Result of FASTA (omim) for pF1KB5971
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5971, 518 aa
  1>>>pF1KB5971 518 - 518 aa - 518 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8652+/-0.00035; mu= 11.0970+/- 0.022
 mean_var=115.4235+/-23.042, 0's: 0 Z-trim(117.4): 29  B-trim: 197 in 1/56
 Lambda= 0.119379
 statistics sampled from 29340 (29369) to 29340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.344), width:  16
 Scan time: 10.680

The best scores are:                                      opt bits E(85289)
NP_055296 (OMIM: 300773) DNA-(apurinic or apyrimid ( 518) 3553 623.0 6.5e-178
NP_001258677 (OMIM: 300773) DNA-(apurinic or apyri ( 347) 2411 426.2 7.5e-119
NP_542379 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318)  187 43.2  0.0014
NP_001632 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318)  187 43.2  0.0014
NP_001231178 (OMIM: 107748) DNA-(apurinic or apyri ( 318)  187 43.2  0.0014
NP_542380 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318)  187 43.2  0.0014


>>NP_055296 (OMIM: 300773) DNA-(apurinic or apyrimidinic  (518 aa)
 initn: 3553 init1: 3553 opt: 3553  Z-score: 3315.2  bits: 623.0 E(85289): 6.5e-178
Smith-Waterman score: 3553; 100.0% identity (100.0% similar) in 518 aa overlap (1-518:1-518)

               10        20        30        40        50        60
pF1KB5 MLRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLRVVSWNINGIRRPLQGVANQEPSNCAAVAVGRILDELDADIVCLQETKVTRDALTEPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AIVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AIVEGYNSYFSFSRNRSGYSGVATFCKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 QEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 GSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 NQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNLKSYFQPSPSCPQASPDIELPSLPLMSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNLKSYFQPSPSCPQASPDIELPSLPLMSA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 LMTPKTPEEKAVAKVVKGQAKTSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LMTPKTPEEKAVAKVVKGQAKTSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRT
              430       440       450       460       470       480

              490       500       510        
pF1KB5 VKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWSRPS
       ::::::::::::::::::::::::::::::::::::::
NP_055 VKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLWSRPS
              490       500       510        

>>NP_001258677 (OMIM: 300773) DNA-(apurinic or apyrimidi  (347 aa)
 initn: 2411 init1: 2411 opt: 2411  Z-score: 2254.7  bits: 426.2 E(85289): 7.5e-119
Smith-Waterman score: 2411; 100.0% identity (100.0% similar) in 347 aa overlap (172-518:1-347)

             150       160       170       180       190       200 
pF1KB5 TWEGKEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTA
                                     ::::::::::::::::::::::::::::::
NP_001                               MRFYRLLQIRAEALLAAGSHVIILGDLNTA
                                             10        20        30

             210       220       230       240       250       260 
pF1KB5 HRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCW
               40        50        60        70        80        90

             270       280       290       300       310       320 
pF1KB5 SAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQC
              100       110       120       130       140       150

             330       340       350       360       370       380 
pF1KB5 PPLCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPLCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQP
              160       170       180       190       200       210

             390       400       410       420       430       440 
pF1KB5 SQVGSSRGQKNLKSYFQPSPSCPQASPDIELPSLPLMSALMTPKTPEEKAVAKVVKGQAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQVGSSRGQKNLKSYFQPSPSCPQASPDIELPSLPLMSALMTPKTPEEKAVAKVVKGQAK
              220       230       240       250       260       270

             450       460       470       480       490       500 
pF1KB5 TSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSEAKDEKELRTSFWKSVLAGPLRTPLCGGHREPCVMRTVKKPGPNLGRRFYMCARPRGP
              280       290       300       310       320       330

             510        
pF1KB5 PTDPSSRCNFFLWSRPS
       :::::::::::::::::
NP_001 PTDPSSRCNFFLWSRPS
              340       

>>NP_542379 (OMIM: 107748) DNA-(apurinic or apyrimidinic  (318 aa)
 initn: 276 init1: 107 opt: 187  Z-score: 185.2  bits: 43.2 E(85289): 0.0014
Smith-Waterman score: 285; 26.9% identity (51.9% similar) in 320 aa overlap (2-313:62-318)

                                            10             20      
pF1KB5                              MLRVVSWNINGIR-----RPLQGVANQEPSN
                                     :.. :::..:.:     . :. : .. :  
NP_542 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAP--
              40        50        60        70        80           

         30        40        50        60         70        80     
pF1KB5 CAAVAVGRILDELDADIVCLQETKVTRDALTEPLAIVEGYN-SYFSFSRNRSGYSGVATF
                      ::.:::::: ... :   :  . : . .:.:   .. :::::   
NP_542 ---------------DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGV---
                     90       100       110       120       130    

          90       100       110       120       130       140     
pF1KB5 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG
                      ::.. :      ::  ::   :.    :.:::.....        
NP_542 ---------------GLLSRQCPLKVSYGIGDE---EH----DQEGRVIVAEF-------
                            140          150           160         

         150       160       170       180       190       200     
pF1KB5 KEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI
          ...:...: :.:  :   :: ...:. . ..   ..: :. . ... ::::.::. :
NP_542 --DSFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEI
              170       180        190        200       210        

         210       220       230         240       250       260   
pF1KB5 DHWDAVNLECFEEDPGRKWMDSLLSN--LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSA
       :         ...  : :   ..  .   :     .. :. ::.: . :.   :.: :. 
NP_542 D---------LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY
               220       230       240       250       260         

           270       280       290       300       310       320   
pF1KB5 VTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPP
       . .::  : : :::: : ...: . ..  : .  ...::::::.   :..          
NP_542 MMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL          
     270       280       290        300       310                  

           330       340       350       360       370       380   
pF1KB5 LCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQ

>>NP_001632 (OMIM: 107748) DNA-(apurinic or apyrimidinic  (318 aa)
 initn: 276 init1: 107 opt: 187  Z-score: 185.2  bits: 43.2 E(85289): 0.0014
Smith-Waterman score: 285; 26.9% identity (51.9% similar) in 320 aa overlap (2-313:62-318)

                                            10             20      
pF1KB5                              MLRVVSWNINGIR-----RPLQGVANQEPSN
                                     :.. :::..:.:     . :. : .. :  
NP_001 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAP--
              40        50        60        70        80           

         30        40        50        60         70        80     
pF1KB5 CAAVAVGRILDELDADIVCLQETKVTRDALTEPLAIVEGYN-SYFSFSRNRSGYSGVATF
                      ::.:::::: ... :   :  . : . .:.:   .. :::::   
NP_001 ---------------DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGV---
                     90       100       110       120       130    

          90       100       110       120       130       140     
pF1KB5 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG
                      ::.. :      ::  ::   :.    :.:::.....        
NP_001 ---------------GLLSRQCPLKVSYGIGDE---EH----DQEGRVIVAEF-------
                            140          150           160         

         150       160       170       180       190       200     
pF1KB5 KEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI
          ...:...: :.:  :   :: ...:. . ..   ..: :. . ... ::::.::. :
NP_001 --DSFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEI
              170       180        190        200       210        

         210       220       230         240       250       260   
pF1KB5 DHWDAVNLECFEEDPGRKWMDSLLSN--LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSA
       :         ...  : :   ..  .   :     .. :. ::.: . :.   :.: :. 
NP_001 D---------LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY
               220       230       240       250       260         

           270       280       290       300       310       320   
pF1KB5 VTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPP
       . .::  : : :::: : ...: . ..  : .  ...::::::.   :..          
NP_001 MMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL          
     270       280       290        300       310                  

           330       340       350       360       370       380   
pF1KB5 LCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQ

>>NP_001231178 (OMIM: 107748) DNA-(apurinic or apyrimidi  (318 aa)
 initn: 276 init1: 107 opt: 187  Z-score: 185.2  bits: 43.2 E(85289): 0.0014
Smith-Waterman score: 285; 26.9% identity (51.9% similar) in 320 aa overlap (2-313:62-318)

                                            10             20      
pF1KB5                              MLRVVSWNINGIR-----RPLQGVANQEPSN
                                     :.. :::..:.:     . :. : .. :  
NP_001 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAP--
              40        50        60        70        80           

         30        40        50        60         70        80     
pF1KB5 CAAVAVGRILDELDADIVCLQETKVTRDALTEPLAIVEGYN-SYFSFSRNRSGYSGVATF
                      ::.:::::: ... :   :  . : . .:.:   .. :::::   
NP_001 ---------------DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGV---
                     90       100       110       120       130    

          90       100       110       120       130       140     
pF1KB5 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG
                      ::.. :      ::  ::   :.    :.:::.....        
NP_001 ---------------GLLSRQCPLKVSYGIGDE---EH----DQEGRVIVAEF-------
                            140          150           160         

         150       160       170       180       190       200     
pF1KB5 KEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI
          ...:...: :.:  :   :: ...:. . ..   ..: :. . ... ::::.::. :
NP_001 --DSFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEI
              170       180        190        200       210        

         210       220       230         240       250       260   
pF1KB5 DHWDAVNLECFEEDPGRKWMDSLLSN--LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSA
       :         ...  : :   ..  .   :     .. :. ::.: . :.   :.: :. 
NP_001 D---------LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY
               220       230       240       250       260         

           270       280       290       300       310       320   
pF1KB5 VTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPP
       . .::  : : :::: : ...: . ..  : .  ...::::::.   :..          
NP_001 MMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL          
     270       280       290        300       310                  

           330       340       350       360       370       380   
pF1KB5 LCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQ

>>NP_542380 (OMIM: 107748) DNA-(apurinic or apyrimidinic  (318 aa)
 initn: 276 init1: 107 opt: 187  Z-score: 185.2  bits: 43.2 E(85289): 0.0014
Smith-Waterman score: 285; 26.9% identity (51.9% similar) in 320 aa overlap (2-313:62-318)

                                            10             20      
pF1KB5                              MLRVVSWNINGIR-----RPLQGVANQEPSN
                                     :.. :::..:.:     . :. : .. :  
NP_542 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAP--
              40        50        60        70        80           

         30        40        50        60         70        80     
pF1KB5 CAAVAVGRILDELDADIVCLQETKVTRDALTEPLAIVEGYN-SYFSFSRNRSGYSGVATF
                      ::.:::::: ... :   :  . : . .:.:   .. :::::   
NP_542 ---------------DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGV---
                     90       100       110       120       130    

          90       100       110       120       130       140     
pF1KB5 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG
                      ::.. :      ::  ::   :.    :.:::.....        
NP_542 ---------------GLLSRQCPLKVSYGIGDE---EH----DQEGRVIVAEF-------
                            140          150           160         

         150       160       170       180       190       200     
pF1KB5 KEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI
          ...:...: :.:  :   :: ...:. . ..   ..: :. . ... ::::.::. :
NP_542 --DSFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEI
              170       180        190        200       210        

         210       220       230         240       250       260   
pF1KB5 DHWDAVNLECFEEDPGRKWMDSLLSN--LGCQSASHVGPFIDSYRCFQPKQEGAFTCWSA
       :         ...  : :   ..  .   :     .. :. ::.: . :.   :.: :. 
NP_542 D---------LRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTY
               220       230       240       250       260         

           270       280       290       300       310       320   
pF1KB5 VTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPP
       . .::  : : :::: : ...: . ..  : .  ...::::::.   :..          
NP_542 MMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL          
     270       280       290        300       310                  

           330       340       350       360       370       380   
pF1KB5 LCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQ




518 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:41:24 2016 done: Fri Nov  4 21:41:25 2016
 Total Scan time: 10.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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