GENSCAN 1.0	Date run:  5-Nov-116	Time: 18:44:57

Sequence gi568815578f:54375947_54750476 : 374530 bp : 39.36% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8575   8700  126  0  0   77   66    48 0.189   1.46
 1.02 Intr +   8843   8981  139  1  1   42   48   106 0.276   1.12
 1.03 Term +  22489  22601  113  2  2   69   49   196 0.713  11.54
 1.04 PlyA +  22889  22894    6                               1.05

 2.00 Prom +  34009  34048   40                              -4.65
 2.01 Init +  39149  39237   89  1  2   60   69    44 0.022  -0.14
 2.02 Term +  53609  53807  199  2  1   29   33   236 0.097   8.09
 2.03 PlyA +  54047  54052    6                               1.05

 3.00 Prom +  71135  71174   40                              -3.65
 3.01 Init +  73532  73607   76  1  1   67   37    77 0.594   1.80
 3.02 Intr +  78650  78877  228  0  0   56   53   148 0.177   5.02
 3.03 Term +  81210  81355  146  1  2   57   41    91 0.486  -1.61
 3.04 PlyA +  83014  83019    6                               1.05

 4.08 PlyA -  83199  83194    6                               1.05
 4.07 Term -  86723  86348  376  1  1  130   39   144 0.844   6.93
 4.06 Intr -  92283  92219   65  0  2   76   98    30 0.016  -0.60
 4.05 Intr -  94404  94160  245  1  2   90  100    31 0.007   0.79
 4.04 Intr -  99967  99603  365  0  2   34   23   213 0.315   3.30
 4.03 Intr - 100369 100040  330  0  0   22   32   267 0.358   8.32
 4.02 Intr - 100772 100569  204  1  0  100   59   117 0.628   7.39
 4.01 Init - 138305 138013  293  2  2   47   76   147 0.324   6.07
 4.00 Prom - 152873 152834   40                              -3.05

 5.00 Prom + 153573 153612   40                              -6.35
 5.01 Init + 160624 160629    6  0  0   72   88     0 0.403  -0.67
 5.02 Intr + 178987 179094  108  0  0  108  116    47 0.415   9.06
 5.03 Intr + 179306 179489  184  1  1   47   92    31 0.327  -2.16
 5.04 Intr + 181671 181762   92  1  2  127   80    37 0.807   5.59
 5.05 Intr + 186984 187167  184  2  1   34   16   146 0.002   0.44
 5.06 Intr + 195366 195442   77  1  2  129   35    46 0.000   1.72
 5.07 Intr + 212537 212651  115  1  1   89   72   112 0.884   8.80
 5.08 Intr + 212741 212860  120  0  0   77   68   114 0.731   7.85
 5.09 Intr + 215670 215859  190  1  1   81  105    52 0.791   3.92
 5.10 Intr + 234442 234658  217  1  1   81   49   120 0.044   4.98
 5.11 Term + 250024 250134  111  0  0   63   47    88 0.004  -0.22
 5.12 PlyA + 251234 251239    6                               1.05

 6.00 Prom + 253478 253517   40                              -7.25
 6.01 Init + 253820 253957  138  1  0   63   73   126 0.491   8.79
 6.02 Intr + 258080 258162   83  1  2   75   80    50 0.409   0.42
 6.03 Intr + 267454 267748  295  1  1   76   97   290 0.145  24.79
 6.04 Intr + 278336 278438  103  1  1    7  103    66 0.012  -1.17
 6.05 Term + 285189 285313  125  1  2  102   41   118 0.046   6.07
 6.06 PlyA + 285778 285783    6                               1.05

 7.05 PlyA - 285855 285850    6                              -0.45
 7.04 Term - 286105 285886  220  0  1   16   48   221 0.307   6.43
 7.03 Intr - 305368 305257  112  2  1   95  100    13 0.528   1.72
 7.02 Intr - 306044 305882  163  2  1  107   49    82 0.173   4.83
 7.01 Init - 307363 307211  153  1  0   68   55   142 0.187   8.93
 7.00 Prom - 315898 315859   40                              -5.45

 8.03 PlyA - 317666 317661    6                               1.05
 8.02 Term - 327610 327350  261  1  0   23   38   263 0.889   9.34
 8.01 Init - 341368 341336   33  1  0   84  127     4 0.314   3.87
 8.00 Prom - 348820 348781   40                              -3.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  91719  91649   71  0  2   36  100    85 0.810   5.07
S.002 Init - 195922 195844   79  1  1   57   80    82 0.863   5.57


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_1|125_aa
QMPGLTPISQSLSSTNSALTMSTSEDFSPMLKSAQGCSYPAHIFFLMPRAGKYLKQSNKR
HLSFKAEFQKDFARASLQDLQEEEYAWGDKSSGSTKCGYPEKAVTLALALAGGGQLPHMM
RKGTN

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_1|378_bp
cagatgcctggtctgacacccatttctcagtctctcagtagtaccaacagtgccctaacc
atgagcacatctgaagatttttcaccaatgttgaagtcagctcaaggatgttcataccca
gcccatattttctttttaatgccgagagcgggaaagtacttaaaacagtcaaataaacgt
cacttgtccttcaaagctgaatttcaaaaggactttgcacgagcatctctacaagatctc
caggaagaagaatatgcctggggagacaagagctcaggatccaccaagtgtgggtaccca
gaaaaggcggtcacactggcccttgcccttgctggtggagggcagctgccccacatgatg
aggaaagggaccaactga

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_2|95_aa
MLLYRDPNPSDAASRKIVLFLTLEHVLMSKNLKSYLGQEQSGPCILGMAGRKVQECSEPV
ATAPSRSDFQLTSEGKEPSSEEPLPRDRYQKLQQI

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_2|288_bp
atgcttctctatagggaccccaacccatcagatgcagcttccagaaaaatagttctcttt
ctcacattggaacatgttttgatgtcaaaaaacctcaaaagctacctgggtcaagaacag
tcagggccttgcattcttggcatggccggcaggaaggtgcaggagtgttcagagcccgtg
gccactgctccttcccgctcagactttcagctcacctcagagggaaaagagccatcttcg
gaagagccacttcctcgggatcgataccagaaattgcagcaaatttaa

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_3|149_aa
MKIQRNKGNYFEEESGSFGEVCLDQTNLQRVKGKFSLSSYNSVKRKTSAKLNVKEFNGVM
NDSQIGQPPESQQIQRDSSAATCWKKIYRQQQKRKWQTEIGKASSSSPSIVMTTTVSPDH
CLLSGKIAPSRTADSETQEMVAQEFQQNV

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_3|450_bp
atgaagatccaaagaaacaaaggaaactattttgaggaagagagtggaagttttggagaa
gtgtgtttggatcaaacaaaccttcagagggtaaaggggaagttttctcttagctcctac
aatagtgtgaaaagaaaaacttcagccaaattaaatgtaaaggagtttaatggagtaatg
aatgattcgcaaattgggcagcccccagaatcacagcagattcagagagactccagtgca
gccacatgttggaagaagatttacagacaacagcaaaaaaggaagtggcaaacagaaatt
ggaaaggccagtagctcctctccctccatagtaatgacaaccacagtatctcccgaccac
tgtctcctgagtggcaaaattgcccccagtagaaccgctgattcagagacacaggaaatg
gtggcgcaggaattccaacaaaatgtttga

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_4|625_aa
MKEEKNVKLASVKPEDVTSQGRLQKEPCIQSHMSLNWSSDGLGGTNDFVKKSESKTTSDF
PAIPLNCILQCTMSTKSRVQLLNPFRISNLNLKIPDGRTYVGSTCAMPGIRFHVNNPSVD
LQGVFQQQKSTTPASNHGKSRFKYLPKLAPTRGQPAPPLTRHLGQSSNFHGYREIFISSR
WAPGATEAQHAATIRKPSHPRDKDRSITYLDAGLTVTAPETRVSAEKATAQFSGARPGTL
RPPSRDAGSRERQSNRRTATRRGSILTPRRLLRILTARTRSGSGEGGGQGQDKQSVGESW
RGEAASAALGEALEGAHHFLCPPNPDSGRPACSHFRGAQSAARGGEAGAPASADSAAGLP
GGGAAAAEGSSPASSRPRRRRRRRRRRRKEEEERGGRAIEGKKLCTKIQRLLHFSRAGNG
LPSFTKGGCVFIKYHKAPKLKLEWHFSNTLTKNNLSFGPAACCFQWECHRNICSLSSGKH
MRRCTSGLLSDSLESGSIPLRSDQCLGLKPSPVYSYLLPAMINFMCQLDWASRCPDICLN
IILSVSVIALVRFHTADKDIPKTGNKKRFNWTLQFHMAEEASESWQEVKDTSYMAAAREK
WGRGKRAETPDKPIRSHETYSLSQE

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_4|1878_bp
atgaaagaggagaaaaatgtcaagttggcatctgtcaaaccagaagatgtgacatcccag
gggagactccaaaaggagccctgtattcagagccacatgtcccttaactggagcagtgat
ggcttaggaggtaccaacgactttgtcaagaaatcagaatccaaaaccacttcggacttc
ccagctattcccttgaattgcatcctgcagtgcacaatgagtacaaaaagtagggtgcag
ctattgaatcccttcagaataagtaatctgaatctcaaaattccagatgggaggacatat
gtagggagcacttgcgctatgccaggtatcaggttccacgtaaataacccttccgtggac
ctccagggtgtattccagcaacagaaatccaccaccccggcttcgaaccacggaaaatcc
agattcaagtatctacccaagttggccccgaccagaggccagcccgcaccgcctttgaca
cgacacctgggacagagctccaacttccatggctaccgagaaatatttatttcgagtaga
tgggctccaggggctactgaagcccaacacgcggccaccatcagaaagccaagtcatcca
agagataaagatagatccattacatacctagacgctggccttacagtgacagccccggag
acgcgggtttcggctgagaaagccaccgcgcaattctccggcgcgcggccggggactctc
cgtccaccctccagggatgctggctcaagagagagacaatcgaaccggcgaacagcaaca
cggagaggatcgatactcaccccgaggcgtctgctccggatcctcacagcgcgcacccga
agtggctctggggagggtggagggcagggtcaagacaagcagtcggtgggagaaagttgg
agaggtgaagctgcttcggcggcgctgggcgaggctttagaaggcgcacatcactttctc
tgtccccccaaccctgacagtgggcggccggcttgcagccactttcggggagcgcagagc
gcggcgcggggaggcgaggctggagcgccggcgtcagctgactccgcggccggcctgcca
ggaggaggagcggcggcggctgagggatccagccctgcctcctcccggccgagaaggagg
agaagaaggaggaggaggaggaggaaggaggaggaggaaagaggaggaagggctattgag
ggcaagaaattatgtacaaaaatccagaggcttctacacttctctagagcaggtaatggg
ctcccaagcttcaccaaaggaggctgtgttttcatcaagtaccacaaagcaccaaagctg
aagctggaatggcacttctccaatacccttaccaaaaataacttgagctttggccctgct
gcctgctgctttcagtgggagtgtcacagaaacatatgcagcctttcctctggaaagcac
atgaggagatgcacatctggccttctgagtgattctcttgaaagcggctccattccttta
agatcagatcagtgtcttggtctaaagccttccccagtctactcctacttgctccctgca
atgattaattttatgtgtcaacttgactgggcctcaaggtgcccagatatttgcttgaac
atcattttgagtgtgtctgtgattgcattagttcgttttcacactgctgataaagacata
cccaaaactgggaacaaaaaaaggtttaattggactttacagttccacatggctgaagag
gcctcagaatcatggcaggaggtgaaagacacttcttacatggcagcggcaagagaaaaa
tggggaagaggcaaaagagcggaaacccctgataaacccatcagatctcatgagacttat
tcactatcacaagaatag

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_5|467_aa
MEIYQRCWLVFKKASSKGPKRLEKFSDERAAYFRCYHKLFLLFSSLCYGTYHVVVLPTLK
PREDEDWISLCLRHCLMQKDTHSMLGECGERREGKKQKTGALGSSLSLEDAKHLLPFIPA
LPFSWNALPQDLCNVFKLLWDYRIRVDPSPIAGTLIRRDTDPQGESHVKTGRHWSDTIKS
QRCQGLRQPPDRPIPILLMVKGQHVWPSQLDKAQIQEVTELNNVKNVARLPKSTKKHAIG
IYFNDDTSKTFACESDLEADEWCKVLQMECVGTRINDISLGEPDLLATGVEREQSERFNV
YLMPSPNLDVHGECALQITYEYICLWDVQNPRVKLISWPLSALRRYGRDTTWFTFEAGRM
CETGEGLFIFQTRDGEAIYQKVHSAALAIAEQHERLLQSVKNSMVRLEFLPRVPVPITAE
SNWVIFVLENMEGERCCEEGLLSFLEEGAPLWRQTMIYPKLGFQLAV

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_5|1404_bp
atggagatttatcagcgatgctggttagtattcaagaaagcttcaagcaaaggtccaaaa
agactggagaaattttctgatgaacgtgctgcatatttcaggtgttatcataagctgttc
ttgctgttttccagtctctgctatgggacttatcatgttgttgtactccctacactgaag
ccccgagaggatgaggactggatctcattgtgtctcagacactgcctgatgcagaaagac
actcattcaatgcttggggaatgtggggagagaagggaggggaagaagcagaaaacaggt
gccctgggctcctctctttccttggaagatgccaagcacctcctgccctttatacctgct
cttcccttttcctggaatgctctcccccaggatctttgtaatgtattcaagttgctgtgg
gattatcggattagagtggaccccagtcccatagctggtacccttataagaagagacaca
gacccacagggagaaagccatgtgaagacaggcagacactggagtgatacaattaaaagc
caaaggtgtcaaggactgcggcagccaccagaccgtcccattcccatccttctcatggtt
aaaggtcaacatgtgtggccaagccagctggacaaggctcaaatccaggaggttacagaa
ctcaataatgtgaagaacgtagctcgattgccaaaaagcaccaagaaacatgccataggg
atttatttcaatgacgatacctccaagacttttgcttgcgaatcagatcttgaggctgat
gagtggtgcaaagtactccagatggagtgtgtaggaacacggatcaatgacatcagcctt
ggagagcctgacttactggccactggggttgagagagaacagagtgagagattcaatgtg
tatttgatgccatctcctaacttagatgtacatggcgaatgtgccttgcagattacatat
gagtatatctgtctttgggacgtccagaatcccagagtcaaactcatctcttggccgcta
agcgccctgcggcggtatggacgtgatactacgtggttcacttttgaggcagggaggatg
tgtgagactggtgaagggctgtttatctttcagacccgagacggggaggccatctatcag
aaagtccactctgctgccttggccatagccgagcagcacgagcgcttgctacagagtgtg
aaaaactcgatggtacgtttggaatttcttcctcgtgtcccagtgcctatcactgcagaa
agcaattgggtcatttttgtgctggaaaatatggaaggagaacgctgctgcgaggagggt
cttctctcctttttagaggaaggagcaccgttgtggaggcagacaatgatatatccaaag
cttggctttcaactagctgtctga

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_6|247_aa
MTGNGHSGKVIPRQTAIPKGQVLQAQEPLSAKALRQSVLCVCMCKETHERSAPAASQCQR
NQMRNWETRNAFGSQATFGPSVADAQLSSLWLQLQMKMSERAASLSTMVPLPRSAYWQHI
TRQHSTGQLYRLQGKRGATCVQGVGQAWEYWGGGSAQLAAAACQLVSALPPKTPVKSQVV
EPSQCLHSSGLPKTLPLSGDAEFWHTDHAGELPDITMDFVNCHGAGGSVAVRTTTGHSHR
HLGFDES

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_6|744_bp
atgaccgggaatggtcactctggtaaagtgatacccaggcagacagccattcctaagggc
caggtgcttcaggcccaggagcctttaagtgccaaagccctgaggcagtctgtgctttgc
gtgtgcatgtgcaaagagactcatgaaagaagtgcaccagcagcaagtcagtgtcagcga
aaccaaatgaggaactgggaaaccagaaatgcatttggcagtcaggccactttcggcccc
agtgttgctgacgcacaactttcttccctttggctgcagctccagatgaagatgagtgag
cgggccgcctcgctgagcaccatggtgcccctgcctcgcagcgcctactggcagcacatc
acacggcagcacagcacgggacagctctaccgcttgcaaggtaagcgtggggctacctgt
gtccagggtgtgggccaggcctgggagtactggggagggggctcagctcaactcgcagct
gctgcatgccagctggttagtgcccttcctccaaagacacctgtgaaaagtcaggtggta
gagccaagccagtgcctccattcgagtgggctgcccaagacgcttcccttgtcaggagat
gcagaattctggcacacagaccatgcaggggaacttcctgacattaccatggattttgta
aactgtcatggtgctggtgggagtgtagcagtgaggacgaccacaggtcactctcatcgc
caccttggttttgatgagtcttag

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_7|215_aa
MGNIAVQNRQLREPAALANSPFSTACLGSSRCQIITKQASEILRPAGMWYPLLPNLFLHA
EKDDGEKKTYGAQNSPISLSQEKSCRGNRGQAYPASFQKGPDQCLSMLPETILRIIQMFS
LYTVCLATAADINITGLAWHKLKNPVASVLNRGQLLNDWTASFKRRASVLGGSHMKKHKR
DRKSQRTIPSPAQLPSSQGAPSGQGGYGIRRPSVK

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_7|648_bp
atgggtaacatcgcagtccagaacagacagctcagagagccagccgctttggcaaacagc
cctttcagtacagcctgtttgggaagttctagatgccagattattaccaagcaggccagt
gagatcctcagacctgcaggtatgtggtacccactcctgcccaacctcttccttcatgct
gagaaggatgacggtgagaaaaaaacatatggtgcccagaacagtcctatttctctttct
caagagaaaagctgcaggggaaacaggggacaggcttatccagcttccttccagaagggg
ccagaccagtgcctgtcgatgcttccagagacaatccttagaataatacagatgttctcc
ttgtatacagtttgcctagcaaccgcagcagacataaacattacgggcttggcgtggcac
aaactgaagaaccctgtggcttctgtcctcaaccgaggtcaattattaaatgactggact
gcgagttttaaaaggcgagcatcagtcctgggtgggagccacatgaagaagcacaaaaga
gacagaaaaagtcaacgaacaatccccagtcccgctcagttgccttcttctcaaggggca
ccttcaggacagggcggctacggaatcaggagacccagtgtaaaatga

>gi568815578f:54375947_54750476|GENSCAN_predicted_peptide_8|97_aa
MIARLHQPCGTDKKCIKGNERAKGRERKKETEKEGDRDKEKQRQKLEKQVEEAQIQYGTE
KDVGAKLTATGRLKQSLLTRWLTIAEHQKAPSNCQVI

>gi568815578f:54375947_54750476|GENSCAN_predicted_CDS_8|294_bp
atgattgcgaggcttcaccagccatgtggaacggataaaaaatgcattaaaggaaatgag
agggcaaaaggaagagagagaaagaaagagacagagaaagagggagacagagacaaagag
aaacaaagacagaaacttgagaaacaggttgaagaagctcaaatacagtatggaacagag
aaagacgttggagctaaattaacagctaccggaagactaaaacaatctcttctaaccaga
tggctgaccattgccgaacatcaaaaggctccttccaactgtcaagttatttaa