Result of FASTA (ccds) for pF1KB6271
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6271, 670 aa
  1>>>pF1KB6271 670 - 670 aa - 670 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4763+/-0.00082; mu= 15.4116+/- 0.050
 mean_var=129.2660+/-24.653, 0's: 0 Z-trim(111.2): 76  B-trim: 0 in 0/51
 Lambda= 0.112806
 statistics sampled from 12135 (12210) to 12135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.375), width:  16
 Scan time:  4.390

The best scores are:                                      opt bits E(32554)
CCDS47927.1 RHPN1 gene_id:114822|Hs108|chr8        ( 670) 4513 746.1 3.6e-215
CCDS12427.1 RHPN2 gene_id:85415|Hs108|chr19        ( 686) 1649 280.0 7.5e-75
CCDS2754.1 PTPN23 gene_id:25930|Hs108|chr3         (1636)  453 85.7 5.6e-16


>>CCDS47927.1 RHPN1 gene_id:114822|Hs108|chr8             (670 aa)
 initn: 4513 init1: 4513 opt: 4513  Z-score: 3976.4  bits: 746.1 E(32554): 3.6e-215
Smith-Waterman score: 4513; 100.0% identity (100.0% similar) in 670 aa overlap (1-670:1-670)

               10        20        30        40        50        60
pF1KB6 MILEERPDGAGAGEESPRLQGCDSLTQIQCGQLQSRRAQIHQQIDKELQMRTGAENLYRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MILEERPDGAGAGEESPRLQGCDSLTQIQCGQLQSRRAQIHQQIDKELQMRTGAENLYRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 TSNNRVRETVALELSYVNSNLQLLKEELEELSGGVDPGRHGSEAVTVPMIPLGLKETKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSNNRVRETVALELSYVNSNLQLLKEELEELSGGVDPGRHGSEAVTVPMIPLGLKETKEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 DWSTPLKELISVHFGEDGASYEAEIRELEALRQAMRTPSRNESGLELLTAYYNQLCFLDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DWSTPLKELISVHFGEDGASYEAEIRELEALRQAMRTPSRNESGLELLTAYYNQLCFLDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RFLTPARSLGLFFHWYDSLTGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RFLTPARSLGLFFHWYDSLTGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGAR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RAMEAFQRAAGAFSLLRENFSHAPSPDMSAASLCALEQLMMAQAQECVFEGLSPPASMAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RAMEAFQRAAGAFSLLRENFSHAPSPDMSAASLCALEQLMMAQAQECVFEGLSPPASMAP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 QDCLAQLRLAQEAAQVAAEYRLVHRTMAQPPVHDYVPVSWTALVHVKAEYFRSLAHYHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDCLAQLRLAQEAAQVAAEYRLVHRTMAQPPVHDYVPVSWTALVHVKAEYFRSLAHYHVA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 MALCDGSPATEGELPTHEQVFLQPPTSSKPRGPVLPQELEERRQLGKAHLKRAILGQEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MALCDGSPATEGELPTHEQVFLQPPTSSKPRGPVLPQELEERRQLGKAHLKRAILGQEEA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 LRLHALCRVLREVDLLRAVISQTLQRSLAKYAELDREDDFCEAAEAPDIQPKTHQKPEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LRLHALCRVLREVDLLRAVISQTLQRSLAKYAELDREDDFCEAAEAPDIQPKTHQKPEAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 MPRLSQGKGPDIFHRLGPLSVFSAKNRWRLVGPVHLTRGEGGFGLTLRGDSPVLIAAVIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPRLSQGKGPDIFHRLGPLSVFSAKNRWRLVGPVHLTRGEGGFGLTLRGDSPVLIAAVIP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 GSQAAAAGLKEGDYIVSVNGQPCRWWRHAEVVTELKAAGEAGASLQVVSLLPSSRLPSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GSQAAAAGLKEGDYIVSVNGQPCRWWRHAEVVTELKAAGEAGASLQVVSLLPSSRLPSLG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 DRRPVLLGPRGLLRSQREHGCKTPASTWASPRPLLNWSRKAQQGKTGGCPQPCAPVKPAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DRRPVLLGPRGLLRSQREHGCKTPASTWASPRPLLNWSRKAQQGKTGGCPQPCAPVKPAP
              610       620       630       640       650       660

              670
pF1KB6 PSSLKHPGWP
       ::::::::::
CCDS47 PSSLKHPGWP
              670

>>CCDS12427.1 RHPN2 gene_id:85415|Hs108|chr19             (686 aa)
 initn: 1600 init1: 1405 opt: 1649  Z-score: 1457.3  bits: 280.0 E(32554): 7.5e-75
Smith-Waterman score: 1649; 42.2% identity (71.3% similar) in 658 aa overlap (20-667:23-675)

                  10        20        30        40        50       
pF1KB6    MILEERPDGAGAGEESPRLQGCDSLTQIQCGQLQSRRAQIHQQIDKELQMRTGAENL
                             .::. :.:   ..::..:: ..::: : ..::::::::
CCDS12 MTDALLPAAPQPLEKENDGYFRKGCNPLAQTGRSKLQNQRAALNQQILKAVRMRTGAENL
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 YRATSNNRVRETVALELSYVNSNLQLLKEELEELSGGVDPGRHGSEAVTVPMIPLGLKET
        ....:..::: : ::::.:::.::.:::::: :. .:   ..  :: :.:.::::::::
CCDS12 LKVATNSKVREQVRLELSFVNSDLQMLKEELEGLNISVGVYQNTEEAFTIPLIPLGLKET
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 KELDWSTPLKELISVHFGEDGASYEAEIRELEALRQAMRTPSRNESGLELLTAYYNQLCF
       :..:... ::..:  :..:::  :: :: .:  :::: :::::.:.:.::: .:. :: :
CCDS12 KDVDFAVVLKDFILEHYSEDGYLYEDEIADLMDLRQACRTPSRDEAGVELLMTYFIQLGF
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 LDARFLTPARSLGLFFHWYDSLTGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTE
       ...::. :.:..::.: :::::::::..:. : .::.::::: :::.::::.: ::.   
CCDS12 VESRFFPPTRQMGLLFTWYDSLTGVPVSQQNLLLEKASVLFNTGALYTQIGTRCDRQTQA
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB6 GARRAMEAFQRAAGAFSLLRENFSHAPSPDMSAASLCALEQLMMAQAQECVFEGLSPPAS
       : . :..:::::::... :...:.:.:: ::: : : .: ..:.::::: ::: .: :. 
CCDS12 GLESAIDAFQRAAGVLNYLKDTFTHTPSYDMSPAMLSVLVKMMLAQAQESVFEKISLPG-
              250       260       270       280       290          

       300       310       320       330       340       350       
pF1KB6 MAPQDCLAQLRLAQEAAQVAAEYRLVHRTMAQPPVHDYVPVSWTALVHVKAEYFRSLAHY
          .. .  ...:::::.:.  :. .: .:.: ::.. .: ::..:. :::... .::::
CCDS12 -IRNEFFMLVKVAQEAAKVGEVYQQLHAAMSQAPVKENIPYSWASLACVKAHHYAALAHY
      300       310       320       330       340       350        

       360         370       380       390          400       410  
pF1KB6 HVAMALCDGS--PATEGELPTHEQVFLQPPTSSKPRG--PVLP-QELEERRQLGKAHLKR
        .:. : : .  :.:. .   :..  :.   .  :.:  :.   .. ..::::::.::.:
CCDS12 FTAILLIDHQVKPGTDLD---HQEKCLSQLYDHMPEGLTPLATLKNDQQRRQLGKSHLRR
      360       370          380       390       400       410     

            420       430       440       450       460       470  
pF1KB6 AILGQEEALRLHALCRVLREVDLLRAVISQTLQRSLAKYAELDREDDFCEAAEAPDIQPK
       :.  .::..:  .::. :: ...:. :.  . .::   ::. ..:::. .  .::..  :
CCDS12 AMAHHEESVREASLCKKLRSIEVLQKVLCAAQERSRLTYAQHQEEDDLLNLIDAPSVVAK
         420       430       440       450       460       470     

            480       490       500       510       520       530  
pF1KB6 THQKPEARMPRLSQGKGPDIFHRLGPLSVFSAKNRWRLVGPVHLTRGEGGFGLTLRGDSP
       :.:. .  .:..:.    :.:..:::::::::..::     ...:  :: .:.::::..:
CCDS12 TEQEVDIILPQFSKLTVTDFFQKLGPLSVFSANKRWTPPRSIRFTAEEGDLGFTLRGNAP
         480       490       500       510       520       530     

            540       550       560       570       580       590  
pF1KB6 VLIAAVIPGSQAAAAGLKEGDYIVSVNGQPCRWWRHAEVVTELKAAGEAGASLQVVSLLP
       : .  . :  .:..:: .:::::::..   :.:   .::.  ::. ::    ..::::: 
CCDS12 VQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLD
         540       550       560       570       580       590     

             600        610       620       630          640       
pF1KB6 S-SRLPSLGDRRPV-LLGPRGLLRSQREHGCKTPASTWASPR-PLLNW--SRKAQQGKTG
       : : . . .    : .    ...    .   ::  .   : .  .:.:  ... :.. . 
CCDS12 STSSMHNKSATYSVGMQKTYSMICLAIDDDDKTDKTKKISKKLSFLSWGTNKNRQKSAST
         600       610       620       630       640       650     

       650       660       670        
pF1KB6 GCPQPCAPVKPAPPSSLKHPGWP        
        :    . ..:   ..:  :           
CCDS12 LCLPSVGAARPQVKKKLPSPFSLLNSDSSWY
         660       670       680      

>>CCDS2754.1 PTPN23 gene_id:25930|Hs108|chr3              (1636 aa)
 initn: 448 init1: 231 opt: 453  Z-score: 400.4  bits: 85.7 E(32554): 5.6e-16
Smith-Waterman score: 474; 29.6% identity (55.3% similar) in 416 aa overlap (103-506:2-370)

             80        90       100        110       120       130 
pF1KB6 ELSYVNSNLQLLKEELEELSGGVDPGRHGSEAVT-VPMIPLGLKETKELDWSTPLKELIS
                                     :::  .::: : :::. .. ..  .:... 
CCDS27                              MEAVPRMPMIWLDLKEAGDFHFQPAVKKFVL
                                            10        20        30 

             140       150        160       170       180          
pF1KB6 VHFGEDGASYEAEIRELEALRQ-AMRTPSRNESGLELLTAYYNQLCFLDARF-LTPARSL
        ..::.  .:. :...:: ::: :.:.: :.  :  .:  : .:: .:..:  .  ..  
CCDS27 KNYGENPEAYNEELKKLELLRQNAVRVP-RDFEGCSVLRKYLGQLHYLQSRVPMGSGQEA
              40        50         60        70        80        90

     190       200       210       220       230       240         
pF1KB6 GLFFHWYDSLTGVPAQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGARRAMEAFQRA
       ..   : . ..:  . .. . .:.. .:.:.::::...:: . :   :: . .   :: :
CCDS27 AVPVTWTEIFSGKSVAHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCA
              100       110       120       130       140       150

     250       260       270       280       290       300         
pF1KB6 AGAFSLLRENFSHAPSPDMSAASLCALEQLMMAQAQECVFEGLSPPASMAPQDCLAQLRL
       ::::. :::.: .: : :::   :    .::..:::::..:      ::   :   .. .
CCDS27 AGAFAYLREHFPQAYSVDMSRQILTLNVNLMLGQAQECLLE-----KSML--DNRKSFLV
              160       170       180       190              200   

     310       320       330          340       350       360      
pF1KB6 AQEAAQVAAEYRLVHRTMAQPPVHDY---VPVSWTALVHVKAEYFRSLAHYHVAMALCDG
       :. .:::.  :. . :.. .: . .    .  .:  ::..:  :: ..:: :.      :
CCDS27 ARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHM------G
           210       220       230       240       250             

        370       380       390       400       410       420      
pF1KB6 SPATEGELPTHEQVFLQPPTSSKPRGPVLPQELEERRQLGKAHLKRAILGQEEALRLHAL
       . : :                         :.. ::     :... :.   .::..:   
CCDS27 KQAEE------------------------QQKFGERV----AYFQSALDKLNEAIKLAK-
       260                               270           280         

        430       440       450       460          470          480
pF1KB6 CRVLREVDLLRAVISQTLQRSLAKYAELDREDDFC--EAAEAPD-IQPKTHQ---KPEAR
            . : .. ..  :..   .::    ...::   ::. : : .::       ::   
CCDS27 ----GQPDTVQDALRFTMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPV
          290       300       310       320       330       340    

              490       500       510       520       530       540
pF1KB6 MPRLSQGKGPDIFHRLGPLSVFSAKNRWRLVGPVHLTRGEGGFGLTLRGDSPVLIAAVIP
        :      ::::: .: :...  :..                                  
CCDS27 NPTDPAVTGPDIFAKLVPMAAHEASSLYSEEKAKLLREMMAKIEDKNEVLDQFMDSMQLD
          350       360       370       380       390       400    




670 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:01:11 2016 done: Sat Nov  5 19:01:12 2016
 Total Scan time:  4.390 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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