Result of GENSCAN for pF1KE0482
GENSCAN 1.0	Date run:  3-Nov-116	Time: 05:10:55

Sequence gi568815576r:36041203_36245601 : 204399 bp : 46.73% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  19395  19446   52  2  1   44   86    51 0.429   1.82
 1.02 Term +  42051  42343  293  1  2  114   45   148 0.833   8.61
 1.03 PlyA +  42734  42739    6                               1.05

 2.00 Prom +  49627  49666   40                              -2.46
 2.01 Init +  56200  56210   11  0  2   68   94    15 0.821  -0.80
 2.02 Intr +  56338  56364   27  1  0  123  103    39 0.794   6.13
 2.03 Intr +  63508  63557   50  1  2   87   71    60 0.644   2.52
 2.04 Intr +  82912  83094  183  2  0   53   53   156 0.435   8.36
 2.05 Intr +  92785  92839   55  2  1  118   27    44 0.089  -0.66
 2.06 Term +  94832  94991  160  2  1  107   43    92 0.219   4.01
 2.07 PlyA +  94996  95001    6                               1.05

 3.04 PlyA -  96283  96278    6                               1.05
 3.03 Term - 100856  99998  859  1  1   87   46   569 0.999  44.83
 3.02 Intr - 104397 104271  127  1  1   46   91   134 0.709   9.24
 3.01 Init - 107853 107844   10  0  1  114   96    -2 0.763   3.65
 3.00 Prom - 112640 112601   40                              -3.76

 4.06 PlyA - 113333 113328    6                               1.05
 4.05 Term - 118478 118360  119  0  2  119   48    85 0.961   6.30
 4.04 Intr - 119587 119467  121  1  1   96  111    25 0.879   5.67
 4.03 Intr - 125555 125479   77  0  2   62   33    56 0.139  -3.27
 4.02 Intr - 129287 129135  153  0  0   74   -4   110 0.249   0.44
 4.01 Init - 139300 138922  379  1  1   74   55   250 0.664  17.37
 4.00 Prom - 139657 139618   40                              -7.66

 5.00 Prom + 143007 143046   40                              -4.96
 5.01 Init + 145231 145321   91  0  1   72  103    65 0.650   6.38
 5.02 Term + 146863 147086  224  2  2   56   54   126 0.912   3.08
 5.03 PlyA + 148861 148866    6                               1.05

 6.05 PlyA - 148976 148971    6                               1.05
 6.04 Term - 150710 149873  838  1  1   87   47   507 0.999  38.94
 6.03 Intr - 154235 154109  127  0  1   78   91   143 0.997  13.34
 6.02 Intr - 158174 158128   47  1  2   81  121     0 0.157   0.65
 6.01 Init - 160834 160791   44  1  2  100   93    37 0.495   5.52
 6.00 Prom - 162518 162479   40                              -4.06

 7.00 Prom + 173371 173410   40                              -6.16
 7.01 Init + 181996 182155  160  0  1   71   72    94 0.614   4.90
 7.02 Intr + 183637 183728   92  2  2   88   47    35 0.788  -0.89
 7.03 Intr + 184809 185009  201  2  0   60   97   163 0.858  13.88
 7.04 Term + 185263 185613  351  0  0   62   37    68 0.427  -6.41
 7.05 PlyA + 185813 185818    6                               1.05

 8.07 PlyA - 186152 186147    6                              -5.32
 8.06 Term - 187078 186202  877  0  1   94   46   574 0.999  45.85
 8.05 Intr - 190264 190138  127  2  1   90  115   112 0.999  13.84
 8.04 Intr - 192039 191951   89  2  2   70   96    58 0.820   4.41
 8.03 Intr - 192253 192200   54  0  0  121  105     1 0.700   3.19
 8.02 Intr - 198033 197934  100  1  1   23  100    37 0.301  -2.43
 8.01 Intr - 198359 198239  121  2  1   79  111    25 0.406   3.97

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 175497 175431   67  0  1   73   99    73 0.819   6.14


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_1|114_aa
MRMQRHKNDTMDFEDSEAISPAIRMPIPCCDDPGPDLRCPDHKISGEGGLLELGGPGHSS
ISRGHSVAGTIICVTFFLSETRKSYLVVVETLKIVEKPNEQLEIIHEHCQDSSS

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_1|345_bp
atgaggatgcaaaggcataagaatgatacaatggactttgaagactcggaggccatctct
ccagccatacgcatgcccatcccctgctgcgatgaccctgggccagacctgcgatgccct
gatcacaagatatcaggggaaggtggcttgttggagttgggtggtccagggcactcaagt
atctcaagaggccactctgtagcaggcaccattatttgtgtaacattttttctctcggag
acacgcaagtcatacctggttgttgtagaaactttgaaaattgtagaaaaacctaatgaa
caattggaaatcatccatgagcactgccaagacagcagtagctag

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_2|161_aa
MLIRYLAIPVYRMGLLIGEPKLSQTVIYASPGLRLRSADSTMRVPTAPPPGSAEAVGNTQ
GSQCARFSTAALKIQHEAWLGELEWLTLWSDSQCSSQYGLESELQNGKESGLLWNASQGR
FLKSNGAHLTVQAAWKELHPRTRICIVSWVTTKELAGISTF

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_2|486_bp
atgttgatcaggtatttggctattccagtataccgcatgggtttgcttattggagaaccc
aagctaagccaaacggtcatctatgcaagtcccgggctgcggctgcgcagcgccgacagc
acgatgcgtgtgccgacagcgccacctcctggctctgccgaggctgttggcaacacgcag
ggctcgcagtgcgcccgcttttctactgcagccctcaaaattcagcacgaggcttggcta
ggggagcttgagtggctgacactgtggtctgacagccagtgttcaagtcagtatggcctt
gagagtgaactgcagaatggaaaggagtctggcctgctgtggaacgcctctcaaggacgg
ttcctgaagagcaatggagcacacctcacagtccaggctgcctggaaggagctgcatcct
cggaccaggatctgcattgtttcctgggtaacaactaaggaattagctggaatttcaaca
ttttag

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_3|331_aa
MDSEKKRFTEEATKYFRERVSPVHLQILLTNNEAWKRFVTAAELPRDEADALYEALKKLR
TYAAIEDEYVQQKDEQFREWFLKEFPQVKRKIQESIEKLRALANGIEEVHRGCTISNVVS
SSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITTSIVEHSYTSSAEAE
ASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTT
WRISAGSGGQAERTIAGTTRAVSRGARILSATTSGIFLALDVVNLVYESKHLHEGAKSAS
AEELRRQAQELEENLMELTQIYQRLNPCHTH

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_3|996_bp
atggactcagaaaagaaacgctttactgaagaggccaccaaatacttccgggagagagtc
agcccagtgcatctgcaaatcctgctgactaacaatgaagcctggaagagattcgtgact
gcggctgaattgcccagggatgaggcagatgctctctacgaagctctgaagaagcttaga
acatatgcagctattgaggacgaatatgtgcagcagaaagatgagcagtttagggaatgg
tttttgaaagagtttccccaagtcaagaggaagatccaggagtccatagaaaagcttcgt
gcccttgcaaatggtattgaagaggtccacagaggctgcaccatctccaatgtggtgtcc
agctccactggcgctgcctctggcatcatgtcccttgctggtcttgttttggcaccattt
acagcagggacgagtctggcccttactgcagctggggtagggctgggagcagcgtctgct
gtgactgggatcaccaccagcatcgtggagcactcatacacatcatcagcagaagctgaa
gccagcaggctgactgcaaccagcattgaccgattgaaggtatttaaggaagttatgcgt
gacatcacacccaacttactttcccttcttaataattattacgaagccacacaaaccatt
gggagtgaaatccgtgccatcaggcaagccagagccagggcccgactccctgtgaccacc
tggcgaatctcagctggaagtggtggtcaagcagagagaacgattgcaggcaccacccgg
gcagtgagcagaggagcccggatcctgagtgcgaccacttcaggcatcttccttgcactg
gatgtggtcaaccttgtatacgagtcaaagcacttgcatgagggggcaaagtctgcatct
gctgaggagctgaggcggcaggctcaggagctggaggagaatctaatggagctcactcag
atctatcagcgtctgaatccatgccatacccactga

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_4|282_aa
MWLPYKSDHQGAAMRWAKAKTVGFPAHCADNLAAVQNPGTCSWLRLERFPPHRVTYIEPY
NLCGTGESILLAPPPQSGGKRYDLTCVDTTMRLLQAFSVKRATQLETMKRLTALSVTNGM
AKRTDRDIRSPEVLKRHIHLTWYERATEGYTGVECLVGMSCQTAIIQASPENGPMFLGVW
GGGHEAAGTFAQDETVPSERVMLGISQSLENVSGYYADARLEVGSTQLRTAGSCSHSFKR
SFLGLWVIEKKEAVLFPSGKDGPDRGSENGMLQNGVCHMIPA

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_4|849_bp
atgtggctaccttataagagcgaccaccagggggcagccatgaggtgggccaaagcaaag
actgtaggcttccctgcccactgtgcagataatctagcagctgttcagaaccccgggacc
tgttcatggctgcgactagaaaggttccctccacaccgggtcacatacatcgagccatac
aacctgtgcgggactggcgagtcgattttattggcccccccgccccagagcggagggaaa
cggtatgacttaacctgtgtggatacaacaatgaggctactacaggccttcagtgtaaaa
cgtgccacccaactggagaccatgaagcgtctcaccgctcttagtgtcacgaatggcatg
gctaaaaggacagatagagatattaggtcccctgaagtcttgaagagacatattcatctt
acttggtacgagagggccactgaaggctatactggagtggagtgcctagtgggcatgtcc
tgtcagacagcaataattcaagcatcccctgagaatggccctatgttccttggtgtatgg
ggtggtggccacgaggctgcagggacatttgcccaggatgaaacagttcccagtgaaagg
gtcatgttgggtatatctcagagcctggagaacgtgtctggttattatgcagatgcacgg
ctggaggtgggatccacacagctcagaacagctggatcttgctcacactctttcaagaga
agcttccttggcctctgggtgatagagaagaaagaagctgtgctgttccctagtgggaaa
gatggcccagacaggggcagtgagaacggcatgttgcagaatggtgtctgccacatgatc
ccagcttga

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_5|104_aa
MQKRAMVCVALFGEEASAFVFVVRMAGFITGELRPQQPTLDSMKALGFCAKSNRKPLKTW
KPVFDEICVFMGQLGPMWRKSWPSGKGCVSAKTILEAFAGVWAK

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_5|315_bp
atgcagaagagggcgatggtgtgtgtggctctctttggagaagaagcaagtgcatttgtc
tttgtcgttcggatggctggattcataacaggggaactcaggccacagcagcctacatta
gacagcatgaaggctctgggcttttgtgctaagagtaataggaagccattgaagacatgg
aagccggtgtttgatgaaatctgtgtttttatgggtcaacttggcccaatgtggaggaag
agctggcctagcggcaagggctgtgtatcagcgaagaccattttggaagcttttgcagga
gtctgggcgaagtga

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_6|351_aa
MEGAALLKIFVVCIWVQQNHPGWTVAGQFQEKKRFTEEVIEYFQKKVSPVHLKILLTSDE
AWKRFVRVAELPREEADALYEALKNLTPYVAIEDKDMQQKEQQFREWFLKEFPQIRWKIQ
ESIERLRVIANEIEKVHRGCVIANVVSGSTGILSVIGVMLAPFTAGLSLSITAAGVGLGI
ASATAGIASSIVENTYTRSAELTASRLTATSTDQLEALRDILRDITPNVLSFALDFDEAT
KMIANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVARNLGKATSGVL
VVLDVVNLVQDSLDLHKGAKSESAESLRQWAQELEENLNELTHIHQSLKAG

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_6|1056_bp
atggagggagctgctttgctgaaaatctttgtcgtctgcatctgggtgcagcaaaaccat
ccaggctggacagtggctggacagttccaagaaaagaaacgcttcactgaagaagtcatt
gaatacttccagaagaaagttagcccagtgcatctgaaaatcctgctgactagcgatgaa
gcctggaagagatttgtgcgtgtggctgaattgcccagggaagaggcagatgctctctat
gaagctctgaagaatcttacaccatatgtggctattgaggacaaagacatgcagcaaaaa
gaacagcagtttagggagtggtttttgaaagagtttcctcaaatcagatggaagattcag
gagtccatagaaaggcttcgtgtcattgcaaatgagattgaaaaggtccacagaggctgc
gtcatcgccaatgtggtgtctggctccactggcatcctgtctgtcattggcgttatgttg
gcaccatttacagcagggctgagcctgagcattactgcagctggggtagggctgggaata
gcatctgccacggctgggatcgcctccagcatcgtggagaacacatacacaaggtcagca
gaactcacagccagcaggctgactgcaaccagcactgaccaattggaggcattaagggac
attctgcgtgacatcacacccaatgtgctttcttttgcacttgattttgacgaagccaca
aaaatgattgcgaatgatgtccatacactcaggagatctaaagccactgttggacgccct
ttgattgcttggcgatatgtacctataaatgttgttgagacactgagaacacgtggggcc
cccacccggatagtgagaaaagtagcccggaacctgggcaaggccacttcaggtgtcctt
gttgtgctggatgtagtcaaccttgtgcaagactcactggacttgcacaagggggcaaaa
tccgagtctgctgagtcgctgaggcagtgggctcaggagctggaggagaatctcaatgag
ctcacccatatccatcagagtctaaaagcaggctag

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_7|267_aa
MVCSSSRLGCQLCPGLDEPPSSKCWPLRCDAKNSEMTWYDKEEGGLNVHRRLEGPQATTG
YFRQHHGLHLCAKSNGKPLEGWKQHFKFPWNFIGPSVSPGLEEHRPLAKAPTTLLPSQPP
SPPLREKLETDGPQSLEGAERPKNDSNKSSLGSSRGHAPFSNLEGTRHMTTTPTTIMKKP
LADCDTPPEGQGRVDAGKTERETITRERLYSWKDIKPGGGSVVELLFLLLYPTVLTLVFS
IFSSFFSWPSHCWFLQAPPLFFAQYIL

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_7|804_bp
atggtttgctccagcagcaggctgggatgccagctgtgcccagggctggatgagccaccc
tcaagtaaatgctggccacttcgttgtgacgccaaaaattcagaaatgacttggtatgac
aaagaagaaggaggactcaacgtgcataggagattggaaggaccccaggccacaacaggc
tactttaggcagcatcatggcctacatctttgtgctaagagtaatgggaagccattagag
ggttggaagcagcacttcaagttcccctggaacttcatcggtccatcggtgtcccctggt
ctggaagagcaccgaccacttgccaaggcccccaccactctgctgccatcacaaccacca
tcaccaccattacgagaaaaacttgagactgatggcccccaaagcttagaaggagctgag
agaccaaagaatgactcgaacaagtccagcttgggttcaagcaggggacatgcacccttt
agtaacctggaggggacccgtcacatgacaaccaccccaaccaccatcatgaagaagcca
ctggctgactgtgatacacccccagaaggacaagggagagtggatgctggaaagacagag
cgagagaccatcaccagggaaagactttattcttggaaggacatcaaacctggggggggg
tcggtagtggagctgctgtttcttctcctgtatccaacagttctaactctggttttctcc
attttcagctctttcttttcctggccttctcattgctggttcctgcaagctccccctcta
ttcttcgcccaatatattctttag

>gi568815576r:36041203_36245601|GENSCAN_predicted_peptide_8|455_aa
GISGRPEDVSGYYTDAQLDVGSTQLRTVGSCSVSVRGRSLERGGENSLDGFTKLPGLSSG
SDTLRHGQLTPEERTRGPCLGVRVREEEAGTRVKENLPVWTVTGELQGKPLGNPAAGTMN
PESSIFIEDYLKYFQDQVSRENLLQLLTDDEAWNGFVAAAELPRDEADELRKALNKLASH
MVMKDKNRHDKDQQHRQWFLKEFPRLKRELEDHIRKLRALAEEVEQVHRGTTIANVVSNS
VGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITCSVVELVNKLRARAQAR
NLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYAPP
PHVIGRISAEGGEQVERVVEGPAQAMSRGTMIVGAATGGILLLLDVVSLAYESKHLLEGA
KSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ

>gi568815576r:36041203_36245601|GENSCAN_predicted_CDS_8|1368_bp
ggtatatctgggaggccggaggacgtgtctggttattacacagatgcacagctggacgtg
ggatccacacagctcagaacagttggatcttgctcagtctctgtcagaggaagatccctt
gagagaggtggggaaaacagcttagatgggttcacaaagctccccgggctcagctctggt
tctgacaccctcagacacggccagctgaccccagaagaaaggacaagaggaccctgcctt
ggtgtgagagtgagggaagaggaagctggaacgagggttaaggaaaaccttccagtctgg
acagtgactggagagctccaaggaaagcccctcggtaacccagccgctggcaccatgaac
ccagagagcagtatctttattgaggattaccttaagtatttccaggaccaagtgagcaga
gagaatctgctacaactgctgactgatgatgaagcctggaatggattcgtggctgctgct
gaactgcccagggatgaggcagatgagctccgtaaagctctgaacaagcttgcaagtcac
atggtcatgaaggacaaaaaccgccacgataaagaccagcagcacaggcagtggtttttg
aaagagtttcctcggttgaaaagggagcttgaggatcacataaggaagctccgtgccctt
gcagaggaggttgagcaggtccacagaggcaccaccattgccaatgtggtgtccaactct
gttggcactacctctggcatcctgaccctcctcggcctgggtctggcacccttcacagaa
ggaatcagttttgtgctcttggacactggcatgggtctgggagcagcagctgctgtggct
gggattacctgcagtgtggtagaactagtaaacaaattgcgggcacgagcccaagcccgc
aacttggaccaaagcggcaccaatgtagcaaaggtgatgaaggagtttgtgggtgggaac
acacccaatgttcttaccttagttgacaattggtaccaagtcacacaagggattgggagg
aacatccgtgccatcagacgagccagagccaaccctcagttaggagcgtatgccccaccc
ccgcatgtcattgggcgaatctcagctgaaggcggtgaacaggttgagagggttgttgaa
ggccccgcccaggcaatgagcagaggaaccatgatcgtgggtgcagccactggaggcatc
ttgcttctgctggatgtggtcagccttgcatatgagtcaaagcacttgcttgagggggca
aagtcagagtcagctgaggagctgaagaagcgggctcaggagctggaggggaagctcaac
tttctcaccaagatccatgagatgctgcagccaggccaagaccaatga
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com