Result of FASTA (ccds) for
pF1KB3445
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3445, 202 aa
1>>>pF1KB3445 202 - 202 aa - 202 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9079+/-0.000705; mu= 15.3748+/- 0.042
mean_var=60.2025+/-11.929, 0's: 0 Z-trim(109.5): 17 B-trim: 0 in 0/52
Lambda= 0.165298
statistics sampled from 10930 (10946) to 10930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.336), width: 16
Scan time: 1.980
The best scores are: opt bits E(32554)
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 977 241.0 7.1e-64
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 861 213.3 1.5e-55
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 810 201.0 3.9e-52
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 518 131.5 6e-31
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 518 131.5 6.3e-31
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 435 111.8 5.8e-25
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 384 99.4 1.5e-21
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 378 98.0 4.2e-21
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 342 89.4 1.5e-18
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 338 88.4 2.9e-18
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 338 88.4 3.1e-18
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 285 75.8 2.2e-14
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 280 74.7 5.2e-14
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 262 70.3 8.5e-13
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 247 66.7 8.6e-12
>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa)
initn: 977 init1: 977 opt: 977 Z-score: 1260.2 bits: 241.0 E(32554): 7.1e-64
Smith-Waterman score: 1080; 77.3% identity (84.8% similar) in 198 aa overlap (5-202:201-386)
10 20 30
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTW
.::::: :: :: .:.: ::. .:
CCDS46 NFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESW
180 190 200 210 220 230
40 50 60 70 80 90
pF1KB3 LCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSP
::. ... . .: .. ::::. .::::::::::::::::::::::::
CCDS46 LCFTMEVTKHHSAVFRKRGVFRN------------QVDPETHCHAERCFLSWFCDDILSP
240 250 260 270
100 110 120 130 140 150
pF1KB3 NTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEG
280 290 300 310 320 330
160 170 180 190 200
pF1KB3 ASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ
340 350 360 370 380
>--
initn: 949 init1: 949 opt: 949 Z-score: 1224.1 bits: 234.3 E(32554): 7.3e-62
Smith-Waterman score: 949; 66.0% identity (81.5% similar) in 200 aa overlap (1-200:1-200)
10 20 30 40 50 60
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFL
::::::::::: . . ::: ::::::: . : : ...::..::.:: :. .:..::
CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPF
:.: ::.::: .::: :. : :.. : : . :: :::: :.::. ::.::: .. .::
CCDS46 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF
130 140 150 160 170 180
190 200
pF1KB3 KPWKGLQTNFRLLKRRLREILQ
:: .. :. :.: :.::
CCDS46 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH
190 200 210 220 230 240
>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa)
initn: 1518 init1: 847 opt: 861 Z-score: 1110.9 bits: 213.3 E(32554): 1.5e-55
Smith-Waterman score: 985; 70.2% identity (81.3% similar) in 198 aa overlap (5-202:188-373)
10 20 30
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTW
.::::: :: :: .:.: :::. .:
CCDS33 NFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESW
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB3 LCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSP
::. ... . .: . : ::::. .::::::::::::::::::::::::
CCDS33 LCFTMEVVKHHSPVSWKRGVFRN------------QVDPETHCHAERCFLSWFCDDILSP
220 230 240 250 260
100 110 120 130 140 150
pF1KB3 NTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEG
::::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::::
CCDS33 NTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEG
270 280 290 300 310 320
160 170 180 190 200
pF1KB3 ASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ
:::.::::::: ::.::::.:::::::::::. :: .: .:.:::.
CCDS33 ASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE
330 340 350 360 370
>--
initn: 701 init1: 524 opt: 708 Z-score: 913.7 bits: 176.8 E(32554): 1.4e-44
Smith-Waterman score: 708; 51.5% identity (72.5% similar) in 200 aa overlap (1-200:1-187)
10 20 30 40 50 60
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::: :
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 PKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFL
. :: : ::: ::::::: . : ...::..::.:::.:....::::
CCDS33 SQ----------PE-H-HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL
60 70 80 90 100
130 140 150 160 170 180
pF1KB3 ARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPF
:.: ::.::: .::: :.:. ::...:: ::: :: :::: ..:. ::.:::::. .::
CCDS33 AEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPF
110 120 130 140 150 160
190 200
pF1KB3 KPWKGLQTNFRLLKRRLREILQ
:: .. :. .:.: :.::
CCDS33 MPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKH
170 180 190 200 210 220
>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa)
initn: 799 init1: 799 opt: 810 Z-score: 1049.4 bits: 201.0 E(32554): 3.9e-52
Smith-Waterman score: 952; 70.4% identity (80.3% similar) in 203 aa overlap (1-202:1-190)
10 20 30 40 50
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGPV
:::::::::. :: ::: .:.: :. ::::. :. ::: :: . : :::::.
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRN--
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 LPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEF
.:: :::::::::::::::::::::::.:.:::::::::::.::::::::
CCDS13 ----------QVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEF
60 70 80 90 100
120 130 140 150 160 170
pF1KB3 LARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEP
:::::::::::::::: :: ::::: ::::::..:.:: :.:: ::.::::.:.::
CCDS13 LARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEP
110 120 130 140 150 160
180 190 200
pF1KB3 FKPWKGLQTNFRLLKRRLREILQ
:::::::.:::::::::::: ::
CCDS13 FKPWKGLKTNFRLLKRRLRESLQ
170 180 190
>>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 (357 aa)
initn: 921 init1: 515 opt: 518 Z-score: 669.1 bits: 131.5 E(32554): 6e-31
Smith-Waterman score: 899; 61.4% identity (78.7% similar) in 202 aa overlap (1-202:1-190)
10 20 30 40 50 60
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFL
: : ::: ::::::: . : ...::..::.:::.:....::::
CCDS58 FKPQY------------HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL
70 80 90 100
130 140 150 160 170 180
pF1KB3 ARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPF
..: ::.::: .::: :.:. ::...:: ::: :: : :: :..:. ::.::::.. . :
CCDS58 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQF
110 120 130 140 150 160
190 200
pF1KB3 KPWKGLQTNFRLLKRRLREILQ
:: .. :. .:.: :.:::.
CCDS58 MPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTW
170 180 190 200 210 220
>--
initn: 402 init1: 178 opt: 361 Z-score: 466.8 bits: 94.1 E(32554): 1.1e-19
Smith-Waterman score: 390; 39.9% identity (61.1% similar) in 193 aa overlap (12-202:193-353)
10 20 30 40
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKI
: ::: ::.:.:.. : :.:::::.
CCDS58 NEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVE-
170 180 190 200 210 220
50 60 70 80 90 100
pF1KB3 KRGRSNLLWDTGVFRGPVLPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVT
: :.:.. :: ...: ....:.. :.: :.::
CCDS58 -R------LDNGTW---VL---MDQH----------------MGFLCNE-LDPAQIYRVT
230 240 250
110 120 130 140 150
pF1KB3 WYTSWSPCPE--CAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKI
:. ::::: ::::: :: ....: : ::.::. : .: :.:.: : . ::.:.:
CCDS58 WFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARI-YDYDPLYKEALQMLRDAGAQVSI
260 270 280 290 300 310
160 170 180 190 200
pF1KB3 MGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ
: : .: :: .::: . ::.:: ::. . . :. ::: :::
CCDS58 MTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
320 330 340 350
>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa)
initn: 921 init1: 515 opt: 518 Z-score: 668.7 bits: 131.5 E(32554): 6.3e-31
Smith-Waterman score: 899; 61.4% identity (78.7% similar) in 202 aa overlap (1-202:1-190)
10 20 30 40 50 60
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFL
: : ::: ::::::: . : ...::..::.:::.:....::::
CCDS13 FKPQY------------HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL
70 80 90 100
130 140 150 160 170 180
pF1KB3 ARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPF
..: ::.::: .::: :.:. ::...:: ::: :: : :: :..:. ::.::::.. . :
CCDS13 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQF
110 120 130 140 150 160
190 200
pF1KB3 KPWKGLQTNFRLLKRRLREILQ
:: .. :. .:.: :.:::.
CCDS13 MPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTW
170 180 190 200 210 220
>--
initn: 425 init1: 178 opt: 413 Z-score: 533.4 bits: 106.5 E(32554): 2.2e-23
Smith-Waterman score: 413; 40.9% identity (60.6% similar) in 198 aa overlap (12-202:193-378)
10 20 30 40
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKI
: ::: ::.:.:.. : :.:::::.
CCDS13 NEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVE-
170 180 190 200 210 220
50 60 70 80 90
pF1KB3 KRGRSNLLWDTGVFRGPVLPKRQSNHRQEVDPETHC-----HAERCFLSWFCDDILSPNT
: :.:.. :: .. . . . : ::: ::. . :.:
CCDS13 -R------LDNGTW---VLMDQHMGFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQ
230 240 250 260 270
100 110 120 130 140 150
pF1KB3 NYEVTWYTSWSPCPE--CAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEG
:.:::. ::::: ::::: :: ....: : ::.::. : .: :.:.: : . :
CCDS13 IYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARI-YDYDPLYKEALQMLRDAG
280 290 300 310 320 330
160 170 180 190 200
pF1KB3 ASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ
:.:.:: : .: :: .::: . ::.:: ::. . . :. ::: :::
CCDS13 AQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
340 350 360 370 380
>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa)
initn: 557 init1: 254 opt: 435 Z-score: 561.7 bits: 111.8 E(32554): 5.8e-25
Smith-Waterman score: 587; 48.8% identity (66.7% similar) in 207 aa overlap (1-202:1-194)
10 20 30 40 50 60
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .:::
CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRG---
10 20 30 40 50
70 80 90 100 110
pF1KB3 PKRQSNHRQEVDPETHCHAERCFLSWFCD-DILSPNTNYEVTWYTSWSPCPECAGEVAEF
.: : . : : :. :: : . .:::::: ::::: .:. ..: :
CCDS13 ---------QVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATF
60 70 80 90 100
120 130 140 150 160 170
pF1KB3 LARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQ--EG--ASVKIMGYKDFVSCWKNFVYS
::. .:.::::.::: :::: ::::.: :: : .: :..:::.: .: ::..::::
CCDS13 LAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYS
110 120 130 140 150 160
180 190 200
pF1KB3 DDEPFKPWKGLQTNFRLLKRRLREILQ
. : :.::..: . ::. : :::.
CCDS13 QRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERM
170 180 190 200 210 220
>--
initn: 468 init1: 192 opt: 415 Z-score: 535.9 bits: 107.0 E(32554): 1.6e-23
Smith-Waterman score: 415; 41.2% identity (65.8% similar) in 187 aa overlap (16-202:201-380)
10 20 30 40
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGR
:: ::.::: . :: :.:::::. ..
CCDS13 LFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHND
180 190 200 210 220 230
50 60 70 80 90 100
pF1KB3 SNLLWDTGVFRGPVLPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTS
. .: . :: . :. :.. : :: :::. . :. . .:.:: .::
CCDS13 TWVLLNQ--RRGFLC--NQAPHKHGFLEGRH--AELCFLDVIPFWKLDLDQDYRVTCFTS
240 250 260 270 280
110 120 130 140 150 160
pF1KB3 WSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDF
:::: :: :.:.:......:.: :::::. : . :::: .:.. ::...:: :..:
CCDS13 WSPCFSCAQEMAKFISKNKHVSLCIFTARI-YDDQGRCQEGLRTLAEAGAKISIMTYSEF
290 300 310 320 330 340
170 180 190 200
pF1KB3 VSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ
:: .:: . ::.:: ::. . . :. ::: :::
CCDS13 KHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN
350 360 370 380
>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa)
initn: 434 init1: 221 opt: 384 Z-score: 500.1 bits: 99.4 E(32554): 1.5e-21
Smith-Waterman score: 424; 38.7% identity (61.3% similar) in 191 aa overlap (12-201:6-180)
10 20 30 40 50 60
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
: : : .:.: :: :.::: :: . . ... : : .:.
CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRN---
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 PKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFL
.. ::.: :: .. : :.:. :.:::.:::::: .:: .::.::
CCDS41 -------------KNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFL
60 70 80 90
130 140 150 160 170
pF1KB3 ARHSNVNLTIFTARLCYFWDTDYQ-EGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEP
. :..: :::::: . : . ::: : . :... :: .::. ::..:: . ..
CCDS41 RGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERT
100 110 120 130 140 150
180 190 200
pF1KB3 FKPWKGLQTNFRLLKRRLREILQ
:: :.::. : :.:.::.::
CCDS41 FKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
160 170 180 190
>>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 (199 aa)
initn: 373 init1: 166 opt: 378 Z-score: 492.4 bits: 98.0 E(32554): 4.2e-21
Smith-Waterman score: 378; 38.6% identity (59.4% similar) in 197 aa overlap (8-202:9-195)
10 20 30 40 50
pF1KB3 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPV
: . : : .::.: :: :.:::::. . ... : :: .
CCDS13 MEASPASGPRHLMDPHIFTSNFNNG---IGRHKTYLCYEVERLDNGTSVKMDQ--HRGFL
10 20 30 40 50
60 70 80 90 100 110
pF1KB3 LPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVA
... .. . ::: ::. . :.: :.:::. ::::: :::::
CCDS13 ----HNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB3 EFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDD
:: ....: : ::.::. : .: :.:.: : . ::.:.:: : .: :: .:: .
CCDS13 AFLQENTHVRLRIFAARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFKHCWDTFVDHQG
120 130 140 150 160 170
180 190 200
pF1KB3 EPFKPWKGLQTNFRLLKRRLREILQ
::.:: ::. . . :. ::: :::
CCDS13 CPFQPWDGLDEHSQALSGRLRAILQNQGN
180 190
>>CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 (183 aa)
initn: 337 init1: 296 opt: 342 Z-score: 446.5 bits: 89.4 E(32554): 1.5e-18
Smith-Waterman score: 342; 39.3% identity (66.4% similar) in 140 aa overlap (68-202:44-182)
40 50 60 70 80 90
pF1KB3 EVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTN
: . . .:::: ::.. . . :. .
CCDS13 NNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQC
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB3 YEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASV
:.:: : .:::: :: :...:. :...:: ::..:: : : :.:: : . :
CCDS13 YQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPV
80 90 100 110 120 130
160 170 180 190 200
pF1KB3 KIMGYKDFVSCWKNFVYSDDEP--FKPWKGLQT---NFRLLKRRLREILQ
..::. .:..::.::: . ..: :.:.: :. : : .::::..: :
CCDS13 EVMGFPEFADCWENFV-DHEKPLSFNPYKMLEELDKNSRAIKRRLERIKQS
140 150 160 170 180
>>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 (182 aa)
initn: 333 init1: 296 opt: 338 Z-score: 441.4 bits: 88.4 E(32554): 2.9e-18
Smith-Waterman score: 338; 39.1% identity (66.7% similar) in 138 aa overlap (68-200:44-180)
40 50 60 70 80 90
pF1KB3 EVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVDPETHCHAERCFLSWFCDDILSPNTN
: . . .:::: ::.. . . :. .
CCDS54 NNKRRLRRPYYPRKALLCYQLTPQNGSTPTRGYFENKKKCHAEICFINEIKSMGLDETQC
20 30 40 50 60 70
100 110 120 130 140 150
pF1KB3 YEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASV
:.:: : .:::: :: :...:. :...:: ::..:: : : :.:: : . :
CCDS54 YQVTCYLTWSPCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPV
80 90 100 110 120 130
160 170 180 190 200
pF1KB3 KIMGYKDFVSCWKNFVYSDDEP--FKPWKGLQT---NFRLLKRRLREILQ
..::. .:..::.::: . ..: :.:.: :. : : .::::..:
CCDS54 EVMGFPEFADCWENFV-DHEKPLSFNPYKMLEELDKNSRAIKRRLERIKS
140 150 160 170 180
202 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:42:06 2016 done: Fri Nov 4 23:42:06 2016
Total Scan time: 1.980 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]