GENSCAN 1.0	Date run:  5-Nov-116	Time: 18:36:44

Sequence gi568815585r:44841209_45089436 : 248228 bp : 42.11% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   1824   2001  178  1  1   41   80   134 0.214   5.96
 1.02 Intr +   3200   3371  172  2  1  -11   64    89 0.116  -4.38
 1.03 Intr +   9839   9994  156  1  0   66   14   135 0.492   3.19
 1.04 Intr +  10334  10526  193  1  1   32   34   168 0.529   3.94
 1.05 Intr +  20961  21612  652  1  1   63   39   324 0.003  15.04
 1.06 Intr +  26438  26604  167  2  2   98   32    68 0.050   0.88
 1.07 Intr +  30874  31098  225  2  0   52   77   101 0.003   2.43
 1.08 Intr +  31624  31835  212  2  2  110   25    75 0.019   1.11
 1.09 Intr +  34088  34160   73  1  1  131   68    15 0.014   1.86
 1.10 Intr +  35649  35940  292  1  1  -34   -7   327 0.004   6.27
 1.11 Intr +  37109  37236  128  2  2   73   63    55 0.868   0.90
 1.12 Intr +  40726  40949  224  2  2   86   74   182 0.747  13.52
 1.13 Term +  49055  49153   99  1  0   60   47    93 0.076  -0.45
 1.14 PlyA +  49399  49404    6                               1.05

 2.05 PlyA -  49601  49596    6                              -0.45
 2.04 Term -  50803  50522  282  1  0   76   39   179 0.515   6.24
 2.03 Intr -  52725  52579  147  0  0  114   61    13 0.417   0.71
 2.02 Intr -  62730  62511  220  2  1  113   82   170 0.681  16.28
 2.01 Init -  69594  69545   50  0  2   79   97    47 0.577   5.17
 2.00 Prom -  69664  69625   40                              -7.55

 3.00 Prom +  76241  76280   40                              -8.15
 3.01 Init +  76783  76925  143  0  2   59   57   122 0.474   5.86
 3.02 Intr +  83449  83738  290  1  2   42   10   154 0.022  -1.03
 3.03 Term +  89131  89369  239  2  2   54   47   197 0.677   7.55
 3.04 PlyA +  91263  91268    6                               1.05

 4.07 PlyA -  93152  93147    6                               1.05
 4.06 Term - 100114  99998  117  1  0   67   48   142 0.984   5.66
 4.05 Intr - 102466 102234  233  2  2   53   54   206 0.996  10.27
 4.04 Intr - 108630 108514  117  1  0  102  115     6 0.941   4.22
 4.03 Intr - 118366 118173  194  0  2   56  107   167 0.321  13.61
 4.02 Intr - 124728 124636   93  2  0   87   94    87 0.306   7.36
 4.01 Init - 128472 128453   20  0  2   54   83    31 0.320  -1.33
 4.00 Prom - 129788 129749   40                              -7.55

 5.00 Prom + 130018 130057   40                              -4.15
 5.01 Init + 133294 133299    6  0  0   65  106     0 0.586   0.48
 5.02 Term + 135077 135529  453  1  0  -46   43   381 0.958  14.37
 5.03 PlyA + 138545 138550    6                               1.05

 6.00 Prom + 144794 144833   40                              -6.45
 6.01 Init + 148023 148076   54  2  0   86  105    68 0.050   9.64
 6.02 Intr + 148414 148534  121  0  1  -10  107   165 0.030   7.75
 6.03 Intr + 163103 163229  127  0  1   47   86   208 0.008  15.32
 6.04 Intr + 164994 165095  102  0  0   64   54   159 0.465   8.47
 6.05 Intr + 167587 167671   85  1  1   67   69    43 0.290  -0.80
 6.06 Intr + 173744 173875  132  1  0   44   95   152 0.993  11.42
 6.07 Intr + 174224 174388  165  1  0   83  100   123 0.999  12.24
 6.08 Intr + 179122 179220   99  0  0   97  101    47 0.901   6.29
 6.09 Term + 186577 186795  219  0  0  104   42   147 0.993   7.76
 6.10 PlyA + 187032 187037    6                               1.05

 7.05 PlyA - 187105 187100    6                               1.05
 7.04 Term - 205533 205381  153  0  0   45   48   151 0.090   3.74
 7.03 Intr - 211880 211756  125  0  2   68   46    94 0.066   2.58
 7.02 Intr - 213461 213162  300  0  0   36   21   289 0.087  12.78
 7.01 Intr - 241917 241830   88  0  1   77  116    84 0.614   8.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  66144  65898  247  1  1   73   75   149 0.929   7.70
S.002 Init + 147880 148076  197  0  2   77  105   117 0.912  10.75
S.003 Init + 163072 163229  158  0  2   52   86   223 0.989  17.93


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_1|923_aa
XTQGPGIACPSSPSPYQVCGGLSPEIILPRMHIAASVTGPLGPSGGERSARMCEMGCAYS
EGKLTREEPFSIRTEETTTGILGYSHDFPKMSTCLYEVFCFVLASLCVPSDCSETFKGTH
PTNGNNETYATIMSTIMRMFQEAKSHKYFDLETEWSAGPTHHLMDEDNEHLLAIDKIQHC
NDETPSYYRTLGLSDPGTRLCAAEQHHQDTEAPSLIPPLLLDVGPLEPLAISCLLEVLAM
AIRQEKEIKGIQLGKEEVKLSLCADDMIVFLENPIVSAQNLLKLISNFSKVSGYKTSVQK
SQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDMKDLFKENYKPLLDKIKEDTN
KWKNIPCSWIGRINIVKMAILPKVIYRFNAIPIKLPMTLFTELEKTTLKFIWNQKRARIA
KTILSKKNKAGGIMLPDFKLYYKATVTKTAWAGEEKAWITTNHVEVSGSRVLCLLLPPPT
PPHLCAGPGTQSAALPTHSLHFMAFPSEKSEEHREAWIGAPKQGRAAALGRHCPPRIYWG
KMCLEVPRAPLWVGQEEAVWGFKLLSARELEADCWDTRGWEGLQCGQSSYLLSPFGSQGP
PPSGTAGHSLLDSPTDPRILHGLGRFAAVTPQSSWSLAVHQAIRTPCGKPAWVTFDNAHS
LKWSIQGISRGQHLVSGAAERQGHLGEVLGLLLGGAVCKADCWRHSRHAQVLRVSTEEPR
QLMRHTLAESDMEQDMGGHLSDTLCSGDHPRGGTNHARLVSNSDTVWQLRQLQARSAVPM
QLSPVFLKCCECELPAQRTAAVGSTLGQCCSIRYQSTNSEVGPNIHSSTRTTAVFADKPQ
CESTGRKKPFPKGNIGCKDIPLPTMKTVFESLNRAAMTASSHSLSIKQPIQEPLGDVTPV
ATAGPWTLDSRANSRNWTSYVSP

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_1|2772_bp
ngtacccagggccctggaattgcctgcccaagcagcccaagcccttaccaggtctgtgga
ggcctctctccagagatcatcctcccaaggatgcacatcgctgccagtgtgactggacct
ctaggcccaagtggtggcgagcgatcagctcggatgtgtgaaatggggtgtgcatactcg
gaggggaagcttaccagagaggagcccttcagcatccgcacggaggagaccacaacagga
attctaggttatagccatgacttcccaaagatgtccacgtgtctgtatgaagtgttttgt
tttgttctggcatctctctgtgtgccatctgattgttctgaaacttttaagggtactcat
ccgacaaatggtaataacgaaacatatgctaccatcatgtctaccatcatgaggatgttt
caagaagccaagagtcataaatatttcgatctggaaactgagtggtcagctggccccacc
catcaccttatggatgaggacaatgagcatctgttggccattgataagatacagcattgc
aatgatgagaccccaagctactaccgcactttggggctctctgatccagggactcgcctc
tgtgctgctgaacaacatcaccaagacacagaagccccctcactgatccctcctctcctt
ctggatgttggccccctggagcctctggctatctcatgtttgttggaagttctggccatg
gcaatcaggcaggagaaggaaataaagggtattcaattaggaaaagaggaagtcaaattg
tccctgtgtgcagatgacatgattgtatttctagaaaaccccatcgtctcagcccaaaat
ctccttaagctgataagcaacttcagcaaagtctcaggatacaaaaccagtgtgcaaaaa
tcacaagcattcttatacaccaataacagacaaacagagagccaaatcatgagtgaactc
ccattcacaattgcttcaaagagaataaaatacctgggaatccaacttacaagggatatg
aaggacctcttcaaggagaactataaaccactgctcgacaaaataaaagaggatacaaac
aaatggaagaacattccatgctcatggataggaagaatcaatatcgtgaaaatggccata
ctgcccaaggtaatttatagattcaatgctatccccatcaagctaccaatgactctcttc
acagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcattgcc
aagacaatcctaagcaaaaagaacaaagctgggggcatcatgctacctgacttcaaacta
tactacaaggctacagtaaccaaaacagcatgggctggagaagaaaaggcctggatcaca
acaaaccatgtcgaggtgtcagggtcaagagtgctgtgtctgctcctgcccccaccaacc
cctccacacctatgcgctggtcccggtactcagtcagccgcactaccaacccacagcctc
cacttcatggcttttccaagtgagaagtctgaagagcacagggaagcctggataggtgct
cccaagcaagggagagctgctgcattgggaaggcactgccctcccaggatctactggggc
aaaatgtgtctagaagttcccagggccccactctgggtagggcaggaggaggctgtgtgg
ggcttcaagctgctgtccgcccgagagctagaggcagactgctgggacacgaggggctgg
gaaggtcttcagtgtggtcaatccagttatctcctttctcccttcggctcccaggggcca
cctccctccgggacagctggacacagcctgcttgactctcccactgacccccgcatcctg
cacggactgggaagatttgctgcagtgactccacagagctcgtggtcacttgctgtacac
caggcaattagaactccctgtggaaaacctgcttgggtaacctttgacaatgcccactct
ttgaaatggtccatccaagggatttcaagaggtcagcatcttgtgtcaggcgctgcggaa
cgccagggacatctgggcgaagtcctgggcttgctccttggtggagcagtgtgcaaggca
gattgctggagacacagcaggcatgctcaggtattgcgagtgagcaccgaggaaccgagg
cagctcatgcggcacaccttggctgagtccgacatggaacaagatatgggcggtcatctt
tcagataccctctgtagcggggaccatcccaggggaggaacaaaccatgcaagactcgtc
tccaacagcgacaccgtgtggcagctacgccagctgcaggcgaggtcagcagtgccaatg
cagctttctcctgtcttcctcaaatgctgtgagtgtgaacttcctgcacagagaacagct
gcagtggggtccaccctgggacagtgctgctcaatcaggtatcagtcaacaaacagcgaa
gttggacctaatatacacagctccacaagaaccacagcagtgtttgcagacaagccacag
tgtgagtccacaggcagaaagaagccgtttcccaaaggaaacattggctgcaaagatata
cctctgcctaccatgaagacagtctttgaatccttaaacagggcagcaatgactgcttcc
agccatagcctctcaattaaacagcccattcaggaaccacttggcgatgtcaccccagtg
gccactgcaggaccctggacactagactccagagctaacagcaggaactggacgtcatat
gtgtcaccatga

>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_2|232_aa
MKEEGLSIATNCLPKDRTSPQSPPMMSPGNCWSFPSRGLGHSCFDSKSFNAKASVAVRNR
EGSNAAGQLPPGSVVASLDEERKLVLELPLGLKACFTSCLLSRSLSILQRRHPRAITNAP
GVLLLPGHAFLINVYIKTQWGMGQQFLLAGDVCQCLETFLVSQQQLKVGVVLASSGQTEI
RDATKHPTTHTATPTTKNQPAPNVHSAEVETPCSTTANCVFILSDKCLGLYC

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_2|699_bp
atgaaggaagaaggattgtctattgccacaaactgtttgccaaaagataggacttctccc
cagtcccctcctatgatgtcacctggcaactgctggagcttcccaagcagaggattagga
cattcttgttttgactccaagagcttcaacgcaaaggcctctgtggctgttaggaacaga
gagggcagtaatgcggctggccagctgccaccagggtcagtggtggccagcctggatgaa
gaaaggaagctcgtgcttgagctgcctctgggcctcaaggcatgcttcacctcctgcctc
ctgtccagatccctgtcaatcctgcaacgtagacatccgagggccatcactaatgcaccg
ggtgtcctccttctgcctgggcatgcatttttaattaatgtttatatcaagactcagtgg
gggatggggcagcaatttctcctcgcaggggatgtttgccaatgtctggagacatttttg
gtttcacagcagcagttgaaggtgggagtggtattggcatccagtgggcagacagagatc
agggatgctactaaacatcctacaacgcacacagcaacccccacaacaaagaatcagcca
gccccaaatgtccacagtgccgaggttgagacaccctgttctactacagcaaactgtgtt
tttatcctttcagacaaatgcttaggtctatattgttag

>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_3|223_aa
MWETAIATPSLDKLSLLGRLPPTPSRSSVGVKPAPAPARSLQRFKPFSCNLLGIYTWAIN
EDLRIHIAKAELLRVHPQPHSPASSLCIFSIPVNSSFILPIVPSQNPGITLDSILSQPTS
NPSENPTGSIMKIDPELDHFSHSPGGVLEEGSCWLPVPKSDHDHTTSSRQQQLLPVFPPF
PEAASPPPPHLSLLRDTSTYWLASPPQHEASGPAKRDLPSPEG

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_3|672_bp
atgtgggagacggcaatagcgactccaagcctagacaaattgagtcttctcggtcggctt
ccgcccactccatcgcgttcatccgtaggcgtcaaacctgctcctgcgcctgcgcggagt
ctgcagcggtttaaaccgttcagctgcaaccttcttggcatctacacatgggcaattaat
gaggacctcaggattcacatagctaaagctgagctcctgagagtccatccccaaccgcac
tccccagccagctccctctgcatcttctccattccagttaatagcagctttattctcccc
attgttccaagccagaaccctggaatcaccctggattccattctctctcagcctacctcc
aacccctcagaaaatcctactggctccatcatgaaaatagacccagaattggatcacttc
tcccattcccctggaggggtactagaggaagggagctgttggcttcctgttcctaagagt
gaccatgatcacaccacctcatcccggcagcagcagttgcttccagtgtttccaccattt
ccagaagcagcctcaccacctcctccccatctctctctgctcagagacaccagcacctac
tggctggcatcccctcctcagcatgaggcatcggggccagccaagcgggaccttcctagc
ccagagggctga

>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_4|257_aa
MRKVKKRNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHK
WKNDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVT
PALCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEA
KSENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYII
KKDFFGLDTNSAKSKDV

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_4|774_bp
atgaggaaggtgaagaagagaaactatccaactctggccaatattgaaaggaagaagaag
ttaaaacttgaaaaggagaagagaggagcagtattgacaacaacacaatatggcaagatg
aaggggatgtccagacattcacaaatggcaaagatcagaagtcctggcaagaatcacaaa
tggaaaaacgacaattctagacagagagcagtcactggatcaggcagtcacttgtgtgat
ttgaagctagaaggtccaccggaggcaaatgcagatcctcttggtgttttgataaacagt
gattctgagtctgataaggaggagaaaccacaacattctgtgatacccaaggaagtgaca
ccagccctatgctcactaatgagtagctatggcagtctttcagggtcagagagtgagcca
gaagaaactcccatcaagactgaagcagacgttttggcagaaaaccaggttcttgatagc
agtgctcctaagagtccaagtcaagatgttaaagcaactgttagaaatttttcagaagcc
aagagtgagaaccgaaagaaaagctttgaaaaaacaaaccctaagaggaaaaaagattat
cacaactatcaaacgttattcgaaccaagaacacaccatccatatctcttggaaatgctt
ctagctccggacattcgacatgaaagaaatgtgattttgcagtgtgttcggtacatcatc
aaaaaagacttttttggactggatactaattctgcgaaaagtaaagatgtatag

>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_5|152_aa
MKKKEGRRRRRKEEEKKGGRRRRKEKGGGGGGEGEGEEEEEKEEEEEKRRRRKRKRRKRK
KKKKNNNNKRRRKKKQPIDRKETSRTNKTFFKKSSYLGSGVMRRKPCIYKEATYRSQGTS
DTVLQNSYVKLLHGLSPFYVAITEYIIRLDNL

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_5|459_bp
atgaaaaagaaggaaggaaggagaaggagaagaaaggaggaggagaagaaaggaggaagg
agaagaagaaaggagaaaggaggaggaggaggaggcgaaggtgaaggtgaggaggaggag
gagaaggaagaggaagaagagaagaggaggaggaggaagaggaagaggaggaagaggaag
aagaaaaagaagaataacaacaacaagaggaggaggaagaagaaacaaccaatagataga
aaagaaacaagcagaacaaacaaaacattttttaaaaagtccagctacttggggagtggt
gtcatgaggagaaaaccttgtatctataaagaagctacctacagaagccaaggaacttca
gataccgtgcttcaaaattcctatgtcaaactacttcatggtctcagtccattttatgtt
gctataactgaatacatcataagattggataatttataa

>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_6|367_aa
MGGCDSEEGFDPAAGSEDTHICDQCPPPRMARDLIGPALPPGFKARGTAEDEERDPSPGP
ALPPNYKSSSSDSSDSDEDSSSLYEEGNQESEEDDSGPTARKQRKNQDDDDDDDDGFFGP
ALPPGFKKQDDSPPRPIIGPALPPGFIKSTQKSDKGRDDPGQQETDSSEDEDIIGPMPAK
GPVNYNVTTEFEKRAQRMKEKLTKGDDDSSKPIVRESWMTELPPEMKDFGLGPRTFKRRA
DDTSGDRSIWTDTPADRERKAKETQEARKSSSKKDEEHILSGRDKRLAEQVSSYNESKRS
ESLMDIHHKKLKSKAAEDKNKPQERIPFDRDKDLKVNRFDEAQKKALIKKSRELNTRFSH
GKGNMFL

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_6|1104_bp
atggggggctgcgactcagaggaaggctttgacccggctgcgggaagcgaggacactcat
atctgtgaccagtgtccgccaccgcggatggcaagagacctgatcggaccggccctgccg
cccggcttcaaggcccgcggaacagcggaggacgaagagcgggacccgagccctggacca
gctctgccccctaattataaaagcagtagttcagattcatcagacagcgatgaagacagt
agttctttgtacgaagaaggaaatcaagaatctgaagaagatgacagtggtccaactgca
agaaaacagaggaaaaatcaggatgatgacgatgatgatgatgatgggttttttggacca
gcccttcctcctggatttaaaaagcaggatgattctcctccaaggcccataataggtcct
gcattgccacctggtttcattaaatctacacagaaaagtgacaagggcagagatgatcca
ggacaacaggaaacagacagcagtgaagatgaggatattattggaccaatgcctgcaaaa
ggaccagttaactataatgtaacgacagagtttgaaaaaagggcccagagaatgaaagaa
aaactgaccaaaggagatgatgattcatctaaacccattgtaagagagtcatggatgact
gaacttcctccagaaatgaaagactttggtcttgggccaaggacttttaagagaagagct
gatgacacatctggagatcgatcaatctggacagatactccagctgatagggaaaggaaa
gctaaggaaacacaagaagcaaggaagtcatccagtaagaaagatgaagaacatatatta
tcaggaagagataagagactggctgagcaggtatcttcatacaatgaatcaaaaagatca
gaatctcttatggacatacatcataaaaagttaaagagtaaggctgctgaagacaaaaat
aagcctcaagagagaataccatttgaccgtgataaagatctcaaggttaatcggtttgat
gaagctcagaaaaaagccctaataaaaaaatctagagaactaaacaccagattttcacac
ggcaaaggcaatatgtttttataa

>gi568815585r:44841209_45089436|GENSCAN_predicted_peptide_7|221_aa
EGSCTAFMSCFNRGRRSQESQFLTASVEEEPIPTRESESTRSCFSSSLSTTEGTGQSGTS
SLTLIDEKSGVWKKQVRYRADDGSDRSRIIDPVLSVVELVGSSTEVFLRLSCGQLFLAAE
PQCLALGLSAIILQTLYTLPVGLMKPMFSCGVRDGGSAAAACDLGKSMVSKVHMLATFQT
ALQAEAGTQTVLAEKPEKQLSVLDHIRKPLRDICKHPEQRW

>gi568815585r:44841209_45089436|GENSCAN_predicted_CDS_7|666_bp
gaaggcagctgtacggctttcatgagttgtttcaacagagggagaagaagccaggagagc
caatttctgacggcaagtgttgaagaagaacccattcccactagagaatcagaaagtacc
agatcttgcttttccagctccttgagcacaactgaaggcacaggccagtcagggacatct
tccctaaccctgattgatgagaaatcaggggtttggaagaagcaggtgcggtacagagca
gatgatggcagtgaccgtagccgcattattgatcccgtgttgtcagtggtggaacttgtg
gggtccagcacagaagtgtttctaaggctttcttgtgggcaattgttcctggctgcagag
cctcagtgcctggctctgggcctctcagccatcattctccagaccctgtacacgttgcct
gtggggctcatgaagccgatgttctcatgtggagttcgggatggtggctcagctgctgct
gcttgtgacctgggaaaatcaatggtttccaaggttcatatgcttgctaccttccaaaca
gctcttcaggcagaagcaggtacacagacagtgctggcggaaaaacctgagaagcagcta
tcagtattagaccacatacgaaagcctcttcgggacatttgcaagcatccagagcagaga
tggtag