Result of FASTA (ccds) for pF1KE0553
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0553, 357 aa
  1>>>pF1KE0553 357 - 357 aa - 357 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1683+/-0.00094; mu= 16.6161+/- 0.056
 mean_var=60.4073+/-12.144, 0's: 0 Z-trim(105.0): 30  B-trim: 0 in 0/52
 Lambda= 0.165017
 statistics sampled from 8190 (8215) to 8190 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.252), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22      ( 357) 2581 623.0 1.2e-178
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22      ( 382) 1746 424.3 8.5e-119
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22    ( 373) 1200 294.3 1.1e-79
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22    ( 386)  822 204.3 1.4e-52
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22    ( 199)  804 199.9 1.6e-51
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22     ( 190)  710 177.5 8.2e-45
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22     ( 384)  524 133.4 3.2e-31
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12        ( 198)  355 93.0 2.4e-19
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 182)  336 88.4   5e-18
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 183)  336 88.4 5.1e-18
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 200)  336 88.5 5.5e-18
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6        ( 224)  335 88.2 7.1e-18
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12        ( 188)  313 83.0 2.3e-16
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12         ( 236)  310 82.3 4.6e-16
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22    ( 154)  249 67.7 7.5e-12
CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22    ( 101)  233 63.8 7.3e-11


>>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22           (357 aa)
 initn: 2581 init1: 2581 opt: 2581  Z-score: 3321.1  bits: 623.0 E(32554): 1.2e-178
Smith-Waterman score: 2581; 99.4% identity (99.7% similar) in 357 aa overlap (1-357:1-357)

               10        20        30        40        50        60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS58 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 ELDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ELDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQM
              250       260       270       280       290       300

              310       320       330       340       350       
pF1KE0 LRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
              310       320       330       340       350       

>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22           (382 aa)
 initn: 1746 init1: 1746 opt: 1746  Z-score: 2246.3  bits: 424.3 E(32554): 8.5e-119
Smith-Waterman score: 2521; 92.9% identity (93.2% similar) in 382 aa overlap (1-357:1-382)

               10        20        30        40        50        60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS13 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLCN
              190       200       210       220       230       240

                                       250       260       270     
pF1KE0 E-------------------------LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
       :                         ::::::::::::::::::::::::::::::::::
CCDS13 EAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQEN
              250       260       270       280       290       300

         280       290       300       310       320       330     
pF1KE0 THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 THVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWD
              310       320       330       340       350       360

         340       350       
pF1KE0 GLEEHSQALSGRLRAILQNQGN
       ::::::::::::::::::::::
CCDS13 GLEEHSQALSGRLRAILQNQGN
              370       380  

>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22         (373 aa)
 initn: 1454 init1: 952 opt: 1200  Z-score: 1543.9  bits: 294.3 E(32554): 1.1e-79
Smith-Waterman score: 1504; 59.8% identity (76.6% similar) in 376 aa overlap (1-353:1-373)

               10        20        30        40        50        60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
       :.:..:: .::::::::  :: :.:::  :. .::::::: : : :    :. .::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY
               10        20        30        40         50         

               70        80        90       100       110       120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
        .:..:::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS33 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KE0 ARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF
       ::::::::::::::::::::::::::::: ::::::::::::.::: ::::::::.::::
CCDS33 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF
     120       130       140       150       160       170         

              190          200       210       220             230 
pF1KE0 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGT---W---VLM
       ::::::::::  :.   :  : :.:.:   .  : ...::. .: . . .   :   :. 
CCDS33 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFR
     180       190       200       210       220       230         

                         240        250       260       270        
pF1KE0 DQ-----H-------MGFLCNE-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV
       .:     :       ....:.. :.:   :.:::. :::::    :::::  :: ....:
CCDS33 NQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNV
     240       250       260       270       280         290       

      280       290        300       310       320       330       
pF1KE0 RLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGL
        : ::.::.: . :  :.:.:. : . ::.: :: : .:.:::..::: .  ::.:: ::
CCDS33 NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGL
       300       310       320       330       340       350       

       340       350       
pF1KE0 EEHSQALSGRLRAILQNQGN
       . .   :...:. ::.    
CCDS33 KYNFLFLDSKLQEILE    
       360       370       

>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22         (386 aa)
 initn: 1076 init1: 749 opt: 822  Z-score: 1057.4  bits: 204.3 E(32554): 1.4e-52
Smith-Waterman score: 1482; 58.8% identity (74.0% similar) in 388 aa overlap (1-353:1-386)

               10        20        30        40        50          
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRG---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
               10        20        30        40        50        60

                 60        70        80        90       100        
pF1KE0 ---------QVYFEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL
                .:::. . :::::::::::::.::: . :::::::::.::  ::.:...::
CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KE0 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQF
       .::::::::::::::::: .::.: .: :: .:::::::::::.::::::::: :::: :
CCDS46 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF
              130       140       150       160       170       180

      170       180       190          200       210       220     
pF1KE0 MPWYKFDENYAFLHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDN
       :::::::.::: ::::::::::  :.   :  : :.:.:   .  : ...::. .:   .
CCDS46 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH
              190       200       210       220       230       240

         230                         240        250       260      
pF1KE0 GTWVLM-----------DQH-------MGFLCNE-LDPAQIYRVTWFISWSPCFSWGCAG
        . :.            . :       ....:.. :.:   :.:::. :::::    :::
CCDS46 HSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAG
              250       260       270       280       290          

        270       280        290       300       310       320     
pF1KE0 EVRAFLQENTHVRLRIFAARI-YDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVY
       ::  :: ....: : ::.::. : .:  :.:.:  : . ::.:.:: : .:  :: .:::
CCDS46 EVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVY
      300       310       320       330       340       350        

         330       340       350       
pF1KE0 RQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
        .  ::.:: ::. . . :. ::: :::    
CCDS46 SDDEPFKPWKGLQTNFRLLKRRLREILQ    
      360       370       380          

>>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22         (199 aa)
 initn: 866 init1: 804 opt: 804  Z-score: 1038.6  bits: 199.9 E(32554): 1.6e-51
Smith-Waterman score: 960; 75.6% identity (80.3% similar) in 193 aa overlap (190-357:10-199)

     160       170       180       190       200       210         
pF1KE0 FVYNEGQQFMPWYKFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYE
                                     :.::::  :: ::::    . :..::::::
CCDS13                      MEASPASGPRHLMDPHIFTSNFNNG---IGRHKTYLCYE
                                    10        20           30      

     220       230       240                                250    
pF1KE0 VERLDNGTWVLMDQHMGFLCNE-------------------------LDPAQIYRVTWFI
       :::::::: : :::: ::: :.                         :::::::::::::
CCDS13 VERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFI
         40        50        60        70        80        90      

          260       270       280       290       300       310    
pF1KE0 SWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYD
        100       110       120       130       140       150      

          320       330       340       350       
pF1KE0 EFEYCWDTFVYRQGCPFQPWDGLEEHSQALSGRLRAILQNQGN
       ::..:::::: .:::::::::::.:::::::::::::::::::
CCDS13 EFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQNQGN
        160       170       180       190         

>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22          (190 aa)
 initn: 676 init1: 676 opt: 710  Z-score: 918.0  bits: 177.5 E(32554): 8.2e-45
Smith-Waterman score: 710; 53.9% identity (74.3% similar) in 191 aa overlap (1-190:1-190)

               10        20        30        40         50         
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVK-IKRGRSNLLWDTGVFRGQV
       :::::::::. ::  ::: .:.:      :. ::::. :. ::: :: . : :::::.::
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKR-RSVVSWKTGVFRNQV
               10        20        30        40         50         

      60        70        80        90       100       110         
pF1KE0 YFEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
         : . ::: ::::::: . :     .:.::..::.:::::....::::..: ::.::: 
CCDS13 DSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KE0 AARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA
       .:::::.    :...:  ::: :. :.:::::.: :::::::::... : ::  .  :. 
CCDS13 TARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLKTNFR
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KE0 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC
       .:.: :.: :.                                                 
CCDS13 LLKRRLRESLQ                                                 
     180       190                                                 

>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22          (384 aa)
 initn: 1258 init1: 431 opt: 524  Z-score: 674.0  bits: 133.4 E(32554): 3.2e-31
Smith-Waterman score: 1357; 54.0% identity (71.1% similar) in 387 aa overlap (1-357:1-384)

               10        20        30        40        50        60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
       :.:..:: .::::::::  :: :.:::  :. .::::::: : : :    :. .::::::
CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY
               10        20        30        40         50         

               70         80        90       100       110         
pF1KE0 FEPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
        : .:: :: :. ::    .:   . ...::..::.::  :.  .: ::.: :.::::: 
CCDS13 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
      60        70        80        90       100       110         

     120       130       140           150       160       170     
pF1KE0 AARLYYYWERDYRRALCRLSQA--GAR--VKIMDYEEFAYCWENFVYNEGQQFMPWYKFD
       .:::::.:. ::..::  : :   : :  .:::.:.:: .:: .:::.. . : :: .. 
CCDS13 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KE0 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM
       . : .::  : ::::. ::: ::::::::.: :  :..:::::::::. : ::::..:. 
CCDS13 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
     180       190       200       210       220       230         

         240                                250       260       270
pF1KE0 GFLCNE-------------------------LDPAQIYRVTWFISWSPCFSWGCAGEVRA
       :::::.                         ::  : :::: : :::::::  :: :.  
CCDS13 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK
     240       250       260       270       280       290         

              280       290       300       310       320       330
pF1KE0 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
       :...: :: : ::.::::: .   .:.:. : .:::..:::::.::..:::::: .::::
CCDS13 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP
       300       310       320       330       340       350       

              340       350       
pF1KE0 FQPWDGLEEHSQALSGRLRAILQNQGN
       :::::::.:::: :::::::::::: :
CCDS13 FQPWDGLDEHSQDLSGRLRAILQNQEN
       360       370       380    

>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12             (198 aa)
 initn: 382 init1: 262 opt: 355  Z-score: 460.9  bits: 93.0 E(32554): 2.4e-19
Smith-Waterman score: 420; 35.4% identity (63.5% similar) in 192 aa overlap (12-202:6-193)

               10        20        30        40        50        60
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
                  : :  :  .:.:     ::  :.::: :: . . ...  : : .:..  
CCDS41       MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNK--
                     10        20        30        40        50    

               70        80        90       100       110       120
pF1KE0 FEPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA
            :.:. :: ..   .:   .:...:::.::.:: ::. ..:.::  .::..: : .
CCDS41 --NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFT
               60        70        80        90       100       110

              130        140       150       160       170         
pF1KE0 ARLYYYWERDYR-RALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYA
       ::::.  .:  . ..: :: .::... :: .... :::..:: :. . :  :  . :: .
CCDS41 ARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSV
              120       130       140       150       160       170

     180       190       200       210       220       230         
pF1KE0 FLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGFLC
        : : :..::  :.. : .   :                                     
CCDS41 RLSRQLRRILLPLYEVDDLRDAFRTLGL                                
              180       190                                        

>>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22         (182 aa)
 initn: 305 init1: 305 opt: 336  Z-score: 437.1  bits: 88.4 E(32554): 5e-18
Smith-Waterman score: 336; 32.6% identity (61.1% similar) in 190 aa overlap (9-188:1-180)

               10        20        30            40        50      
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSY----TWLCYEVKIKRGRSNLLWDTGVFR
               :  .  .::  .:.:.  :  : :    . :::..  . : .         :
CCDS54         MALLTAETFRLQFNNKRRLR-RPYYPRKALLCYQLTPQNGSTPT-------R
                       10        20         30        40           

         60          70        80        90       100       110    
pF1KE0 GQVYFEPQY--HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNV
       :  ::: .   :::.::.. . .  :   .:.:.: ...:.:: .:. .:..:.. : ..
CCDS54 G--YFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHL
             50        60        70        80        90       100  

          120       130       140       150       160        170   
pF1KE0 TLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQ-QFMPWY-
       .: : :.::::.: .  ...:  :  . . :..: . ::: :::::: .:   .: :.  
CCDS54 NLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKM
            110       120       130       140       150       160  

              180       190       200       210       220       230
pF1KE0 --KFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVL
         ..:.:   ..: :..:                                          
CCDS54 LEELDKNSRAIKRRLERIKS                                        
            170       180                                          

>>CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22         (183 aa)
 initn: 305 init1: 305 opt: 336  Z-score: 437.0  bits: 88.4 E(32554): 5.1e-18
Smith-Waterman score: 336; 32.6% identity (61.1% similar) in 190 aa overlap (9-188:1-180)

               10        20        30            40        50      
pF1KE0 MNPQIRNPMERMYRDTFYDNFENEPILYGRSY----TWLCYEVKIKRGRSNLLWDTGVFR
               :  .  .::  .:.:.  :  : :    . :::..  . : .         :
CCDS13         MALLTAETFRLQFNNKRRLR-RPYYPRKALLCYQLTPQNGSTPT-------R
                       10        20         30        40           

         60          70        80        90       100       110    
pF1KE0 GQVYFEPQY--HAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNV
       :  ::: .   :::.::.. . .  :   .:.:.: ...:.:: .:. .:..:.. : ..
CCDS13 G--YFENKKKCHAEICFINEIKSMGLDETQCYQVTCYLTWSPCSSCAWELVDFIKAHDHL
             50        60        70        80        90       100  

          120       130       140       150       160        170   
pF1KE0 TLTISAARLYYYWERDYRRALCRLSQAGARVKIMDYEEFAYCWENFVYNEGQ-QFMPWY-
       .: : :.::::.: .  ...:  :  . . :..: . ::: :::::: .:   .: :.  
CCDS13 NLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADCWENFVDHEKPLSFNPYKM
            110       120       130       140       150       160  

              180       190       200       210       220       230
pF1KE0 --KFDENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVL
         ..:.:   ..: :..:                                          
CCDS13 LEELDKNSRAIKRRLERIKQS                                       
            170       180                                          




357 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:41:09 2016 done: Wed Nov  2 23:41:10 2016
 Total Scan time:  1.980 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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