Result of FASTA (omim) for pF1KB7602
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7602, 354 aa
  1>>>pF1KB7602 354 - 354 aa - 354 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6996+/-0.000438; mu= -11.2294+/- 0.028
 mean_var=436.7774+/-89.347, 0's: 0 Z-trim(122.9): 129  B-trim: 0 in 0/57
 Lambda= 0.061368
 statistics sampled from 41770 (41917) to 41770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.491), width:  16
 Scan time:  9.360

The best scores are:                                      opt bits E(85289)
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354) 2431 228.9 1.3e-59
NP_001186699 (OMIM: 600036) homeobox protein OTX1  ( 354) 2431 228.9 1.3e-59
NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289)  784 83.0 8.8e-16
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289)  784 83.0 8.8e-16
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289)  784 83.0 8.8e-16
NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297)  758 80.7 4.4e-15
NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297)  758 80.7 4.4e-15
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299)  572 64.3   4e-10
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314)  347 44.4 0.00041
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325)  342 44.0 0.00058
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302)  340 43.7 0.00062
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562)  347 44.6 0.00063
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284)  336 43.4 0.00076
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263)  329 42.7  0.0011
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  319 41.9  0.0025
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377)  316 41.7  0.0032
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377)  316 41.7  0.0032
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377)  316 41.7  0.0032
NP_057391 (OMIM: 604675) paired mesoderm homeobox  ( 253)  309 40.9  0.0037
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382)  313 41.5  0.0038
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193)  299 39.9  0.0056
NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314)  300 40.2  0.0074


>>NP_055377 (OMIM: 600036) homeobox protein OTX1 [Homo s  (354 aa)
 initn: 2431 init1: 2431 opt: 2431  Z-score: 1191.3  bits: 228.9 E(85289): 1.3e-59
Smith-Waterman score: 2431; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KB7 HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
              310       320       330       340       350    

>>NP_001186699 (OMIM: 600036) homeobox protein OTX1 [Hom  (354 aa)
 initn: 2431 init1: 2431 opt: 2431  Z-score: 1191.3  bits: 228.9 E(85289): 1.3e-59
Smith-Waterman score: 2431; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KB7 HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
              310       320       330       340       350    

>>NP_758840 (OMIM: 600037,610125,613986) homeobox protei  (289 aa)
 initn: 893 init1: 619 opt: 784  Z-score: 404.3  bits: 83.0 E(85289): 8.8e-16
Smith-Waterman score: 1133; 57.6% identity (70.5% similar) in 363 aa overlap (1-354:1-289)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::..:::.:.  .::::::::::::::::::::::::::.::::::::::::
NP_758 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAKKKSSPVRE
       ::::::::::::::::::::::::::::::::::::::   .:. .: ::::::.::.::
NP_758 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPARE
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB7 -SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSI
        :: : .:::::::    :..:  . .::::             ::            ::
NP_758 VSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------------SI
              130           140                                150 

        180       190       200       210       220       230      
pF1KB7 WSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYP
       :::::::: : : :.:          .::::::           :::.: :...:.::: 
NP_758 WSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQASGYSQGY-
             160                 170                  180          

        240       250       260          270       280       290   
pF1KB7 TPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHPLSQSSGHH
       . :.:::::.::.:::.::: :. :     ::::. .....: .. :      : :.   
NP_758 AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA-----SLST---
     190       200        210       220       230            240   

           300       310        320       330       340        350 
pF1KB7 HHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQ-ASWRF
               ::::.:.:.:::. ::::::.  :.     ::::::. :::::::: .::.:
NP_758 --------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYKDQTSSWKF
                      250       260            270        280      

          
pF1KB7 QVL
       :::
NP_758 QVL
          

>>NP_001257452 (OMIM: 600037,610125,613986) homeobox pro  (289 aa)
 initn: 893 init1: 619 opt: 784  Z-score: 404.3  bits: 83.0 E(85289): 8.8e-16
Smith-Waterman score: 1133; 57.6% identity (70.5% similar) in 363 aa overlap (1-354:1-289)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::..:::.:.  .::::::::::::::::::::::::::.::::::::::::
NP_001 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAKKKSSPVRE
       ::::::::::::::::::::::::::::::::::::::   .:. .: ::::::.::.::
NP_001 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPARE
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB7 -SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSI
        :: : .:::::::    :..:  . .::::             ::            ::
NP_001 VSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------------SI
              130           140                                150 

        180       190       200       210       220       230      
pF1KB7 WSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYP
       :::::::: : : :.:          .::::::           :::.: :...:.::: 
NP_001 WSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQASGYSQGY-
             160                 170                  180          

        240       250       260          270       280       290   
pF1KB7 TPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHPLSQSSGHH
       . :.:::::.::.:::.::: :. :     ::::. .....: .. :      : :.   
NP_001 AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA-----SLST---
     190       200        210       220       230            240   

           300       310        320       330       340        350 
pF1KB7 HHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQ-ASWRF
               ::::.:.:.:::. ::::::.  :.     ::::::. :::::::: .::.:
NP_001 --------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYKDQTSSWKF
                      250       260            270        280      

          
pF1KB7 QVL
       :::
NP_001 QVL
          

>>NP_001257453 (OMIM: 600037,610125,613986) homeobox pro  (289 aa)
 initn: 893 init1: 619 opt: 784  Z-score: 404.3  bits: 83.0 E(85289): 8.8e-16
Smith-Waterman score: 1133; 57.6% identity (70.5% similar) in 363 aa overlap (1-354:1-289)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::..:::.:.  .::::::::::::::::::::::::::.::::::::::::
NP_001 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAKKKSSPVRE
       ::::::::::::::::::::::::::::::::::::::   .:. .: ::::::.::.::
NP_001 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPARE
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB7 -SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSI
        :: : .:::::::    :..:  . .::::             ::            ::
NP_001 VSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------------SI
              130           140                                150 

        180       190       200       210       220       230      
pF1KB7 WSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYP
       :::::::: : : :.:          .::::::           :::.: :...:.::: 
NP_001 WSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQASGYSQGY-
             160                 170                  180          

        240       250       260          270       280       290   
pF1KB7 TPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHPLSQSSGHH
       . :.:::::.::.:::.::: :. :     ::::. .....: .. :      : :.   
NP_001 AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA-----SLST---
     190       200        210       220       230            240   

           300       310        320       330       340        350 
pF1KB7 HHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQ-ASWRF
               ::::.:.:.:::. ::::::.  :.     ::::::. :::::::: .::.:
NP_001 --------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYKDQTSSWKF
                      250       260            270        280      

          
pF1KB7 QVL
       :::
NP_001 QVL
          

>>NP_001257454 (OMIM: 600037,610125,613986) homeobox pro  (297 aa)
 initn: 879 init1: 442 opt: 758  Z-score: 391.7  bits: 80.7 E(85289): 4.4e-15
Smith-Waterman score: 1107; 56.3% identity (69.0% similar) in 371 aa overlap (1-354:1-297)

               10        20        30                40        50  
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYP--------ATPRKQRRERTTFTRSQLDV
       ::::::::::..:::.:.  .:::::::::::        :::::::::::::::.::::
NP_001 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDV
               10        20        30        40        50        60

             60        70        80        90          100         
pF1KB7 LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAK
       ::::::::::::::::::::::::::::::::::::::::::::::   .:. .: ::::
NP_001 LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAK
               70        80        90       100       110       120

     110        120       130       140       150       160        
pF1KB7 KKSSPVRE-SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSL
       ::.::.:: :: : .:::::::    :..:  . .::::             ::      
NP_001 KKTSPAREVSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------
              130       140           150                          

      170       180       190       200       210       220        
pF1KB7 STPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQG
             :::::::::: : : :.:          .::::::           :::.: :.
NP_001 ------SIWSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQA
             160       170                 180                  190

      230       240       250       260          270       280     
pF1KB7 GSYGQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHP
       ..:.::: . :.:::::.::.:::.::: :. :     ::::. .....: .. :     
NP_001 SGYSQGY-AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA----
               200       210        220       230       240        

         290       300       310        320       330       340    
pF1KB7 LSQSSGHHHHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYK
        : :.           ::::.:.:.:::. ::::::.  :.     ::::::. ::::::
NP_001 -SLST-----------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYK
                      250       260       270            280       

           350    
pF1KB7 DQ-ASWRFQVL
       :: .::.::::
NP_001 DQTSSWKFQVL
        290       

>>NP_068374 (OMIM: 600037,610125,613986) homeobox protei  (297 aa)
 initn: 879 init1: 442 opt: 758  Z-score: 391.7  bits: 80.7 E(85289): 4.4e-15
Smith-Waterman score: 1107; 56.3% identity (69.0% similar) in 371 aa overlap (1-354:1-297)

               10        20        30                40        50  
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYP--------ATPRKQRRERTTFTRSQLDV
       ::::::::::..:::.:.  .:::::::::::        :::::::::::::::.::::
NP_068 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDV
               10        20        30        40        50        60

             60        70        80        90          100         
pF1KB7 LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAK
       ::::::::::::::::::::::::::::::::::::::::::::::   .:. .: ::::
NP_068 LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAK
               70        80        90       100       110       120

     110        120       130       140       150       160        
pF1KB7 KKSSPVRE-SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSL
       ::.::.:: :: : .:::::::    :..:  . .::::             ::      
NP_068 KKTSPAREVSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------
              130       140           150                          

      170       180       190       200       210       220        
pF1KB7 STPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQG
             :::::::::: : : :.:          .::::::           :::.: :.
NP_068 ------SIWSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQA
             160       170                 180                  190

      230       240       250       260          270       280     
pF1KB7 GSYGQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHP
       ..:.::: . :.:::::.::.:::.::: :. :     ::::. .....: .. :     
NP_068 SGYSQGY-AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA----
               200       210        220       230       240        

         290       300       310        320       330       340    
pF1KB7 LSQSSGHHHHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYK
        : :.           ::::.:.:.:::. ::::::.  :.     ::::::. ::::::
NP_068 -SLST-----------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYK
                      250       260       270            280       

           350    
pF1KB7 DQ-ASWRFQVL
       :: .::.::::
NP_068 DQTSSWKFQVL
        290       

>>NP_000545 (OMIM: 120970,268000,602225,613829) cone-rod  (299 aa)
 initn: 717 init1: 494 opt: 572  Z-score: 302.7  bits: 64.3 E(85289): 4e-10
Smith-Waterman score: 765; 41.4% identity (65.7% similar) in 362 aa overlap (1-354:1-299)

                10        20        30        40        50         
pF1KB7 MMSYLKQPP-YGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAK
       ::.:..  : :..:.:.:.::..::.: .: ::..::::::::::::::::. :::::::
NP_000 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
               10        20        30        40        50        60

      60        70        80        90       100        110        
pF1KB7 TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPA-KKKSSPVRES
       :.:::.. :::::::::::::::::::::::::::::.:. .  .. :. . :. :....
NP_000 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB7 SGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWS
       .:       : :  :...  .  . :.: .:      : .:.:..:....:      :::
NP_000 AG-------TSPRPSTDVCPDPLGISDSYSPPL---PGPSGSPTTAVATVS------IWS
                     130       140          150       160          

      180       190       200         210       220       230      
pF1KB7 PASISPGSAPASVSVPEPLAAPSNTSCMQRS--VAAGAATAAASYPMSYGQGGSY---GQ
       ::: ::        .::           ::.  ::.: . ..: : :.:. ....    .
NP_000 PASESP--------LPEA----------QRAGLVASGPSLTSAPYAMTYAPASAFCSSPS
          170                         180       190       200      

           240       250       260       270       280        290  
pF1KB7 GYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPH-AHHPLSQSSGH
       .: .::: ::.:.:   ::.::  .     :::..  :..      :  :. : : :.  
NP_000 AYGSPSS-YFSGLD--PYLSPMVPQLGGPALSPLSGPSVG------PSLAQSPTSLSG--
        210          220       230       240             250       

            300       310       320       330       340       350  
pF1KB7 HHHHHHHHHQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQ
                :.::    :.. .: :..:.:     ...::...:  : ::::::..:.::
NP_000 ---------QSYG----AYSPVDSLEFKDP-----TGTWKFTYNPMDPLDYKDQSAWKFQ
                      260       270            280       290       

         
pF1KB7 VL
       .:
NP_000 IL
         

>>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm  (314 aa)
 initn: 445 init1: 298 opt: 347  Z-score: 194.8  bits: 44.4 E(85289): 0.00041
Smith-Waterman score: 390; 39.0% identity (63.8% similar) in 218 aa overlap (36-220:96-312)

          10        20        30        40        50        60     
pF1KB7 KQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKTRYPDI
                                     ::::: ::::: .::  :: .::.:.::::
NP_003 SLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDI
          70        80        90       100       110       120     

          70        80        90       100                  110    
pF1KB7 FMREEVALKINLPESRVQVWFKNRRAKCRQQQQSG-----------SGTKSRPAKKKSSP
       . :::.::::.: :.::::::.::::: :.:....           :: ::  ..   : 
NP_003 YTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESK
         130       140       150       160       170       180     

          120          130       140        150       160          
pF1KB7 VRESSGSESSGQFTP---PAVSSSASSSSSASSSSAN-PAAAAAAGLGGNP----VAAAS
         .:.  .:.:   :   :. : .:....... : :. :.::. .: ::.:    .:::.
NP_003 EAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAA
         190       200       210       220       230       240     

        170       180                   190       200         210  
pF1KB7 SLSTPAASSIWSPAS------------ISPGSAPASVSVPEPLAAP--SNTSCMQRSVAA
       . .. ::..  . :.             .:: .: . :.:. :..:  :  : .::  .:
NP_003 AAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPIT-SIPDSLGGPFASVLSSLQRPNGA
         250       260       270       280        290       300    

            220       230       240       250       260       270  
pF1KB7 GAATAAASYPMSYGQGGSYGQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSM
        :: . .:                                                    
NP_003 KAALVKSSMF                                                  
          310                                                      

>>NP_115485 (OMIM: 604529) homeobox protein orthopedia [  (325 aa)
 initn: 356 init1: 271 opt: 342  Z-score: 192.2  bits: 44.0 E(85289): 0.00058
Smith-Waterman score: 357; 37.2% identity (59.9% similar) in 242 aa overlap (6-241:82-300)

                                        10        20         30    
pF1KB7                          MMSYLKQPPYGMNGLGLAGPAMDLLHPS-VGYPAT
                                     :::  : .:    ::     .:: .:    
NP_115 VEGATLLPGEDITTVGSTPASLAVSAKDPDKQP--GPQG----GP-----NPSQAGQQQG
              60        70        80              90            100

           40        50        60        70        80        90    
pF1KB7 PRKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCR
        .::.:.:: :: .::. ::  ::::.:::::::::.::.:.: ::::::::.::::: .
NP_115 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK
              110       120       130       140       150       160

          100       110       120       130       140          150 
pF1KB7 QQQQSGSGTKSRPAKKKSSPVRESSGSESSGQFTPPAVSSSASSSSSASSSSANP---AA
       ..... .  .. :.    .:        .  ::   :....:. ..:  :  ::    ::
NP_115 KRKKTTNVFRA-PGTLLPTP--------GLPQFPSAAAAAAAAMGDSLCSFHANDTRWAA
              170                180       190       200       210 

             160       170       180       190       200       210 
pF1KB7 AAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVA
       ::  :..  :.  : . .   :.:. :  :.. :  : :... . ::. :: . .:  . 
NP_115 AAMPGVSQLPLPPALGRQQAMAQSL-SQCSLAAGPPPNSMGLSNSLAG-SNGAGLQSHLY
             220       230        240       250        260         

               220       230       240       250       260         
pF1KB7 AGA--ATAAASYPMSYGQGGSYGQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAP
         :  . . :: :   . .::  :   .:.::                            
NP_115 QPAFPGMVPASLPGPSNVSGS-PQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT   
     270       280       290        300       310       320        

     270       280       290       300       310       320         
pF1KB7 SSMAGHHHHHPHAHHPLSQSSGHHHHHHHHHHQGYGGSGLAFNSADCLDYKEPGAAAASS




354 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:27:44 2016 done: Sat Nov  5 18:27:46 2016
 Total Scan time:  9.360 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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