Result of FASTA (omim) for pF1KB6880
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6880, 201 aa
  1>>>pF1KB6880 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3777+/-0.000282; mu= 13.7420+/- 0.018
 mean_var=76.4595+/-15.113, 0's: 0 Z-trim(119.4): 14  B-trim: 71 in 1/56
 Lambda= 0.146676
 statistics sampled from 33430 (33444) to 33430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.392), width:  16
 Scan time:  6.000

The best scores are:                                      opt bits E(85289)
NP_001308349 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001308351 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001308350 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001166 (OMIM: 602843) rho GDP-dissociation inhi ( 201) 1348 293.8 1.3e-79
NP_001308352 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001172006 (OMIM: 601925,615244) rho GDP-dissoci ( 204)  938 207.0 1.7e-53
NP_004300 (OMIM: 601925,615244) rho GDP-dissociati ( 204)  938 207.0 1.7e-53
NP_001167 (OMIM: 602844) rho GDP-dissociation inhi ( 225)  763 170.0 2.5e-42
NP_001288169 (OMIM: 601925,615244) rho GDP-dissoci ( 235)  738 164.8   1e-40
NP_001288170 (OMIM: 601925,615244) rho GDP-dissoci ( 235)  738 164.8   1e-40
NP_001288172 (OMIM: 601925,615244) rho GDP-dissoci ( 249)  623 140.4 2.3e-33
XP_011521876 (OMIM: 601925,615244) PREDICTED: rho  ( 249)  623 140.4 2.3e-33
NP_001288171 (OMIM: 601925,615244) rho GDP-dissoci ( 337)  588 133.1 4.9e-31
NP_001172007 (OMIM: 601925,615244) rho GDP-dissoci ( 160)  567 128.5 5.9e-30


>>NP_001308349 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1550.6  bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
              130       140       150       160       170       180

              190       200 
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
       :::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
              190       200 

>>NP_001308351 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1550.6  bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
              130       140       150       160       170       180

              190       200 
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
       :::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
              190       200 

>>NP_001308350 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1550.6  bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
              130       140       150       160       170       180

              190       200 
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
       :::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
              190       200 

>>NP_001166 (OMIM: 602843) rho GDP-dissociation inhibito  (201 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1550.6  bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
              130       140       150       160       170       180

              190       200 
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
       :::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
              190       200 

>>NP_001308352 (OMIM: 602843) rho GDP-dissociation inhib  (201 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1550.6  bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
              130       140       150       160       170       180

              190       200 
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
       :::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
              190       200 

>>NP_001172006 (OMIM: 601925,615244) rho GDP-dissociatio  (204 aa)
 initn: 958 init1: 925 opt: 938  Z-score: 1081.6  bits: 207.0 E(85289): 1.7e-53
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-201:1-204)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_001 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
      120       130       140       150       160       170        

         180       190       200 
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
       : :::::: :::::::::.:::.: .
NP_001 SRFTDDDKTDHLSWEWNLTIKKDWKD
      180       190       200    

>>NP_004300 (OMIM: 601925,615244) rho GDP-dissociation i  (204 aa)
 initn: 958 init1: 925 opt: 938  Z-score: 1081.6  bits: 207.0 E(85289): 1.7e-53
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-201:1-204)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_004 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_004 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
NP_004 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
      120       130       140       150       160       170        

         180       190       200 
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
       : :::::: :::::::::.:::.: .
NP_004 SRFTDDDKTDHLSWEWNLTIKKDWKD
      180       190       200    

>>NP_001167 (OMIM: 602844) rho GDP-dissociation inhibito  (225 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 880.9  bits: 170.0 E(85289): 2.5e-42
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (3-201:31-225)

                                           10        20        30  
pF1KB6                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                     : .: : :.:  :. .    .:. : .:::
NP_001 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
               10        20        30         40           50      

             40        50        60        70        80        90  
pF1KB6 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
NP_001 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
         60        70        80        90       100       110      

            100       110       120       130       140       150  
pF1KB6 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
NP_001 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
        120       130       140       150       160       170      

            160       170       180       190       200 
pF1KB6 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
NP_001 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
        180       190       200       210       220     

>>NP_001288169 (OMIM: 601925,615244) rho GDP-dissociatio  (235 aa)
 initn: 758 init1: 725 opt: 738  Z-score: 852.0  bits: 164.8 E(85289): 1e-40
Smith-Waterman score: 738; 64.2% identity (84.4% similar) in 173 aa overlap (1-168:1-171)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::: ..       
NP_001 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPG
      120       130       140       150       160       170        

         180       190       200                                
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE                               
                                                                
NP_001 FRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
      180       190       200       210       220       230     

>>NP_001288170 (OMIM: 601925,615244) rho GDP-dissociatio  (235 aa)
 initn: 758 init1: 725 opt: 738  Z-score: 852.0  bits: 164.8 E(85289): 1e-40
Smith-Waterman score: 738; 64.2% identity (84.4% similar) in 173 aa overlap (1-168:1-171)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
NP_001 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::: ..       
NP_001 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPG
      120       130       140       150       160       170        

         180       190       200                                
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE                               
                                                                
NP_001 FRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
      180       190       200       210       220       230     




201 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:24:40 2016 done: Sat Nov  5 00:24:41 2016
 Total Scan time:  6.000 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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