Result of FASTA (omim) for pF1KB6745
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6745, 101 aa
  1>>>pF1KB6745 101 - 101 aa - 101 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7337+/-0.000264; mu= 11.8371+/- 0.016
 mean_var=51.0644+/-10.035, 0's: 0 Z-trim(119.7): 27  B-trim: 190 in 1/53
 Lambda= 0.179480
 statistics sampled from 33963 (33990) to 33963 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.399), width:  16
 Scan time:  4.360

The best scores are:                                      opt bits E(85289)
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101)  657 176.9   5e-45
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104)  531 144.3 3.4e-35
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110)  467 127.7 3.4e-30
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107)  265 75.4 1.9e-14
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114)  260 74.1 4.8e-14
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128)  255 72.8 1.3e-13
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114)  245 70.2 7.1e-13
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107)  242 69.4 1.2e-12
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107)  233 67.1 5.8e-12
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  190 55.9 1.2e-08
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10  (  98)  150 45.6 1.6e-05
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125)  141 43.3 9.9e-05
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13  ( 109)  130 40.4 0.00063
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109)  130 40.4 0.00063
NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr (  89)  114 36.2  0.0094


>>NP_002610 (OMIM: 173460) platelet factor 4 precursor [  (101 aa)
 initn: 657 init1: 657 opt: 657  Z-score: 929.4  bits: 176.9 E(85289): 5e-45
Smith-Waterman score: 657; 100.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB6 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLEV
               10        20        30        40        50        60

               70        80        90       100 
pF1KB6 IKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
       :::::::::::::::::::::::::::::::::::::::::
NP_002 IKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
               70        80        90       100 

>>NP_002611 (OMIM: 173461) platelet factor 4 variant pre  (104 aa)
 initn: 542 init1: 529 opt: 531  Z-score: 752.9  bits: 144.3 E(85289): 3.4e-35
Smith-Waterman score: 531; 84.6% identity (89.4% similar) in 104 aa overlap (1-101:1-104)

                  10        20        30        40        50       
pF1KB6 MSSAAG---FCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITS
       :::::      :.:  .:::.:::::.::::: :::::::::::::::::::::::::::
NP_002 MSSAARSRLTRATRQEMLFLALLLLPVVVAFARAEAEEDGDLQCLCVKTTSQVRPRHITS
               10        20        30        40        50        60

        60        70        80        90       100 
pF1KB6 LEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
       ::::::::::::::::::::::::::::::: :::::::. :::
NP_002 LEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES
               70        80        90       100    

>>XP_005265753 (OMIM: 173460) PREDICTED: platelet factor  (110 aa)
 initn: 467 init1: 467 opt: 467  Z-score: 663.0  bits: 127.7 E(85289): 3.4e-30
Smith-Waterman score: 467; 100.0% identity (100.0% similar) in 71 aa overlap (31-101:40-110)

               10        20        30        40        50        60
pF1KB6 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLEV
                                     ::::::::::::::::::::::::::::::
XP_005 PAECLATVPGAAPAPPTWLEQLLSGGGVIYAEAEEDGDLQCLCVKTTSQVRPRHITSLEV
      10        20        30        40        50        60         

               70        80        90       100 
pF1KB6 IKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
       :::::::::::::::::::::::::::::::::::::::::
XP_005 IKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES
      70        80        90       100       110

>>NP_001502 (OMIM: 155730) growth-regulated alpha protei  (107 aa)
 initn: 189 init1: 164 opt: 265  Z-score: 380.5  bits: 75.4 E(85289): 1.9e-14
Smith-Waterman score: 265; 46.6% identity (71.8% similar) in 103 aa overlap (1-101:1-103)

                10        20         30        40        50        
pF1KB6 MSSAAGFCA-SRPGLLFLGLLLLPLVVA-FASAEAEEDGDLQCLCVKTTSQVRPRHITSL
       :. ::   : : : :: ..:::: ::.:   .: :    .:.: :..: . ..:..: :.
NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV
               10        20        30        40        50        60

       60        70        80        90       100     
pF1KB6 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES    
       .: . ::::  ...::::::::: ::.  .:. ::::.:.:.:    
NP_001 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN
               70        80        90       100       

>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu  (114 aa)
 initn: 240 init1: 199 opt: 260  Z-score: 373.1  bits: 74.1 E(85289): 4.8e-14
Smith-Waterman score: 260; 40.2% identity (75.3% similar) in 97 aa overlap (4-100:15-108)

                          10        20        30        40         
pF1KB6            MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ
                     ....::    :..: ::  :  .: :.  :    .:.:.:..::. 
NP_002 MSLLSSRAARVPGPSSSLCAL---LVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG
               10        20           30        40        50       

      50        60        70        80        90       100      
pF1KB6 VRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
       :.:. :..:.:.  ::.:  ....:.::::..:::: .::. ::.:.:.:.      
NP_002 VHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
        60        70        80        90       100       110    

>>NP_002695 (OMIM: 121010) platelet basic protein prepro  (128 aa)
 initn: 245 init1: 212 opt: 255  Z-score: 365.3  bits: 72.8 E(85289): 1.3e-13
Smith-Waterman score: 255; 52.9% identity (80.0% similar) in 70 aa overlap (30-99:52-121)

                10        20        30        40        50         
pF1KB6  MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQVRPRHITSLE
                                     : ...  ..:.:.:.:::: ..:..: :::
NP_002 VLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLE
              30        40        50        60        70        80 

      60        70        80        90       100      
pF1KB6 VIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
       ::  : ::  ...:::::.::::::: .::  :::..: :       
NP_002 VIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
              90       100       110       120        

>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu  (114 aa)
 initn: 238 init1: 166 opt: 245  Z-score: 352.1  bits: 70.2 E(85289): 7.1e-13
Smith-Waterman score: 245; 40.4% identity (72.7% similar) in 99 aa overlap (4-101:15-109)

                          10        20         30        40        
pF1KB6            MSSAAGFCASRPGLLFLGLLLLPL-VVAFASAEAEEDGDLQCLCVKTTS
                     ....::    :: : ::: :   .: :.  .    .:.: :...: 
NP_002 MSLPSSRAARVPGPSGSLCA----LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTL
               10        20            30        40        50      

       50        60        70        80        90       100      
pF1KB6 QVRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
       .: :. : .:.:. :::.:  ....:.::::...::: .::. ::.:.:.:.:     
NP_002 RVNPKTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
         60        70        80        90       100       110    

>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu  (107 aa)
 initn: 181 init1: 156 opt: 242  Z-score: 348.3  bits: 69.4 E(85289): 1.2e-12
Smith-Waterman score: 242; 44.1% identity (72.0% similar) in 93 aa overlap (10-101:11-103)

                10        20        30         40        50        
pF1KB6  MSSAAGFCASRPGLLFLGLLLLPLVVAFASAE-AEEDGDLQCLCVKTTSQVRPRHITSL
                 : : :: ..:::: ::.:   :  :    .:.: :..: . .. ..: :.
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
               10        20        30        40        50        60

       60        70        80        90       100     
pF1KB6 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES    
       .: . ::::  ...:::::::.: ::.  .:. ::::.:.:..    
NP_002 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN
               70        80        90       100       

>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu  (107 aa)
 initn: 176 init1: 151 opt: 233  Z-score: 335.7  bits: 67.1 E(85289): 5.8e-12
Smith-Waterman score: 233; 44.0% identity (71.4% similar) in 91 aa overlap (10-99:11-101)

                10        20        30         40        50        
pF1KB6  MSSAAGFCASRPGLLFLGLLLLPLVVAFASAE-AEEDGDLQCLCVKTTSQVRPRHITSL
                 : : :: ..:::: ::.:   :  :    .:.: :..: . .. ..: :.
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
               10        20        30        40        50        60

       60        70        80        90       100     
pF1KB6 EVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES    
       .: . ::::  ...:::::::.: ::.  .:. .:::.:.:      
NP_002 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
               70        80        90       100       

>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo  (99 aa)
 initn: 139 init1: 131 opt: 190  Z-score: 276.1  bits: 55.9 E(85289): 1.2e-08
Smith-Waterman score: 190; 29.3% identity (71.7% similar) in 92 aa overlap (10-100:3-94)

               10        20        30        40         50         
pF1KB6 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ-VRPRHITSLE
                :. .. .:. .:.  ..  ...  .   .:.: :.:: :.  .:. :  :.
NP_000        MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELR
                      10        20        30        40        50   

      60        70        80        90       100     
pF1KB6 VIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES    
       ::..:::: ....:. :..::..::: .    .....:.:.     
NP_000 VIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS
            60        70        80        90         




101 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 18:17:03 2016 done: Sat Nov  5 18:17:03 2016
 Total Scan time:  4.360 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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