Result of FASTA (ccds) for pF1KE0109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0109, 136 aa
  1>>>pF1KE0109 136 - 136 aa - 136 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3138+/-0.000687; mu= 11.4963+/- 0.041
 mean_var=60.7210+/-12.325, 0's: 0 Z-trim(109.3): 12  B-trim: 0 in 0/50
 Lambda= 0.164590
 statistics sampled from 10761 (10771) to 10761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.331), width:  16
 Scan time:  1.240

The best scores are:                                      opt bits E(32554)
CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17         ( 136)  868 213.8 2.7e-56
CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2           ( 142)  586 146.8   4e-36
CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12         ( 141)  567 142.3   9e-35
CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12         ( 157)  567 142.3 9.9e-35
CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12          ( 198)  567 142.4 1.2e-34


>>CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17              (136 aa)
 initn: 868 init1: 868 opt: 868  Z-score: 1124.3  bits: 213.8 E(32554): 2.7e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
               70        80        90       100       110       120

              130      
pF1KE0 MGLFCLMVAFLILFAM
       ::::::::::::::::
CCDS11 MGLFCLMVAFLILFAM
              130      

>>CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2                (142 aa)
 initn: 603 init1: 533 opt: 586  Z-score: 762.1  bits: 146.8 E(32554): 4e-36
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-136:1-142)

               10        20        30        40              50    
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
       : . . :  .:.:::  .:   ::.::: :. :  :    . . :        :. .:::
CCDS22 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
               70        80        90       100       110       120

          120       130      
pF1KE0 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
CCDS22 FALSEAMGLFCLMVAFLILFAM
              130       140  

>>CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12              (141 aa)
 initn: 548 init1: 523 opt: 567  Z-score: 737.8  bits: 142.3 E(32554): 9e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:7-141)

               10         20        30           40          50    
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
              :.: :.:..  .. : ::.::  :. :   .. : .    . ::   :. : :
CCDS81  MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
                10        20        30        40        50         

           60        70        80        90       100       110    
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
       :::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
      60        70        80        90       100       110         

          120       130      
pF1KE0 FALSEAMGLFCLMVAFLILFAM
       ::::::::::::::::::::::
CCDS81 FALSEAMGLFCLMVAFLILFAM
     120       130       140 

>>CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12              (157 aa)
 initn: 561 init1: 523 opt: 567  Z-score: 737.0  bits: 142.3 E(32554): 9.9e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:23-157)

                              10         20        30           40 
pF1KE0                MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPS
                             :.: :.:..  .. : ::.::  :. :   .. : .  
CCDS31 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
               10        20        30        40        50        60

                50        60        70        80        90         
pF1KE0 YSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
         . ::   :. : ::::..::::::::::::::::::::::::::::::::::::::::
CCDS31 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
               70        80        90       100       110       120

     100       110       120       130      
pF1KE0 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::
CCDS31 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
              130       140       150       

>>CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12               (198 aa)
 initn: 548 init1: 523 opt: 567  Z-score: 735.4  bits: 142.4 E(32554): 1.2e-34
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:64-198)

                                      10         20        30      
pF1KE0                        MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---
                                     :.: :.:..  .. : ::.::  :. :   
CCDS88 RCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL
            40        50        60        70        80        90   

            40          50        60        70        80        90 
pF1KE0 VNSSKQPSYSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
       .. : .    . ::   :. : ::::..::::::::::::::::::::::::::::::::
CCDS88 TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
           100       110       120       130       140       150   

             100       110       120       130      
pF1KE0 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
           160       170       180       190        




136 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:52:35 2016 done: Fri Nov  4 02:52:35 2016
 Total Scan time:  1.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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