GENSCAN 1.0	Date run:  7-Nov-116	Time: 14:29:58

Sequence gi568815586r:31182715_31398204 : 215490 bp : 42.90% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.07 PlyA -    163    158    6                               1.05
 1.06 Term -   2986   2933   54  1  0   98   44    48 0.322  -2.02
 1.05 Intr -   5972   5855  118  1  1   72  110    40 0.367   4.15
 1.04 Intr -  11382  11298   85  1  1   70   89    91 0.660   5.36
 1.03 Intr -  17865  17709  157  0  1   79  113   124 0.951  12.66
 1.02 Intr -  18521  18338  184  1  1   61   84   153 0.919  11.07
 1.01 Init -  24809  24760   50  2  2   95   32    61 0.029   1.67
 1.00 Prom -  29003  28964   40                              -5.25

 2.00 Prom +  32027  32066   40                              -3.75
 2.01 Init +  34841  35201  361  1  1   61    5   257 0.388  11.99
 2.02 Intr +  37808  37907  100  0  1   53   64   100 0.291   2.35
 2.03 Intr +  39993  40101  109  0  1   88   75    57 0.221   3.77
 2.04 Intr +  42077  42284  208  1  1   64   55   164 0.523   8.43
 2.05 Intr +  44619  45068  450  1  0   63   76   244 0.656  13.05
 2.06 Intr +  47019  47128  110  1  2   77   25    92 0.162   0.88
 2.07 Intr +  50516  50909  394  1  1   55   60   185 0.258   5.70
 2.08 Term +  53494  53906  413  2  2   47   38   243 0.124   9.62
 2.09 PlyA +  55272  55277    6                               1.05

 3.14 PlyA -  56142  56137    6                               1.05
 3.13 Term -  69808  69275  534  1  0   58   52   655 0.886  52.16
 3.12 Intr -  69918  69817  102  0  0   -5   42   185 0.893   4.05
 3.11 Intr -  71162  70981  182  0  2   23   33   117 0.784  -1.63
 3.10 Intr -  71643  71564   80  2  2   46   44    99 0.181  -0.42
 3.09 Intr -  97071  96850  222  2  0   61   64   164 0.029   7.62
 3.08 Intr - 100157 100002  156  1  0   98    7   153 0.045   6.40
 3.07 Intr - 105070 104920  151  2  1   81   93    22 0.567   0.30
 3.06 Intr - 111217 111091  127  1  1   79   92    57 0.748   4.53
 3.05 Intr - 112619 112520  100  1  1   72   27    64 0.680  -2.11
 3.04 Intr - 115548 115363  186  2  0   33   86   110 0.387   3.18
 3.03 Intr - 118419 118283  137  0  2   62   77   131 0.907   7.85
 3.02 Intr - 122754 122485  270  0  0   83   74    91 0.812   4.02
 3.01 Init - 125962 125819  144  1  0   46   59   101 0.854   3.17
 3.00 Prom - 127597 127558   40                              -7.45

 4.08 PlyA - 128030 128025    6                               1.05
 4.07 Term - 128769 128614  156  0  0   57   43   199 0.478   9.25
 4.06 Intr - 138450 138361   90  0  0   98   97     8 0.033   1.97
 4.05 Intr - 141308 141170  139  1  1    5   76    88 0.006  -1.15
 4.04 Intr - 142495 142278  218  1  2   38   51   171 0.278   4.78
 4.03 Intr - 142700 142512  189  2  0    6   90   269 0.871  17.76
 4.02 Intr - 142962 142880   83  1  2   81   82    91 0.769   6.24
 4.01 Init - 154783 154774   10  1  1  114   97     7 0.676   5.05
 4.00 Prom - 157537 157498   40                              -9.65

 5.00 Prom + 158268 158307   40                              -4.25
 5.01 Init + 159709 159782   74  0  2   84   69    45 0.475   2.79
 5.02 Intr + 164228 164402  175  2  1   24   81   113 0.579   3.22
 5.03 Term + 169244 169351  108  1  0   80   49    67 0.224  -0.47
 5.04 PlyA + 170122 170127    6                               1.05

 6.00 Prom + 173214 173253   40                              -5.35
 6.01 Init + 178019 178186  168  1  0   54  110   103 0.813   8.68
 6.02 Intr + 181013 181068   56  1  2  113   52    36 0.016  -0.64
 6.03 Term + 187369 187543  175  1  1   56   41   155 0.645   3.85
 6.04 PlyA + 188177 188182    6                               1.05

 7.05 PlyA - 190823 190818    6                               1.05
 7.04 Term - 205072 204889  184  0  1   58   40   212 0.780   9.43
 7.03 Intr - 206784 206610  175  1  1   82   82    94 0.744   6.28
 7.02 Intr - 209679 209553  127  0  1   60   67    55 0.597  -0.07
 7.01 Intr - 209982 209900   83  1  2   78   53    77 0.507   1.64

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  55095  55210  116  1  2   90   47   153 0.855   9.15
S.002 Term - 100157  99998  160  1  1   98   42   143 0.937   7.13


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_1|215_aa
MAHEDTAPGDPENMRSRQYVLLIPSVLQEGSLDKACAQLFNLTESVVLTVSLNYGEVQTK
IFEENVTGENFFKCISFEVPQARSDPLAFITFSAKGATLNLEERRSVAIRSRENVVFVQT
DKPTYKPGQKVLPKFQMTVDAPENILVVDSEFKVNVCALYTYGEPVDGKVQLSVCRESTA
YHSCAHLISSLCKNFTIQLGKDGCVSKFINTDAFE

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_1|648_bp
atggcccatgaagacacagccccaggagatcctgagaacatgcgctcaaggcagtatgtt
ctgctgattccttctgttctacaagaaggctctttggataaagcttgtgcccagcttttt
aatctcactgaatctgttgttttgacggtctccctcaactatggtgaggtccagaccaaa
atatttgaagaaaatgttactggagaaaatttcttcaaatgcatcagctttgaggttcct
caggccagatctgacccactggcatttattacattttctgctaaaggagccactctcaac
ctggaagagaggagatctgtggcaatcagatccagagagaatgtggtctttgtacagact
gataaacccacctacaagcctggacagaaagtgttacccaaatttcaaatgactgtggat
gcaccagaaaatatcttagttgtggactctgaattcaaagtgaatgtctgtgccttatat
acctatggtgaacctgtggacgggaaggtccaacttagtgtgtgcagagaatctacggct
tatcattcatgtgctcatcttatcagttcactctgtaaaaattttaccattcagttgggg
aaagatggctgtgtctccaagtttattaacacagatgcttttgagtga

>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_2|714_aa
MVTSASLNYLSLNYLEGEKELVMSGAPVLADTARSSALAIIACKTGSSEGLQALRKPRTP
TSGQGKVGKISGRRRSRADHGEGSSRLRRQTLCKRTPRRTKQQSNSKQRLWLELCLSRSR
TPKDTVLATSLVSLRVQHNGEHTVGDGCGDLELREDSWVFQDQESPKGLLPEGVLLGLER
GLPRTTPSDQTHPSSVKISHSEPSTLPPPPSDPMVHSHQGGCHSAGISSPGQLIAGKATA
PSSLCCQIPGPVDSMCHTADCWGQKQHHVSTLHLGVHCLGQGAPRQALLLTLTPSSSDGQ
AVRTASPQVPGTRELTTDSQGQLVSPWFPAREPVSTVEPQDSTIRAGFSKAVPLSSVTSR
PFAAHCWHLAWALRLPNSSLQRKQETNGAFAALLSQTHARPAHGKGAREAPLGTLVSLGP
LPTVRAYRGLEPTPTTLTTAGLRALMLLAYRLLLHPPCHDPVRSSDNPPRRPSPREQTRN
QDSWVSAPATPLSAPMQLTPTQFTSHESPAEPPKRCSEVTAAATSTRQTKESPHPSEPVC
WDPPQAAEQGHGPGCLAGHHGGLGKWEYRCHDDHINEEQAVSFSIITCPPPPTEPGEEST
ACYQKSPTARTRMIRLQRLGSTVPGLLISSLPHPHFFQSPESPNQSLSKFHRICQIQIQS
TAGRVLFASHLIYCRKQPEGSKEEDSWYERALKPTSCAAQRKLPNLSELQLLQL

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_2|2145_bp
atggtcacttctgcgtcactgaattacctctcactgaattacctcgaaggtgaaaaggag
ctggtgatgtctggtgctcctgtcctggctgacacagctaggtcctcagcattggctatt
attgcctgcaagacggggagtagtgaggggcttcaggcactcaggaaacccagaactccc
acaagtgggcagggcaaagtaggcaaaatttcagggaggaggcggtctagagcagatcac
ggagagggaagctccaggcttaggagacagacactctgcaagagaacaccgcggaggacg
aaacagcagagcaacagcaagcagcgcctctggctggagctgtgcctttcaaggagccgc
actcctaaggacaccgtgttggccacatctttggtgtctctcagggtccagcacaatggg
gagcacacggtgggagatggatgtggtgacctggaactcagggaagacagctgggtcttc
caggaccaggaatccccaaaggggctgctcccagagggtgtattgctgggactggagaga
ggactgcccagaaccaccccctctgatcagacacatccatcatctgtcaagatcagccac
tcagagccctcaaccttgccccctcctccttcagaccccatggtacactcacaccaagga
gggtgtcacagtgcagggatttcatccccagggcagctcattgctgggaaggccacagca
cccagctccctctgctgccagattccaggccctgtggacagcatgtgtcacacagcagac
tgctggggtcaaaaacagcatcacgtaagcaccctccaccttggagtgcactgtttgggg
caaggtgcccccagacaggccctgttgctaacacttacacccagcagttccgatggacaa
gctgtaaggacagcctcgccccaggtgccaggcaccagagaacttacaactgacagccaa
ggccagctggtaagcccttggttcccagcgagagagcctgtgagcacagtggagcctcag
gacagcacgatcagagctggcttctcaaaggcggtgcccttgagctcagtcacctctcgc
ccctttgccgcccattgctggcacctggcttgggctctccgtctgcccaacagctcactt
cagaggaaacaggaaaccaacggggccttcgctgccctcctcagccaaacccatgcaagg
ccagcccatggaaagggagccagggaggccccactgggcacactggtaagtctggggcct
ctgcccacagtcagggcctatcgtggcctggagcccacacctaccacactgactacagca
ggactgagggcactcatgctccttgcttatcgccttcttcttcaccctccttgtcacgac
cctgtcagaagctctgataaccctccaagaagaccaagtccaagagagcagaccaggaac
caggactcctgggtttcagccccagcaacgccactgtctgcacctatgcaactaacccct
acccagttcacatcacatgaaagcccagcagagcccccaaagagatgttcagaagtcact
gctgctgctacttctacaaggcaaacaaaggagagcccccatccctcagaacctgtttgc
tgggatccacctcaggcagcagaacagggacatggaccaggctgcctggcagggcaccac
ggagggctggggaaatgggaatatagatgccatgatgatcatattaatgaggaacaagct
gtgtccttcagcatcattacctgccctccccctccgactgaacctggagaagagtcaaca
gcctgctaccaaaaatcccccacagcccggactcggatgattcgcctacaaaggctgggg
agcacagtcccaggcttactaatctcctctctaccccatccccattttttccagtcccca
gaaagtcccaatcaatctctcagcaaattccacaggatctgtcagattcagatccagtca
actgcaggccgagtgctcttcgcatctcatcttatctactgcaggaagcaacctgagggc
agcaaagaggaagacagctggtatgaacgggctctgaaacctaccagctgtgcggcccag
agaaagctacctaacctctctgagcttcagctgcttcagctgtaa

>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_3|796_aa
MNLADSDFSQGILIPHPVYAYLLLCSDTLSSSEEENLYLLQQLTITLRLSSHEIVTGRPR
HMGIKMTDTNLLNGDILHCCKGLVHQLMKSQTLVQDTSHSALLGDEDSGHDLQPGNFVCW
KRHLIKDSLQPWWRGPYQLSSVVTGTNYGVLVKSNLSEGSSHPRDELNADSFEDLFIWGK
GKRCPQQRYVNSLGFTDYCPEEKMFGFHKPKMYRSIEGCCICRAKSSSSRFTDSKRYEKD
FQSCFGLHETRSGDICNACVLLVKRWKKLPAGSKKNWNHVVDARAGPSLKTTLKPKKVKT
LSGNRIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQSDDGSDTEMASGSNRTP
VFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPIS
TQEWTECPDLSLVVSWRPPLSSLPAGCSLHGLAADWTTDMITVTTSKCREPSCQQEGSFQ
VLPISKGRGSYEGLDTKREAQWQNGNSSMRTRQSTKVEQLHVEEKPVEPQRVSRHHFEYQ
LGLFGSIDVSDDRNDKQYCPEGSFKEDDPQTELPAAAFKELCSCVRRKAFPKRLAKTAEV
QVLVLDGRGHLLGRLAAIVVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNSY
RGSYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPVALKVV
RLKPTRKFAYLGRLAHEFGWKYQAGTATLEEKRKEKAKIHYGKKKQLMRLRKQAEKNVEK
KIDKYTEVLKTHGLLI

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_3|2391_bp
atgaatttagcagactcggacttctctcaggggatcctcatccctcatccagtgtatgca
tacctcctcctttgctctgacacactttcttcctctgaagaagaaaacttgtacttactt
caacaattgaccattacattaaggctctcttctcatgaaattgtaactggaagacccagg
cacatgggaatcaagatgactgatacaaatttactgaatggggacatcttgcactgttgt
aagggacttgttcaccagctcatgaaaagccagaccttagtgcaagacacgtcccacagt
gcgctcctgggagatgaagattctggtcatgacctccaacctggaaattttgtctgttgg
aaaagacatctcataaaggactccctccagccttggtggaggggcccttaccagcttagc
agtgtggtaactggcacaaactatggcgtcttggtcaaatccaacctcagtgaaggtagt
tcacatcctagagatgagctgaatgctgatagctttgaggacttgtttatttgggggaag
ggaaagagatgccctcaacaaagatatgtcaattcccttggctttacagactattgccca
gaagaaaagatgtttggttttcacaagccaaagatgtaccgaagtatagagggctgctgt
atttgcagagctaagtcctccagttctcgattcactgacagtaaacgctatgaaaaggac
ttccagagctgttttggattgcatgagactcgttcaggagacatctgcaatgcctgtgtc
ctgcttgtgaaaagatggaagaagttgccagcaggatcaaaaaaaaactggaatcatgtg
gtagatgcaagggctggacccagtctaaagactacattgaaaccaaagaaagtgaaaact
ctatctgggaacaggataaaaagcaaccagatcagtaaactgcagaaggaatttaaacgt
cataattctgatgctcacagtaccacctcaagtgcctccccagctcaatctccttgttac
agtaaccagtcagatgacggctcagatacagagatggcttctggttctaacagaacacca
gttttttcctttttagatctcacttactggaaaagacagaagatatgttgtgggatcatc
tataaaggccgttttggggaagtcctcattgacacacatctcttcaagccttgctgcagc
aataagaaagcagctgctgagaagccagaggagcaggggccagagcctctgcccatctcc
actcaggagtggactgagtgtccagacctctcactggttgtcagctggaggcccccgctt
agttccttgccagctgggtgctccctgcatggcctggctgctgactggaccactgacatg
attactgtcactaccagcaagtgtcgagagccaagctgccagcaagaggggtcttttcag
gtcctgcccatatccaaggggagaggctcatacgaaggattggataccaagagagaggct
cagtggcagaatgggaattcttccatgaggactcgacagtcaaccaaagttgaacaatta
catgtagaagagaagcctgtagaacctcagagggtgtcaaggcatcactttgagtatcag
ttaggattatttggaagtatagatgtatcagatgatagaaatgacaagcagtactgccca
gaagggagtttcaaagaggatgacccccaaacggaacttcctgcagctgcatttaaagaa
ttgtgttcatgtgtgagaagaaaagcctttcccaagcggctggcgaagacggcagaggtg
caggtcctggtgcttgatggtcgaggccatctcctgggccgcctggcggccatcgtggta
ctgctgggccggaaggtggtggtcgtacgctgcgaaggcatcaacatttctggcaatttc
tacagaaacaagttgaagtacctcgctttcctccgcaagcggatgaacaccaactcttac
cgaggctcctaccacttccgggcccccagccgcatcttctggcggaccgtgcgaggtatg
ctgccccacaagaccaagcgaggccaggccgctctggaccgcctcaaggtgtttgatggc
atcccaccgccctacgacaagaaaaagcggatggtggttcctgttgccctcaaggttgtg
cgtctgaagcctacaagaaagtttgcctatctggggcgcctggctcacgagtttggctgg
aagtaccaggcagggacagccaccctggaggagaagaggaaagagaaagccaagatccac
tacgggaagaagaaacagctcatgaggctacggaaacaggccgagaagaacgtggagaag
aaaattgacaaatacacagaggtcctcaagacccacggcctcctgatctga

>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_4|294_aa
MPGLFSRGKEPGGRKAREESDSLATAQRPGSCWALPERTRRGVVCSTPEGCGCDNESNTR
SLKNSPSSTRLPSSDRAQEPLVSGVLSEPEVLLPRRCGRHREGFPFMGGRPRCKMAREAN
LAGDGGGGVVYAAGVSELRRALLFVLYVTDHVLRAATLVLVRMSSPAEHSYLLARRLSRQ
SPECPRGKHDLRKVGTRGPWEERGGILLLSEKRFFIESATRIFLYYGNNLEMSSSPKREF
VFKSKAKLWAIVKEFPDPYEDRICFTKEFELTIKIYDPGHSDIYRLVYMLVSAA

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_4|885_bp
atgcccggcctgttctctcgcggaaaggagcccggcggccgaaaggcccgagaggaaagc
gactcgttggccaccgcgcagcggccggggtcgtgctgggctctgccggagcgcacgcgg
cgtggcgttgtttgctcaactccggagggatgcggatgcgacaatgagagcaacacgcgg
tcgcttaaaaacagcccgtcttccactcgcctgccctcttcggaccgcgcccaagagcct
ctggtgtccggggtgctttcggagcccgaagttttgctcccgcgtaggtgtgggcgacac
cgcgagggcttcccgtttatgggcggccgtccgcgctgtaagatggccagggaagccaac
ttggctggagatggaggcggcggcgttgtgtacgccgcgggagtcagtgaactccgcagg
gcactgctttttgtgctctacgtgacagaccacgtgcttcgggctgcgaccctggtcctt
gtccgaatgtccagccccgcggagcattcttacttgctggctcggcgtctctctcggcag
tcaccggagtgcccgagggggaagcacgatttacggaaggtggggacccgagggccctgg
gaggagcggggaggcattttactgctttcagagaaacggttttttattgaatctgcaact
aggatttttctgtattatggaaataatctggaaatgtcatctagtccaaaaagggagttt
gttttcaagtcgaaggccaaattatgggccatagttaaggaatttcctgacccttatgaa
gatcggatttgctttaccaaagaatttgaactcacaattaaaatctatgacccaggtcat
tctgacatttatcggcttgtctacatgctggtttcagctgcttaa

>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_5|118_aa
MQIYYSVKCMIGFLEDESGQVMQGLPLSIAPGAPSLRDAHSSLALQIQIGGTSSSPKILP
LDSSYLKGSLTHFPTCSCRPTAKVCPRTVFVPKTQFKLVDHKEDLVNSHNPGCARAKP

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_5|357_bp
atgcagatttattacagtgtcaagtgcatgattggatttttggaggatgagtctggccag
gtcatgcagggcctaccactctccatagcccctggggcaccaagcctcagggacgcccac
agctccctggctctccagatccagattggtggcacttcatcctctcccaaaatacttccc
ttggattcttcatacctcaaggggtctctaacccactttcctacatgcagctgcagacct
acagctaaggtttgtcctaggaccgtttttgttccaaaaactcaattcaagctagttgac
cacaaagaagacctggttaattctcataaccctggatgcgccagggccaaaccttaa

>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_6|132_aa
MWALPFHRGEAKAKAQRPEHKHEKHLTTWESGAGSGTSIPLAFEQLFSTALTQHGRVLLT
GHFVTWQLTFWGPSNKSYVWEVTRSPRKERRHGNLRIGFSFQEVALLWANHVTSGTVSNQ
NKERAGPIFQIL

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_6|399_bp
atgtgggcacttcccttccatcgtggtgaggccaaagcaaaggcacagagacctgaacac
aaacatgaaaaacaccttaccacctgggagtcaggggcaggttcaggcacatccattcct
ctggcatttgagcagctgttttccacagcattaactcagcacggcagggtccttctcaca
gggcacttcgtgacatggcagctgactttctggggaccatccaataaatcctatgtctgg
gaggtaacccgatcaccgcggaaagaacgccgacatggaaatcttaggattggtttctcg
ttccaggaagttgcgctactttgggcaaatcacgtcacctctgggactgtttctaatcag
aataaagaaagggctggaccaatctttcagatcctttga

>gi568815586r:31182715_31398204|GENSCAN_predicted_peptide_7|189_aa
XPNAGQIQEGIGEAVNNIVKHFHKPEKERGSLTVLLCGENGLVAALEQVFHHGFKSARIF
HKNVFIWDFIEKVVAYFETTDQILDNEDDVLIQKSSCKTFCHYVNAINTAPRNIGKDGKF
QILVCLGTRDRLLPQWIPLLAECPAITRMYEESALLRDRMTVNSLIRILQTIQDFTIVLE
GSLIKGVDV

>gi568815586r:31182715_31398204|GENSCAN_predicted_CDS_7|570_bp
naacccaatgctgggcagatacaagaaggaattggagaagctgtgaacaatattgtgaaa
cattttcataaacctgaaaaagagagaggaagcctcaccgtgttgctgtgtggagaaaat
ggcctggttgcagcccttgagcaagttttccaccatgggttcaaatctgcccgcatcttt
cacaagaatgtcttcatctgggacttcatagagaaagtggttgcttattttgaaacaact
gaccagattctagataatgaagatgatgtccttattcagaaatcatcctgcaaaaccttc
tgccactacgtaaatgctattaatactgcacccaggaacattgggaaggatggcaaattc
cagattttagtttgccttggaacaagggatcgcctgctcccacagtggattccattgtta
gctgagtgtcctgccatcactcgaatgtatgaagagagcgctctcctgcgagaccgcatg
actgtcaactcccttatccgaattctgcagaccattcaggacttcaccatagtcctagaa
ggatcactcatcaaaggagtggatgtgtaa