Result of FASTA (omim) for
pF1KE0482
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0482, 331 aa
1>>>pF1KE0482 331 - 331 aa - 331 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7449+/-0.000399; mu= 14.6103+/- 0.025
mean_var=82.2070+/-16.791, 0's: 0 Z-trim(113.1): 38 B-trim: 542 in 2/56
Lambda= 0.141455
statistics sampled from 22218 (22256) to 22218 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.261), width: 16
Scan time: 8.250
The best scores are: opt bits E(85289)
XP_006724388 (OMIM: 607253) PREDICTED: apolipoprot ( 331) 2056 429.3 5.4e-120
NP_085147 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 2056 429.3 5.4e-120
NP_663614 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 2056 429.3 5.4e-120
NP_055164 (OMIM: 607253) apolipoprotein L3 isoform ( 331) 2056 429.3 5.4e-120
XP_006724387 (OMIM: 607253) PREDICTED: apolipoprot ( 331) 2056 429.3 5.4e-120
XP_016884437 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 2044 426.9 3e-119
XP_016884436 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 2044 426.9 3e-119
XP_016884440 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 2044 426.9 3e-119
XP_016884438 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 2044 426.9 3e-119
XP_016884439 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 2044 426.9 3e-119
XP_016884435 (OMIM: 607253) PREDICTED: apolipoprot ( 332) 2044 426.9 3e-119
NP_663615 (OMIM: 607253) apolipoprotein L3 isoform ( 402) 2036 425.3 1.1e-118
XP_016884441 (OMIM: 607253) PREDICTED: apolipoprot ( 202) 1231 260.8 1.8e-69
NP_663617 (OMIM: 607253) apolipoprotein L3 isoform ( 202) 1231 260.8 1.8e-69
NP_663616 (OMIM: 607253) apolipoprotein L3 isoform ( 202) 1231 260.8 1.8e-69
NP_085146 (OMIM: 181500,607254) apolipoprotein L4 ( 348) 1216 257.9 2.3e-68
NP_663693 (OMIM: 181500,607254) apolipoprotein L4 ( 351) 1216 257.9 2.3e-68
XP_011528378 (OMIM: 181500,607252) PREDICTED: apol ( 337) 1041 222.2 1.2e-57
NP_112092 (OMIM: 181500,607252) apolipoprotein L2 ( 337) 1041 222.2 1.2e-57
XP_011528379 (OMIM: 181500,607252) PREDICTED: apol ( 337) 1041 222.2 1.2e-57
XP_011528377 (OMIM: 181500,607252) PREDICTED: apol ( 337) 1041 222.2 1.2e-57
NP_663612 (OMIM: 181500,607252) apolipoprotein L2 ( 337) 1041 222.2 1.2e-57
XP_011528376 (OMIM: 181500,607252) PREDICTED: apol ( 337) 1041 222.2 1.2e-57
XP_011528380 (OMIM: 181500,607252) PREDICTED: apol ( 337) 1041 222.2 1.2e-57
XP_016884213 (OMIM: 181500,607252) PREDICTED: apol ( 449) 1041 222.3 1.6e-57
NP_001130013 (OMIM: 603743,612551) apolipoprotein ( 380) 938 201.2 2.9e-51
XP_005261853 (OMIM: 603743,612551) PREDICTED: apol ( 380) 938 201.2 2.9e-51
NP_003652 (OMIM: 603743,612551) apolipoprotein L1 ( 398) 938 201.2 3e-51
NP_001130012 (OMIM: 603743,612551) apolipoprotein ( 398) 938 201.2 3e-51
NP_663318 (OMIM: 603743,612551) apolipoprotein L1 ( 414) 938 201.2 3.1e-51
XP_011528780 (OMIM: 603743,612551) PREDICTED: apol ( 277) 726 157.8 2.4e-38
NP_085144 (OMIM: 607256) apolipoprotein L6 [Homo s ( 343) 530 117.9 3.1e-26
XP_011528694 (OMIM: 607256) PREDICTED: apolipoprot ( 343) 530 117.9 3.1e-26
XP_006724384 (OMIM: 607255) PREDICTED: apolipoprot ( 417) 484 108.6 2.5e-23
NP_085145 (OMIM: 607255) apolipoprotein L5 [Homo s ( 433) 447 101.0 4.7e-21
XP_016884434 (OMIM: 607255) PREDICTED: apolipoprot ( 361) 442 100.0 8.3e-21
NP_110444 (OMIM: 612456) apolipoprotein L domain-c ( 248) 165 43.3 0.00064
NP_001123887 (OMIM: 612456) apolipoprotein L domai ( 279) 165 43.4 0.0007
>>XP_006724388 (OMIM: 607253) PREDICTED: apolipoprotein (331 aa)
initn: 2056 init1: 2056 opt: 2056 Z-score: 2275.2 bits: 429.3 E(85289): 5.4e-120
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
250 260 270 280 290 300
310 320 330
pF1KE0 AEELRRQAQELEENLMELTQIYQRLNPCHTH
:::::::::::::::::::::::::::::::
XP_006 AEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>NP_085147 (OMIM: 607253) apolipoprotein L3 isoform 2 [ (331 aa)
initn: 2056 init1: 2056 opt: 2056 Z-score: 2275.2 bits: 429.3 E(85289): 5.4e-120
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_085 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
250 260 270 280 290 300
310 320 330
pF1KE0 AEELRRQAQELEENLMELTQIYQRLNPCHTH
:::::::::::::::::::::::::::::::
NP_085 AEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>NP_663614 (OMIM: 607253) apolipoprotein L3 isoform 2 [ (331 aa)
initn: 2056 init1: 2056 opt: 2056 Z-score: 2275.2 bits: 429.3 E(85289): 5.4e-120
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
250 260 270 280 290 300
310 320 330
pF1KE0 AEELRRQAQELEENLMELTQIYQRLNPCHTH
:::::::::::::::::::::::::::::::
NP_663 AEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>NP_055164 (OMIM: 607253) apolipoprotein L3 isoform 2 [ (331 aa)
initn: 2056 init1: 2056 opt: 2056 Z-score: 2275.2 bits: 429.3 E(85289): 5.4e-120
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
250 260 270 280 290 300
310 320 330
pF1KE0 AEELRRQAQELEENLMELTQIYQRLNPCHTH
:::::::::::::::::::::::::::::::
NP_055 AEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>XP_006724387 (OMIM: 607253) PREDICTED: apolipoprotein (331 aa)
initn: 2056 init1: 2056 opt: 2056 Z-score: 2275.2 bits: 429.3 E(85289): 5.4e-120
Smith-Waterman score: 2056; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)
10 20 30 40 50 60
pF1KE0 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
250 260 270 280 290 300
310 320 330
pF1KE0 AEELRRQAQELEENLMELTQIYQRLNPCHTH
:::::::::::::::::::::::::::::::
XP_006 AEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>XP_016884437 (OMIM: 607253) PREDICTED: apolipoprotein (332 aa)
initn: 2036 init1: 2036 opt: 2044 Z-score: 2262.0 bits: 426.9 E(85289): 3e-119
Smith-Waterman score: 2044; 99.7% identity (99.7% similar) in 332 aa overlap (1-331:1-332)
10 20 30 40 50
pF1KE0 MDS-EKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSVEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
250 260 270 280 290 300
300 310 320 330
pF1KE0 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
::::::::::::::::::::::::::::::::
XP_016 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>XP_016884436 (OMIM: 607253) PREDICTED: apolipoprotein (332 aa)
initn: 2036 init1: 2036 opt: 2044 Z-score: 2262.0 bits: 426.9 E(85289): 3e-119
Smith-Waterman score: 2044; 99.7% identity (99.7% similar) in 332 aa overlap (1-331:1-332)
10 20 30 40 50
pF1KE0 MDS-EKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSVEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
250 260 270 280 290 300
300 310 320 330
pF1KE0 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
::::::::::::::::::::::::::::::::
XP_016 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>XP_016884440 (OMIM: 607253) PREDICTED: apolipoprotein (332 aa)
initn: 2036 init1: 2036 opt: 2044 Z-score: 2262.0 bits: 426.9 E(85289): 3e-119
Smith-Waterman score: 2044; 99.7% identity (99.7% similar) in 332 aa overlap (1-331:1-332)
10 20 30 40 50
pF1KE0 MDS-EKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSVEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
250 260 270 280 290 300
300 310 320 330
pF1KE0 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
::::::::::::::::::::::::::::::::
XP_016 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>XP_016884438 (OMIM: 607253) PREDICTED: apolipoprotein (332 aa)
initn: 2036 init1: 2036 opt: 2044 Z-score: 2262.0 bits: 426.9 E(85289): 3e-119
Smith-Waterman score: 2044; 99.7% identity (99.7% similar) in 332 aa overlap (1-331:1-332)
10 20 30 40 50
pF1KE0 MDS-EKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSVEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
250 260 270 280 290 300
300 310 320 330
pF1KE0 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
::::::::::::::::::::::::::::::::
XP_016 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
>>XP_016884439 (OMIM: 607253) PREDICTED: apolipoprotein (332 aa)
initn: 2036 init1: 2036 opt: 2044 Z-score: 2262.0 bits: 426.9 E(85289): 3e-119
Smith-Waterman score: 2044; 99.7% identity (99.7% similar) in 332 aa overlap (1-331:1-332)
10 20 30 40 50
pF1KE0 MDS-EKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDSVEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE0 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE0 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TWRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSA
250 260 270 280 290 300
300 310 320 330
pF1KE0 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
::::::::::::::::::::::::::::::::
XP_016 SAEELRRQAQELEENLMELTQIYQRLNPCHTH
310 320 330
331 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 05:10:30 2016 done: Thu Nov 3 05:10:31 2016
Total Scan time: 8.250 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]