Result of FASTA (omim) for pF1KB6453
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6453, 318 aa
  1>>>pF1KB6453 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5218+/-0.000302; mu= 15.5990+/- 0.019
 mean_var=78.4168+/-15.335, 0's: 0 Z-trim(118.4): 7  B-trim: 209 in 1/51
 Lambda= 0.144834
 statistics sampled from 31306 (31312) to 31306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.367), width:  16
 Scan time:  7.740

The best scores are:                                      opt bits E(85289)
NP_542380 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318) 2175 463.5 2.6e-130
NP_542379 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318) 2175 463.5 2.6e-130
NP_001632 (OMIM: 107748) DNA-(apurinic or apyrimid ( 318) 2175 463.5 2.6e-130
NP_001231178 (OMIM: 107748) DNA-(apurinic or apyri ( 318) 2175 463.5 2.6e-130
NP_001258677 (OMIM: 300773) DNA-(apurinic or apyri ( 347)  185 47.7 4.2e-05
NP_055296 (OMIM: 300773) DNA-(apurinic or apyrimid ( 518)  187 48.2 4.3e-05


>>NP_542380 (OMIM: 107748) DNA-(apurinic or apyrimidinic  (318 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2460.4  bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_542 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
              250       260       270       280       290       300

              310        
pF1KB6 RSKALGSDHCPITLYLAL
       ::::::::::::::::::
NP_542 RSKALGSDHCPITLYLAL
              310        

>>NP_542379 (OMIM: 107748) DNA-(apurinic or apyrimidinic  (318 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2460.4  bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_542 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
              250       260       270       280       290       300

              310        
pF1KB6 RSKALGSDHCPITLYLAL
       ::::::::::::::::::
NP_542 RSKALGSDHCPITLYLAL
              310        

>>NP_001632 (OMIM: 107748) DNA-(apurinic or apyrimidinic  (318 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2460.4  bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
              250       260       270       280       290       300

              310        
pF1KB6 RSKALGSDHCPITLYLAL
       ::::::::::::::::::
NP_001 RSKALGSDHCPITLYLAL
              310        

>>NP_001231178 (OMIM: 107748) DNA-(apurinic or apyrimidi  (318 aa)
 initn: 2175 init1: 2175 opt: 2175  Z-score: 2460.4  bits: 463.5 E(85289): 2.6e-130
Smith-Waterman score: 2175; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KB6 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 APSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 APSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKI
              250       260       270       280       290       300

              310        
pF1KB6 RSKALGSDHCPITLYLAL
       ::::::::::::::::::
NP_001 RSKALGSDHCPITLYLAL
              310        

>>NP_001258677 (OMIM: 300773) DNA-(apurinic or apyrimidi  (347 aa)
 initn: 203 init1: 107 opt: 185  Z-score: 212.6  bits: 47.7 E(85289): 4.2e-05
Smith-Waterman score: 185; 31.5% identity (57.7% similar) in 130 aa overlap (199-318:15-142)

      170       180       190       200       210       220        
pF1KB6 TAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKK
                                     ::. . ... ::::.::. ::  .   : .
NP_001                 MRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAV-NLE
                               10        20        30        40    

      230       240                250       260       270         
pF1KB6 NAGFTPQERQGFGELLQAV---------PLADSFRHLYPNTPYAYTFWTYMMNARSKNVG
            :  :. .  ::. .         :. ::.: . :.   :.: :. . .::  : :
NP_001 CFEEDPG-RKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYG
            50         60        70        80        90       100  

     280       290        300       310                            
pF1KB6 WRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL                    
        :::: : ...: . ..  : .  ...::::::.   :..                    
NP_001 SRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPPLCTRFLPEFA
            110       120       130       140       150       160  

NP_001 GTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQVGSSRGQKNL
            170       180       190       200       210       220  

>>NP_055296 (OMIM: 300773) DNA-(apurinic or apyrimidinic  (518 aa)
 initn: 276 init1: 107 opt: 187  Z-score: 212.4  bits: 48.2 E(85289): 4.3e-05
Smith-Waterman score: 280; 27.2% identity (51.9% similar) in 320 aa overlap (62-318:2-313)

              40        50        60        70        80           
pF1KB6 KNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAP--
                                     :.. :::..:.:     . :. : .. :  
NP_055                              MLRVVSWNINGIR-----RPLQGVANQEPSN
                                            10             20      

                     90       100       110       120       130    
pF1KB6 ---------------DILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGV---
                      ::.:::::: ... :   :  . : . .:.:   .. :::::   
NP_055 CAAVAVGRILDELDADIVCLQETKVTRDALTEPLAIVEGYN-SYFSFSRNRSGYSGVATF
         30        40        50        60         70        80     

                            140           150          160         
pF1KB6 ---------------GLLSRQCPLKVSYG----IGEEEH---DQEGRVIVAEFD------
                      ::.. :      ::    . .::    :.:::.....        
NP_055 CKDNATPVAAEEGLSGLFATQNGDVGCYGNMDEFTQEELRALDSEGRALLTQHKIRTWEG
          90       100       110       120       130       140     

              170       180        190        200       210        
pF1KB6 ---SFVLVTAYVPNAGRGLV-RLEYRQRWDEAFRKFLKGL-ASRKPLVLCGDLNVAHEEI
          ...:...: :.:  :   :: ...:. . ..   ..: :. . ... ::::.::. :
NP_055 KEKTLTLINVYCPHADPGRPERLVFKMRFYRLLQIRAEALLAAGSHVIILGDLNTAHRPI
         150       160       170       180       190       200     

      220       230       240                250       260         
pF1KB6 DLRNPKGNKKNAGFTPQERQGFGELLQAV---------PLADSFRHLYPNTPYAYTFWTY
       :  .   : .     :  :. .  ::. .         :. ::.: . :.   :.: :. 
NP_055 DHWDAV-NLECFEEDPG-RKWMDSLLSNLGCQSASHVGPFIDSYRCFQPKQEGAFTCWSA
         210        220        230       240       250       260   

     270       280       290        300       310                  
pF1KB6 MMNARSKNVGWRLDYFLLSHSL-LPALCDSKIRSKALGSDHCPITLYLAL          
       . .::  : : :::: : ...: . ..  : .  ...::::::.   :..          
NP_055 VTGARHLNYGSRLDYVLGDRTLVIDTFQASFLLPEVMGSDHCPVGAVLSVSSVPAKQCPP
           270       280       290       300       310       320   

NP_055 LCTRFLPEFAGTQLKILRFLVPLEQSPVLEQSTLQHNNQTRVQTCQNKAQVRSTRPQPSQ
           330       340       350       360       370       380   




318 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:00:06 2016 done: Fri Nov  4 23:00:07 2016
 Total Scan time:  7.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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