GENSCAN 1.0	Date run:  3-Nov-116	Time: 14:51:44

Sequence gi568815578r:772963_1016214 : 243252 bp : 48.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    316    311    6                               1.05
 1.02 Term -   3981   3747  235  2  1  120   49   168 0.933  11.89
 1.01 Init -  23816  23644  173  2  2  101   84   105 0.124  10.32
 1.00 Prom -  40509  40470   40                              -2.16

 2.00 Prom +  41056  41095   40                              -4.26
 2.01 Init +  43395  43446   52  2  1   57  110    26 0.486   3.03
 2.02 Intr +  51955  52128  174  2  0   54   70    82 0.217   2.91
 2.03 Intr +  60777  60989  213  1  0   87   94   125 0.780  11.69
 2.04 Term +  61365  61540  176  1  2  108   43    16 0.777  -2.98
 2.05 PlyA +  63060  63065    6                               1.05

 3.05 PlyA -  64979  64974    6                               1.05
 3.04 Term -  65475  65285  191  1  2  107   41    37 0.361  -1.49
 3.03 Intr -  67044  66652  393  1  0   -1   98   411 0.189  27.83
 3.02 Intr -  69187  68919  269  0  2   53   97   107 0.235   5.28
 3.01 Init -  69603  69545   59  0  2   93   75    47 0.911   3.20
 3.00 Prom -  70545  70506   40                              -7.06

 4.00 Prom +  71310  71349   40                             -15.08
 4.01 Sngl +  71843  72730  888  1  0   99   48   978 0.956  88.99
 4.02 PlyA +  73290  73295    6                               1.05

 5.04 PlyA -  74209  74204    6                               1.05
 5.03 Term -  92330  92146  185  0  2   58   45   128 0.420   3.21
 5.02 Intr -  95876  95669  208  2  1   61   94   130 0.591   9.55
 5.01 Init -  96515  96333  183  2  0   85   92    10 0.773   0.28
 5.00 Prom -  97641  97602   40                              -6.76

 6.12 PlyA -  97879  97874    6                               1.05
 6.11 Term - 100158  99998  161  1  2   89   43   290 0.998  22.70
 6.10 Intr - 101452 101322  131  0  2   78   92   152 0.998  14.94
 6.09 Intr - 102527 102381  147  1  0   51    9   142 0.436   1.95
 6.08 Intr - 105365 105199  167  2  2  122   94   150 0.987  17.76
 6.07 Intr - 106886 106785  102  2  0   98   68    79 0.934   7.27
 6.06 Intr - 108324 108209  116  1  2  121   72   120 0.970  13.87
 6.05 Intr - 112363 112116  248  0  2  114  100   466 0.991  47.50
 6.04 Intr - 115477 115356  122  1  2   48   94   164 0.975  12.29
 6.03 Intr - 117406 117251  156  1  0  106   92   240 0.745  26.41
 6.02 Intr - 140028 139936   93  0  0  111   80    43 0.831   5.96
 6.01 Init - 143234 142944  291  2  0   75  102   157 0.524  11.19
 6.00 Prom - 143407 143368   40                              -2.46

 7.16 PlyA - 147298 147293    6                               1.05
 7.15 Term - 147720 147590  131  1  2   78   38    29 0.194  -4.76
 7.14 Intr - 147980 147878  103  2  1  103  116    -9 0.248   3.15
 7.13 Intr - 167564 167264  301  1  1   80  119    93 0.032   8.34
 7.12 Intr - 183697 183556  142  2  1  112   30    81 0.138   4.11
 7.11 Intr - 184047 183920  128  2  2   50   72    26 0.229  -2.48
 7.10 Intr - 186820 186570  251  1  2   69   99    51 0.383   0.54
 7.09 Intr - 187504 187428   77  2  2   93   58    67 0.464   3.43
 7.08 Intr - 190156 190073   84  2  0   33   91    67 0.478   1.29
 7.07 Intr - 191158 190973  186  2  0  112   83    35 0.780   5.06
 7.06 Intr - 194352 194212  141  1  0   85   96   122 0.883  13.02
 7.05 Intr - 195176 194988  189  0  0   83   68   371 0.995  34.16
 7.04 Intr - 207413 207348   66  0  0  101   82    34 0.014   2.98
 7.03 Intr - 213485 213318  168  0  0  122   55    36 0.006   3.62
 7.02 Intr - 229381 229124  258  2  0   65   82   288 0.992  23.33
 7.01 Init - 235037 234974   64  2  1   55  103    49 0.333   4.41

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term + 212765 212816   52  2  1  103   42    56 0.821  -0.60


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_1|135_aa
MDNSYFFRQLKIIQCLGEQLLVNKVLTFTINETSFSPNFPKCMGHSKGIPGICIDVVLFF
ADLTPMAPPKPDVSTRTANPAPVAPPPKAIQPVGAQLQPPMISSPPQPISSKHLLPGHPQ
LFPYTAFEKPLTYKL

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_1|408_bp
atggacaatagctatttcttccggcaactgaagattattcaatgcttgggtgaacagctc
cttgtgaacaaggtcttgacctttactattaatgagacctcgttcagtccaaattttccc
aaatgtatgggccactccaaaggcatacctggaatctgtatagatgtggttctgtttttt
gcagatttgacacccatggctccacctaaacctgatgtctccaccaggaccgccaaccct
gctcctgtggccccccccccaaaagcgattcagcctgtaggagcacagcttcaaccccct
atgatttcatctccaccccaaccaatcagcagcaagcacctgttacctggccacccccaa
ctcttcccctatactgcctttgaaaaacccctcacctacaagctttga

>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_2|204_aa
MWEKKAERGPSEGASTPGSVLKALPASFQRLDVTSYIVGEIIVPIKDGPTVWLSQWGMSS
DLECSHRKLGPILSEGTFPAVGAFDSEGHPLSSTAEGSSKGDPKGAHAGLGPPGRRWERP
LPARVRAVSLSKACARGAGTRLARAPVRGWTRLIWRLSVYGDRGPLFGDRTGLTFLGWMQ
GQQILQPPEPLLASWESSPVWGRE

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_2|615_bp
atgtgggagaagaaggcagagagagggccttctgagggggcctccacgccaggctctgtg
ctaaaagctttgccagcatcatttcagagacttgatgtgacatcttacatcgtaggggaa
attattgttcccattaaagatgggcccacagtgtggctaagccagtggggcatgtcctca
gacctggagtgctcccataggaagctgggcccgattctttctgaagggactttccctgcg
gtgggggccttcgacagtgagggccacccgctcagctcgaccgcggagggcagctccaaa
ggggaccccaaaggtgcccacgcggggctggggcctcctgggcgtcgttgggagcggcca
ctaccggcccgggtccgagctgtcagcctctccaaagcctgcgcgagaggagccgggaca
cgcctagcgcgggctccagtccggggttggactcggctcatttggcgcctttctgtctac
ggggacagaggaccactctttggggatcggacgggactgacatttctgggctggatgcag
gggcagcagattctccagcccccagagccgctgctggcctcttgggaatcatccccagtt
tggggaagggaatag

>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_3|303_aa
MEWMGKEASLHQGRPPGDLRLGYLIRETRLKIDLPEPPGHDKDGEIKQVEGFPRHLAKRR
SHEPGSWSSRRFRLTKSTDHPHAGVSKQAPRGSVPAHTADKAGPRQRLIAPAPDPTAAKM
LMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQ
FAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATLHLPPEIVPATLHRSRPETGRPRPKGLE
GTKHEEIPLNNRLFWTQPTSKAKATHQEVYIKCIKLFLISVRKREERKRGRKKGEKVKHI
CQE

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_3|912_bp
atggagtggatgggaaaggaagcctcgctccaccagggccgacccccaggagacctcaga
ctcggttaccttatccgtgaaacgaggttaaaaatagaccttcctgagcctccaggtcac
gataaggatggagagatcaaacaggtcgagggctttcctcggcatctggcaaaaaggcgg
agccacgaaccaggctcctggtcttcaagaagatttcgactaaccaagtccacagaccac
ccccacgcaggggtctctaagcaagccccacgagggtctgtcccagcccacaccgcggac
aaagcaggcccaagacagaggctgatcgccccagccccggaccctacagctgccaagatg
ctgatgcctaagaagaaccggattgccattcatgaactcctttttaaggagggagtcatg
gtggccaagaaggatgtccacatgcctaagcacccggagctggcagacaagaatgtgccc
aaccttcacgtcatgaaggccatgcagtctctcaagtcccggggctgcgtgaaggaacag
tttgcctggagacatttctactggtaccttaccaatgagggtagccagtatctccgtgat
taccttcatctgcccccagagattgttcctgccaccctacatctgcccccggagattgtt
cctgccaccctacaccgcagccgtccagagactggcaggcctcggcctaaaggtctggag
gggaccaaacacgaggaaataccgttgaacaaccggctgttctggacccagcccacctca
aaggccaaggccactcatcaagaggtatatattaaatgtataaagctttttcttatatca
gtaagaaagagagaagaaagaaagagaggaagaaagaaaggagagaaagttaaacatatc
tgtcaagaataa

>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_4|295_aa
MPVHTLSPGAPSAPALPCRLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVA
NTRQEPVQPLLSKQPLFSPETRRTVLTPSRRALPGPCRRPQLDLDILSSLIDLCDSPVSP
AEASRTPGRAEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASSPAR
PPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASSDIVSLAGPSAG
PGSSEGGCSRRSSVTVEERARERVPYGVSVVERNARVIKWLYGLRQARESPAAEG

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_4|888_bp
atgcctgtgcacacgctgagccccggagccccgtccgcccccgccctaccttgccgcctg
cggaccagggtccctggctacctgctacgggggccggcagatggtggagcccggaaaccg
agcgctgtggagcgcctggaggccgacaaggccaagtacgtcaagagcctgcacgtggcc
aacacccgccaggagcctgtgcagcccctgctgtccaaacagccgctctttagccctgag
actcgccgcacagtgctcacgcccagccgccgagccctgcctggcccctgccgacggccc
cagctggacctggacatcctcagcagcctcatcgacttgtgtgacagccccgtgtcccct
gccgaggccagccgcactcctggacgggccgagggagccggccgtcctcccccagccacc
cctccgcgaccgccgcccagtacctctgcggtccgccgggtggacgtccgccccctgccc
gcctcgcctgcccggccctgcccatcacccggccctgccgccgcctccagcccagcccgg
ccgccgggtttgcaacgctccaagtcggacttgagcgagcgcttttctagggcagccgct
gatctcgagcgcttttttaacttctgcggcctggacccggaggaggcgagagggttgggt
gtggcccacctggcacgggccagctcggatatcgtgtccctggcagggcccagtgctggg
ccgggcagctctgaagggggctgctcccgccgcagctcggtgactgttgaggagcgggcc
cgggagcgcgttccctatggcgtgtcggtggtggagcgcaatgcccgcgtgatcaagtgg
ttgtatgggctaaggcaggctcgggagagcccagcagctgaaggctag

>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_5|191_aa
MAADKTNLRILGSTRHCRGHGWCGLEPRLGLLGATAHRCQPLGYLHLRVPMENTCHLSLH
QSTLGIWASTTKLVYQGQEELPGKASKTTQSLPLALDGSIISEISALFPAKAVSTLGREF
PEYTPETTTTGAQMRMCVLRFNTGTYSATTDVSSGPSQQPGITHVPTEDVFGIAFCCFSA
AFLLLRPHELA

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_5|576_bp
atggctgcagacaagaccaacctgaggatcctgggcagcacaaggcactgtagagggcac
ggctggtgtggtctcgagcctagactgggtctcctgggggccacagctcataggtgccag
cctctaggatacctgcatctgcgggttcctatggaaaacacttgtcacctctccctgcac
cagagcactctgggcatctgggcatctaccaccaaactcgtgtaccaagggcaggaggaa
cttcctggaaaggcctccaagaccactcagtctctcccactggcacttgatggatccatc
atttctgagatctctgcgttgttcccagcaaaggcagtttccacactggggagagagttc
cctgagtacaccccagagacaaccaccacaggtgcccagatgcgcatgtgtgtgctgagg
ttcaacactggaacttattcagctacaacagatgtgtcctctgggccctcgcagcaacct
ggtataacacacgtgcctacagaggatgtgtttggcatcgcattctgctgcttttctgct
gcttttctgcttcttcgaccacatgaattggcttag

>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_6|577_aa
MLQGSLLLVVATMSVAQQTRQEADRGCETLVVQHGHCSYTFLLPKSEPCPPGPEVSRDSN
TLQRESLANPLHLGKLPTQQVKQLEQALQNNTQWLKKCTGEETGQRGKVTCQSHVAVKAN
LDSHYKLQLERAIKTILRSKLEQVQQQMAQNQTAPMLELGTSLLNQTTAQIRKLTDMEAQ
LLNQTSRMDAQMPETFLSTNKLENQLLLQRQKLQQLQGQNSALEKRLQALETKQQEELAS
ILSKKAKLLNTLSRQSAALTNIERGLRGVRHNSSLLQDQQHSLRQLLVLLRHLVQERANA
SAPAFIMAGEQVFQDCAEIQRSGASASGVYTIQVSNATKPRKVFCDLQSSGGRWTLIQRR
ENGTVNFQRNWKDYKQGFGDPAGEHWLGNEVVHQLTRRAAYSLRVELQDWEGHEAYAQYE
HFHLGSENQLYRSHGLHHQAGLDMPTKATEPGKEIEILTWLAADVEAAELGCPGAQIHGG
WLSVVGYSGSAGRQSSLVLQNTSFSTLDSDNDHCLCKCAQVMSGGWWFDACGLSNLNGVY
YHAPDNKYKMDGIRWHYFKGPSYSLRASRMMIRPLDI

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_6|1734_bp
atgctgcagggcagcctcctccttgtggttgccaccatgtctgtggctcaacagacaagg
caggaggcggataggggctgcgagacacttgtagtccagcacggccactgtagctacacc
ttcttgctgcccaagtctgagccctgccctccggggcctgaggtctccagggactccaac
accctccagagagaatcactggccaacccactgcacctggggaagttgcccacccagcag
gtgaaacagctggagcaggcactgcagaacaacacgcagtggctgaagaagtgtacaggt
gaggaaacaggccagagagggaaagtgacttgccagagccatgtagcagtgaaagccaat
ctggattctcactacaaactgcagctagagagggccatcaagacgatcttgaggtcgaag
ctggagcaggtccagcagcaaatggcccagaatcagacggcccccatgctagagctgggc
accagcctcctgaaccagaccactgcccagatccgcaagctgaccgacatggaggctcag
ctcctgaaccagacatcaagaatggatgcccagatgccagagacctttctgtccaccaac
aagctggagaaccagctgctgctacagaggcagaagctccagcagcttcagggccaaaac
agcgcgctcgagaagcggttgcaggccctggagaccaagcagcaggaggagctggccagc
atcctcagcaagaaggcgaagctgctgaacacgctgagccgccagagcgccgccctcacc
aacatcgagcgcggcctgcgcggtgtcaggcacaactccagcctcctgcaggaccagcag
cacagcctgcgccagctgctggtgttgttgcggcacctggtgcaagaaagggctaacgcc
tcggccccggccttcataatggcaggtgagcaggtgttccaggactgtgcagagatccag
cgctctggggccagtgccagtggtgtctacaccatccaggtgtccaatgcaacgaagccc
aggaaggtgttctgtgacctgcagagcagtggaggcaggtggaccctcatccagcgccgt
gagaatggcaccgtgaattttcagcggaactggaaggattacaaacagggcttcggagac
ccagctggggagcactggctgggcaatgaagtggtgcaccagctcaccagaagggcagcc
tactctctgcgtgtggagctgcaagactgggaaggccacgaggcctatgcccagtacgaa
catttccacctgggcagtgagaaccagctatacagatctcatggtcttcatcaccaggca
ggcttggacatgcccaccaaggccacagagcctggcaaagaaatagaaatcctcacctgg
ctggcagcagatgtcgaagctgcagagctggggtgccctggagcccagatccatgggggc
tggctttctgtggtcgggtacagcggctcagcagggcgccagagcagcctggtcctgcag
aacaccagctttagcacccttgactcagacaacgaccactgtctctgcaagtgtgcccaa
gtgatgtctggagggtggtggtttgacgcctgtggcctgtcaaacctcaacggcgtctac
taccacgctcccgacaacaagtacaagatggacggcatccgctggcactacttcaagggc
cccagctactcactgcgtgcctctcgcatgatgatacggcctttggacatctaa

>gi568815578r:772963_1016214|GENSCAN_predicted_peptide_7|762_aa
MSMLITLTRHMAGSSSKFDKAGQCPGSANALTRPGGRTDPRLADAPGAPTAAPAPAVPPP
GRGALGPSGRLGSASPDPAAQMRAPLCLLLLVAHAVDMLALNRRKKQGRYVMLSHSLLSS
LWVDFSPVCWGAEEGMGIETAVTTLMLLWPPQFPVLENSGAITSEVKRTPKKASAQHWEL
SKASVVGTGLGGNCTGCIICSEENGCSTCQQRLFLFIRREGIRQYGKCLHDCPPGYFGIR
GQEVNRCKKCGATCESCFSQDFCIRCKRQFYLYKGKCLPTCPPGTLAHQNTRECQGECEL
GPWGGWSPCTHNGKTCGSAWGLESRVREAGRAGHEEAATCQVLSESRKCPIQRPCPGDHY
TYFQNVSGGYEGPLIYIEERPQGVLERSPGQKKGRKDRRPRKDRKLDRRLDSPEAISTAF
SHQPPRGAGWTRLQGFQRPGLDTSPSWPWRVTTWPLGGQPALEGILCKLPATLIGTPPQA
SLSWVPCPFFPSRISLSHILWRIEGPLWEGDSAVRWASPTPFLQAKLGEVHREAQKQALH
VIPTCCHRMTAVNQEQVAARLVKERISETGSCCGSLLAGLEQGGGLDVMVIMGCSLAVKA
GGLKDNLVPTPQCGCRWLFRPPHLPPSAFAGAHMECPPGLTVLQTFTGAPQAVHVGNVRK
PKRHHAPNTKEVFSLLTKSPTWVPLEQEVLFFQENRFQHVTLGKWPPSLSISFLMSEMQG
FLERHCTPPLVPSDPVRLTCSKAPGLDTGSSLTIHSSSFLWL

>gi568815578r:772963_1016214|GENSCAN_predicted_CDS_7|2289_bp
atgtctatgctcatcacacttactcggcatatggctggaagttctagcaagtttgataaa
gcagggcagtgccccggctccgccaacgccctcactagacctggcggccggaccgacccg
cgcctggcggatgcgcccggcgcgcccacagcagcccccgcgcccgccgtgccgccgccg
ggacgtggggcccttgggccgtcgggccgcctggggagcgccagcccggatccggctgcc
cagatgcgggcgccactctgcctgctcctgctcgtcgcccacgccgtggacatgctcgcc
ctgaaccgaaggaagaagcaagggagatatgtcatgctgtctcattctcttctctcctcc
ctctgggttgatttctcccctgtatgttggggagcagaagaaggaatggggatagagaca
gctgtcactaccctgatgctgctgtggcctccacaattcccggtgttagaaaactctggg
gccatcaccagtgaggtcaagcggacaccgaagaaggcctcagcacagcactgggaactt
agcaaggcgtcagtagtgggcactggcctggggggcaactgcacaggctgtatcatctgc
tcagaggagaacggctgttccacctgccagcagaggctcttcctgttcatccgccgggaa
ggcatccgccagtacggcaagtgcctgcacgactgtccccctgggtacttcggcatccgc
ggccaggaggtcaacaggtgcaaaaaatgtggggccacttgtgagagctgcttcagccag
gacttctgcatccggtgcaagaggcagttttacttgtacaaggggaagtgtctgcccacc
tgcccgccgggcactttggcccaccagaacacacgggagtgccagggggagtgtgaactg
ggtccctggggcggctggagcccctgcacacacaatggaaagacctgcggctcggcttgg
ggcctggagagccgggtacgagaggctggccgggctgggcatgaggaggcagccacctgc
caggtgctttctgagtcaaggaaatgtcccatccagaggccctgcccaggagaccactac
acgtatttccaaaatgtttctgggggctatgaaggaccactgatttacatagaagagagg
ccacagggtgtgcttgagaggagccccggccagaagaagggcaggaaggaccggcgccca
cgcaaggacaggaagctggaccgcaggctggactccccagaggccatttccacagccttc
agccaccagccaccccgaggagctggctggacaaggctccagggcttccagaggcctggc
ttggacacctcccccagctggccgtggagggtcacaacctggcctctgggtgggcagcca
gccctggagggcatcctctgcaagctgcctgccaccctcatcggcactcccccacaggcc
tccctctcatgggttccatgcccctttttcccaagccggatcagcctctcccacattctc
tggaggattgaggggcctctctgggaaggagactctgctgtcaggtgggcatcgcccact
cccttcttacaagccaagcttggagaagttcacagagaagctcagaaacaggccctgcat
gtcattcccacatgctgccaccggatgacggcagtcaaccaggaacaggtcgcagccagg
cttgtcaaggagcgcatttctgaaacggggtcgtgttgcggttctctcctagcaggactg
gagcagggtggagggcttgatgtgatggtgatcatgggctgctctctggcagtcaaggcg
ggaggactgaaggacaatctggttccaacaccacagtgtggctgccgttggctcttcagg
cctcctcacctcccaccctctgcctttgctggtgcccacatggaatgtcctcccgggctg
accgtcctgcagacttttacaggtgccccccaagcggtgcatgtgggtaacgttcgtaag
cccaagaggcaccatgcaccaaataccaaagaggttttttccttactcaccaaaagccca
acatgggtgcccctggagcaggaagttctgttcttccaggaaaatagattccagcatgta
acactgggcaagtggcctccctctctgagtatcagtttcctcatgagtgaaatgcaaggt
tttcttgagcgtcactgtaccccacccttagtcccttccgatcctgtgaggttgacctgc
tccaaggctccaggcctggacacaggatccagcctgaccatccacagtagctccttcctc
tggctataa