Result of FASTA (omim) for pF1KB0471
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0471, 515 aa
  1>>>pF1KB0471 515 - 515 aa - 515 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6513+/-0.000365; mu= 12.0260+/- 0.023
 mean_var=102.8953+/-20.076, 0's: 0 Z-trim(115.9): 20  B-trim: 34 in 1/51
 Lambda= 0.126438
 statistics sampled from 26613 (26633) to 26613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.312), width:  16
 Scan time: 10.110

The best scores are:                                      opt bits E(85289)
NP_997468 (OMIM: 602376,610424,616669) interferon  ( 515) 3437 637.7 2.4e-182
NP_001276054 (OMIM: 602376,610424,616669) interfer ( 515) 3437 637.7 2.4e-182
NP_997467 (OMIM: 602376,610424,616669) interferon  ( 331) 1833 345.0   2e-94
NP_000865 (OMIM: 602376,610424,616669) interferon  ( 331) 1833 345.0   2e-94
NP_001276055 (OMIM: 602376,610424,616669) interfer ( 239) 1572 297.3 3.3e-80
NP_001276057 (OMIM: 602376,610424,616669) interfer ( 239) 1572 297.3 3.3e-80


>>NP_997468 (OMIM: 602376,610424,616669) interferon alph  (515 aa)
 initn: 3437 init1: 3437 opt: 3437  Z-score: 3394.6  bits: 637.7 E(85289): 2.4e-182
Smith-Waterman score: 3437; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
              430       440       450       460       470       480

              490       500       510     
pF1KB0 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
       :::::::::::::::::::::::::::::::::::
NP_997 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
              490       500       510     

>>NP_001276054 (OMIM: 602376,610424,616669) interferon a  (515 aa)
 initn: 3437 init1: 3437 opt: 3437  Z-score: 3394.6  bits: 637.7 E(85289): 2.4e-182
Smith-Waterman score: 3437; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPESEEEPDLPEVDVELPTMPKDSPQQLELLSGPCERRKSPLQDPFPEEDYSSTEGSGGR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITFNVDLNSVFLRVLDDEDSDDLEAPLMLSSHLEEMVDPEDPDNVQSNHLLASGEGTQPT
              430       440       450       460       470       480

              490       500       510     
pF1KB0 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
       :::::::::::::::::::::::::::::::::::
NP_001 FPSPSSEGLWSEDAPSDQSDTSESDVDLGDGYIMR
              490       500       510     

>>NP_997467 (OMIM: 602376,610424,616669) interferon alph  (331 aa)
 initn: 1855 init1: 1833 opt: 1833  Z-score: 1816.2  bits: 345.0 E(85289): 2e-94
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_997 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
       ::::::::::::::::::::::::::::::::::::::::                    
NP_997 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLRQGLAKGWNAVAIHRCSHNA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
                                                                   
NP_997 LQSETPELKQSSCLSFPSSWDYKRASLCPSD                             
              310       320       330                              

>>NP_000865 (OMIM: 602376,610424,616669) interferon alph  (331 aa)
 initn: 1855 init1: 1833 opt: 1833  Z-score: 1816.2  bits: 345.0 E(85289): 2e-94
Smith-Waterman score: 1833; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD
       ::::::::::::::::::::::::::::::::::::::::                    
NP_000 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLRQGLAKGWNAVAIHRCSHNA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 MVEVIYINRKKKVWDYNYDDESDSDTEAAPRTSGGGYTMHGLTVRPLGQASATSTESQLI
                                                                   
NP_000 LQSETPELKQSSCLSFPSSWDYKRASLCPSD                             
              310       320       330                              

>>NP_001276055 (OMIM: 602376,610424,616669) interferon a  (239 aa)
 initn: 1572 init1: 1572 opt: 1572  Z-score: 1561.0  bits: 297.3 E(85289): 3.3e-80
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESEFS 
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD

>>NP_001276057 (OMIM: 602376,610424,616669) interferon a  (239 aa)
 initn: 1572 init1: 1572 opt: 1572  Z-score: 1561.0  bits: 297.3 E(85289): 3.3e-80
Smith-Waterman score: 1572; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)

               10        20        30        40        50        60
pF1KB0 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLLSQNAFIFRSLNLVLMVYISLVFGISYDSPDYTDESCTFKISLRNFRSILSWELKNHS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEGFSGNTTLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFPSIVEEELQFDLSLVIEEQSEGIVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESESAE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
NP_001 HKPEIKGNMSGNFTYIIDKLIPNTNYCVSVYLEHSDEQAVIKSPLKCTLLPPGQESEFS 
              190       200       210       220       230          

              250       260       270       280       290       300
pF1KB0 SAKIGGIITVFLIALVLTSTIVTLKWIGYICLRNSLPKVLNFHNFLAWPFPNLPPLEAMD




515 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:51:12 2016 done: Sat Nov  5 18:51:13 2016
 Total Scan time: 10.110 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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