Result of FASTA (ccds) for pF1KB7602
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7602, 354 aa
  1>>>pF1KB7602 354 - 354 aa - 354 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0203+/-0.00107; mu= -7.4999+/- 0.065
 mean_var=400.3179+/-82.210, 0's: 0 Z-trim(115.0): 105  B-trim: 0 in 0/52
 Lambda= 0.064102
 statistics sampled from 15486 (15585) to 15486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.479), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS1873.1 OTX1 gene_id:5013|Hs108|chr2            ( 354) 2431 238.4 7.2e-63
CCDS41960.1 OTX2 gene_id:5015|Hs108|chr14          ( 289)  784 86.0 4.4e-17
CCDS9728.1 OTX2 gene_id:5015|Hs108|chr14           ( 297)  758 83.6 2.4e-16
CCDS12706.1 CRX gene_id:1406|Hs108|chr19           ( 299)  572 66.4 3.6e-11


>>CCDS1873.1 OTX1 gene_id:5013|Hs108|chr2                 (354 aa)
 initn: 2431 init1: 2431 opt: 2431  Z-score: 1242.2  bits: 238.4 E(32554): 7.2e-63
Smith-Waterman score: 2431; 100.0% identity (100.0% similar) in 354 aa overlap (1-354:1-354)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPAKKKSSPVRESSG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYPTPSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPHAHHPLSQSSGHHHHHHHHH
              250       260       270       280       290       300

              310       320       330       340       350    
pF1KB7 HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 HQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQVL
              310       320       330       340       350    

>>CCDS41960.1 OTX2 gene_id:5015|Hs108|chr14               (289 aa)
 initn: 893 init1: 619 opt: 784  Z-score: 420.1  bits: 86.0 E(32554): 4.4e-17
Smith-Waterman score: 1133; 57.6% identity (70.5% similar) in 363 aa overlap (1-354:1-289)

               10        20        30        40        50        60
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAKT
       ::::::::::..:::.:.  .::::::::::::::::::::::::::.::::::::::::
CCDS41 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKT
               10        20        30        40        50        60

               70        80        90          100       110       
pF1KB7 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAKKKSSPVRE
       ::::::::::::::::::::::::::::::::::::::   .:. .: ::::::.::.::
CCDS41 RYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPARE
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KB7 -SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSI
        :: : .:::::::    :..:  . .::::             ::            ::
CCDS41 VSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------------SI
              130           140                                150 

        180       190       200       210       220       230      
pF1KB7 WSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQGGSYGQGYP
       :::::::: : : :.:          .::::::           :::.: :...:.::: 
CCDS41 WSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQASGYSQGY-
             160                 170                  180          

        240       250       260          270       280       290   
pF1KB7 TPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHPLSQSSGHH
       . :.:::::.::.:::.::: :. :     ::::. .....: .. :      : :.   
CCDS41 AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA-----SLST---
     190       200        210       220       230            240   

           300       310        320       330       340        350 
pF1KB7 HHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQ-ASWRF
               ::::.:.:.:::. ::::::.  :.     ::::::. :::::::: .::.:
CCDS41 --------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYKDQTSSWKF
                      250       260            270        280      

          
pF1KB7 QVL
       :::
CCDS41 QVL
          

>>CCDS9728.1 OTX2 gene_id:5015|Hs108|chr14                (297 aa)
 initn: 879 init1: 442 opt: 758  Z-score: 407.0  bits: 83.6 E(32554): 2.4e-16
Smith-Waterman score: 1107; 56.3% identity (69.0% similar) in 371 aa overlap (1-354:1-297)

               10        20        30                40        50  
pF1KB7 MMSYLKQPPYGMNGLGLAGPAMDLLHPSVGYP--------ATPRKQRRERTTFTRSQLDV
       ::::::::::..:::.:.  .:::::::::::        :::::::::::::::.::::
CCDS97 MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDV
               10        20        30        40        50        60

             60        70        80        90          100         
pF1KB7 LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ---SGSGTKSRPAK
       ::::::::::::::::::::::::::::::::::::::::::::::   .:. .: ::::
CCDS97 LEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAK
               70        80        90       100       110       120

     110        120       130       140       150       160        
pF1KB7 KKSSPVRE-SSGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSL
       ::.::.:: :: : .:::::::    :..:  . .::::             ::      
CCDS97 KKTSPAREVSSESGTSGQFTPP----SSTSVPTIASSSA-------------PV------
              130       140           150                          

      170       180       190       200       210       220        
pF1KB7 STPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAAGAATAAASYPMSYGQG
             :::::::::: : : :.:          .::::::           :::.: :.
CCDS97 ------SIWSPASISPLSDPLSTS----------SSCMQRS-----------YPMTYTQA
             160       170                 180                  190

      230       240       250       260          270       280     
pF1KB7 GSYGQGYPTPSSSYFGGVDCSSYLAPMHSHHHPHQ---LSPMAPSSMAGHHHHHPHAHHP
       ..:.::: . :.:::::.::.:::.::: :. :     ::::. .....: .. :     
CCDS97 SGYSQGY-AGSTSYFGGMDCGSYLTPMH-HQLPGPGATLSPMGTNAVTSHLNQSPA----
               200       210        220       230       240        

         290       300       310        320       330       340    
pF1KB7 LSQSSGHHHHHHHHHHQGYGGSGLAFNSA-DCLDYKEPGAAAASSAWKLNFNSPDCLDYK
        : :.           ::::.:.:.:::. ::::::.  :.     ::::::. ::::::
CCDS97 -SLST-----------QGYGASSLGFNSTTDCLDYKDQTAS-----WKLNFNA-DCLDYK
                      250       260       270            280       

           350    
pF1KB7 DQ-ASWRFQVL
       :: .::.::::
CCDS97 DQTSSWKFQVL
        290       

>>CCDS12706.1 CRX gene_id:1406|Hs108|chr19                (299 aa)
 initn: 717 init1: 494 opt: 572  Z-score: 314.0  bits: 66.4 E(32554): 3.6e-11
Smith-Waterman score: 765; 41.4% identity (65.7% similar) in 362 aa overlap (1-354:1-299)

                10        20        30        40        50         
pF1KB7 MMSYLKQPP-YGMNGLGLAGPAMDLLHPSVGYPATPRKQRRERTTFTRSQLDVLEALFAK
       ::.:..  : :..:.:.:.::..::.: .: ::..::::::::::::::::. :::::::
CCDS12 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAK
               10        20        30        40        50        60

      60        70        80        90       100        110        
pF1KB7 TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSRPA-KKKSSPVRES
       :.:::.. :::::::::::::::::::::::::::::.:. .  .. :. . :. :....
CCDS12 TQYPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRK
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB7 SGSESSGQFTPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWS
       .:       : :  :...  .  . :.: .:      : .:.:..:....:      :::
CCDS12 AG-------TSPRPSTDVCPDPLGISDSYSPPL---PGPSGSPTTAVATVS------IWS
                     130       140          150       160          

      180       190       200         210       220       230      
pF1KB7 PASISPGSAPASVSVPEPLAAPSNTSCMQRS--VAAGAATAAASYPMSYGQGGSY---GQ
       ::: ::        .::           ::.  ::.: . ..: : :.:. ....    .
CCDS12 PASESP--------LPEA----------QRAGLVASGPSLTSAPYAMTYAPASAFCSSPS
          170                         180       190       200      

           240       250       260       270       280        290  
pF1KB7 GYPTPSSSYFGGVDCSSYLAPMHSHHHPHQLSPMAPSSMAGHHHHHPH-AHHPLSQSSGH
       .: .::: ::.:.:   ::.::  .     :::..  :..      :  :. : : :.  
CCDS12 AYGSPSS-YFSGLD--PYLSPMVPQLGGPALSPLSGPSVG------PSLAQSPTSLSG--
        210          220       230       240             250       

            300       310       320       330       340       350  
pF1KB7 HHHHHHHHHQGYGGSGLAFNSADCLDYKEPGAAAASSAWKLNFNSPDCLDYKDQASWRFQ
                :.::    :.. .: :..:.:     ...::...:  : ::::::..:.::
CCDS12 ---------QSYG----AYSPVDSLEFKDP-----TGTWKFTYNPMDPLDYKDQSAWKFQ
                      260       270            280       290       

         
pF1KB7 VL
       .:
CCDS12 IL
         




354 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:27:44 2016 done: Sat Nov  5 18:27:44 2016
 Total Scan time:  3.200 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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