgctggcttctcgcccctccgaagccgttcggac
actgcccgaacagcttcgggagagcggggcgggcagatccgcgaccccggagttacgagc
acctactgtgccaccatggtccagcactgtgaagccctcaaccggtctgtccaagttgta
aacctggatccagcagcagaacacttcaactactccgtgatggctgacatccgggaactg
atcgaggtggatgatgtaatggaggatgattctctgcgattcggtcccaacggaggattg
gtattttgcatggagtactttgccaataattttgactggctggagaactgtcttggccat
gtagaggacgactatatcctttttgattgtccaggtcagattgagttgtacactcacctg
cctgtgatgaaacagctggtccagcagctcgagcagtgggagttccgagtctgtggagtt
tttcttgttgattctcagttcatggtggagtcattcaagtttatttctggcatcttggca
gccctgagtgccatgatctctctagaaattccgcaagtcaacatcatgacaaaaatggat
ctgctgagtaaaaaagcaaaaaaggaaattgagaaatttttagatccagacatgtattct
ttattagaagattctacaagtgacttaagaagcaaaaaattcaagaaactgactaaagct
atatgtggactgattgatgactacagcatggttcgatttttaccttacgatcagtcagat
gaagaaagcatgaacattgtattgcagcatattgattttgccattcaatatggagaagac
ctagaatttaaagaaccaaaggcttaccactcttctctcatggatcctgataccaaactc
atcggaaacatggcactgttgcctatcagaagtcaattcaaaggacctgcccccagagag
acaaaagatacagatattgtggatgaagccatctattacttcaaggccaatgtcttcttc
aaaaactatgaaattaagaatgaagctgataggaccttgatatatataactctctacatt
tctgaatgtctgaagaaactgcaaaagtgcaattccaaaagccaaggtgagaaagaaatg
tatacgctgggaatcactaattttcccattcctggagagcctggttttccacttaacgca
atttatgccaaacctgcaaacaaacaggaagatgaagtgatgagagcctatttacaacag
ctaaggcaagagactggactgagactttgtgagaaagttttcgaccctcagaatgataaa
cccagcaagtggctgaagactgacactgcccgatcacctcggaagcctacaggaccatca
cagacgctttgggtaactcttacagtggaaggaaaggtagaatggactaatggtctttta
aaaacacacctcaccaagctcagcctccaacttaaaaaggactctgtcaaggatagagcc
ccaaaactcaccaaccaagcaggttcccacacaccacccccaatcccacttgaagcagcc
ctgaaaaacatcgcccattatctctccataccacccccaaaaattttcgctgccgcaaca
ctttacgactatttcgttttattcttcttgttaacgaccacgacaggagcagggactcga
gtttctttttattcgggcacttcagtagttacctcttgcttgggggtggtgccgcgtgtg
gacccgatggaccccggcgacgccgccattttggagtcttccctaaggatcctctaccgg
cttttcgagtcagtgctgccgccgctgcccgcggctttgcagagcaggatgaatgtgata
gaccacgtgcgggacatggcggccgcggggctgcactccaacgtgcggctcctcagcagc
ttgttacttacaatgagtaataacaacccgactctcgggtactcccacttttctaccctt
cgcatcacccaccaattgaaagcgcagtggctgtgcgcaataagcactcacatgcttatt
gagtgtgttgaggaaaagtaccagcttttggtgtatcatgcagattctctctttcatgat
aaggaatatcggaatgctgtgagtaagtataccatggctttacagcagaagaaagcgcta
agtaaaacttcaaaagtgagaccttcaactggaaattctgcatctactccacaaagtcag
tgtcttccatctgaaattgaagtgaaatacaaaatggctgaatgttatacaatgctaaaa
caagataaagatgccattgctatacttgatgggatcccttcaagacaaagaactcccaaa
ataaacatgatgctggcaaacctgtacaagaaggctggtcaggagcgcccttcagtcacc
agctataaggaggtgctgaggcagtgcccattagcccttgatgccattctaggcttgttg
tccctttctgtaaaaggggcagaggtggcatccatgacaatgaatgtgatccaaaccgtg
cctaacttggactggctctctgtgtggatcaaagcgtatgcttttgtgcacactggtgac
aactcaagagcaatcagtaccatctgttcactagagaaaaaatccttattgcgagataac
gtggacctattgggaagcttggcagatctgtacttcagagctggagacaataaaaactct
gtcctcaagtttgaacaggcacagatgttggatccttatctgataaaaggaatggatgta
tatggctacctactggcacgagaagggcggctagaggatgttgagaaccttggatgccgc
cttttcaatatctctgatcagcatgcagaaccgtgggtggtttctggctgtcacagcttc
tatagcaaacgctactcccgggccctctatttaggagccaaggccattcagctgaacagt
aatagtgttcaagctctgctacttaagggagcagcacttaggaacatgggcagagtccaa
gaagcaataatccactttcgggaggccatacggctcgcaccttgtcgcttagattgttat
gaaggtcttatcgaatgttacttagcctccaacagtattcgagaagcaatggtaatggct
aacaacgtttacaaaactctgggagcaaatgcacagacccttacccttttagccaccgtt
tgtcttgaagacccagtgacacaggagaaagccaaaacattattagataaagccctgacc
caaaggccagattacattaaggctgtggtgaaaaaagcagaactacttagcagagaacag
aaatatgaagatggaattgctttgctgaggaacgcactggctaatcagagtgactgtgtc
ctgcatcggatcctaggagatttccttgtagctgtcaatgagtatcaggaggcaatggac
cagtatagtatagcactaagtttggaccccaatgaccagaagtctctagaggggatgcag
aagatggagaaggaggagagtcccacggatgccactcaggaggaggatgtggacgacatg
gaagggagtggggaagaaggggacctggagggcagcgacagtgaggcggcccagtgggct
gaccaggagcagtggttcggcatgcaccctgctgagagcccctgtgctctccaggctcct
gcagcccagcacctgctaggacggatcctcattctctgcagctccagccccagggtgaca
gccaggttggaagaggcggctgaaggtgttccctggaaaagtattgagaaacctgcgaga
ggggagctcgaagttcccaacagctgcaggcctgaccccagagggcccttgggagttaac
tctgcagctgtccgtgggtgggaggaaccggcctccaaaggcctcacctgtggcttcctg
cgttcccagccctacactggcttacctgtggcaggccagggcctgcgcggagctgcttcc
cagagcttaggtggcacaaccactgtggagaacagtctggcgattcagaaattcaaacag
tactactaccctaggatccagtgttccacctccgggtgtacacccgaagaagtgaaagct
ggaacgccaaaagattgcacgtccatgtccacgcagcactgtccacagcagcaaaaggtg
gaaacaacccacgtgtccttagatgagtag

>gi568815586r:110353037_110568203|GENSCAN_predicted_peptide_3|171_aa
MCIPLALSIDDMLVEANFILATLADEQSRASSPQSLCLSQKRKRSDLIEKKAGKNVTGQA
LECISKKAAPRRLYPKETLTNISALENCGSPAMKRVDGDVSEVSESSVSNTEEVPGSLCL
RKCDITSSEVHGLSTWTSGNHFPACHSQYHGYLESRFNSCKASLAEGIFTF

>gi568815586r:110353037_110568203|GENSCAN_predicted_CDS_3|516_bp
atgtgcatacctctggctttgagtattgatgatatgttagtggaagctaactttattttg
gccacattagctgatgaacaaagtagagcatcttcaccacagtcactgtgtctttcacag
aaacgaaaaaggtcagatctgattgaaaaaaaggctggcaaaaatgtaactggccaggcc
ctggaatgtatttcaaaaaaagcagcaccaagaaggctttatcctaaggagactctcaca
aacatatctgcattggaaaactgtggcagccctgcaatgaaaagagtggatggagatgtc
agtgaagtatcagaaagcagtgtcagcaacacagaggaagtgccagggtctctgtgtctc
agaaagtgtgacataacatcttcagaggttcatgggcttagtacatggacctctgggaac
cattttcctgcctgccacagccagtatcacggctatctggagagcaggttcaacagctgc
aaggcaagccttgcagagggcatcttcaccttctga

>gi568815586r:110353037_110568203|GENSCAN_predicted_peptide_4|230_aa
XVADGVGGWRDYGVDPSQFSGTLMRTCERLVKEGRFVPSNPIGILTTSYCELLQNKVPLL
GSSTACIVVLDRTSHRLHTANLGDSGFLVVRGGEVVHRSDEQQHYFNTPFQLSIAPPEAE
GVVLSDSPDAADSTSFDVQLGDIILTATDGLFDNMPDYMILQELKKLKNSNYESIQQTAR
SIAEQAHELAYDPNYMSPFAQFACDNGLNVRGGKPDDITVLLSIVAEYTD

>gi568815586r:110353037_110568203|GENSCAN_predicted_CDS_4|693_bp
ngggttgcagatggtgtaggaggctggagagactatggagttgatccatctcaattctca
gggactttaatgcggacgtgtgaacgtttagtaaaagaaggacggttcgtacctagtaat
cccattggaattctcaccacaagctactgtgagttgctgcaaaataaagtccctttgctc
ggtagcagcaccgcctgcattgtggtgctggacagaaccagccaccgcttacacacagca
aacctgggcgattcaggcttcctggttgtcaggggtggtgaagtcgtgcaccgatcagat
gagcagcagcattacttcaacactccattccagctctcaatcgctccccctgaagccgag
ggagtcgtcttgagcgacagtccggatgctgctgatagcacgtctttcgatgtccagcta
ggagacattatcctgacggcaacagatggactctttgacaacatgcctgattatatgatt
cttcaggagctaaaaaagttaaagaattcaaattatgagagtatacaacagactgccaga
agcattgctgagcaagctcatgagctggcctatgacccaaattatatgtcaccttttgca
cagtttgcatgtgacaatggattgaatgtgagaggtggaaagccagatgacatcaccgtc
cttctttcaatagtggctgagtatacagactag