FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0690, 401 aa
  1>>>pF1KE0690 401 - 401 aa - 401 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5882+/-0.0014; mu= -13.5749+/- 0.079
 mean_var=480.6195+/-112.264, 0's: 0 Z-trim(109.8): 99  B-trim: 692 in 1/49
 Lambda= 0.058502
 statistics sampled from 11114 (11169) to 11114 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.343), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS13024.2 STK35 gene_id:140901|Hs108|chr20       ( 534) 2668 240.3 3.3e-63
CCDS274.1 PDIK1L gene_id:149420|Hs108|chr1         ( 341) 1532 144.2 1.8e-34


>>CCDS13024.2 STK35 gene_id:140901|Hs108|chr20            (534 aa)
 initn: 2668 init1: 2668 opt: 2668  Z-score: 1248.3  bits: 240.3 E(32554): 3.3e-63
Smith-Waterman score: 2668; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:134-534)

                                             10        20        30
pF1KE0                               METGKDGARRGTQSPERKRRSPVPRAPSTK
                                     ::::::::::::::::::::::::::::::
CCDS13 PAPPRPRAGRRDEAGGARAAPLLLPPPPAAMETGKDGARRGTQSPERKRRSPVPRAPSTK
           110       120       130       140       150       160   

               40        50        60        70        80        90
pF1KE0 LRPAAAARAMDPVAAEAPGEAFLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRPAAAARAMDPVAAEAPGEAFLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGR
           170       180       190       200       210       220   

              100       110       120       130       140       150
pF1KE0 SGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SGARVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNK
           230       240       250       260       270       280   

              160       170       180       190       200       210
pF1KE0 SSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SSQLYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQ
           290       300       310       320       330       340   

              220       230       240       250       260       270
pF1KE0 LTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LTSAIAFLHKNHIVHRDLKPDNILITERSGTPILKVADFGLSKVCAGLAPRGKEGNQDNK
           350       360       370       380       390       400   

              280       290       300       310       320       330
pF1KE0 NVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKELL
           410       420       430       440       450       460   

              340       350       360       370       380       390
pF1KE0 GTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAFEL
           470       480       490       500       510       520   

              400 
pF1KE0 ETRMDQVTCAA
       :::::::::::
CCDS13 ETRMDQVTCAA
           530    

>>CCDS274.1 PDIK1L gene_id:149420|Hs108|chr1              (341 aa)
 initn: 1491 init1: 527 opt: 1532  Z-score: 732.5  bits: 144.2 E(32554): 1.8e-34
Smith-Waterman score: 1532; 69.3% identity (87.0% similar) in 339 aa overlap (64-397:3-332)

            40        50        60        70        80        90   
pF1KE0 AAAARAMDPVAAEAPGEAFLARRRPEGGGGSARPRYSLLAEIGRGSYGVVYEAVAGRSGA
                                     :..:.:.:. :.::::::::::::  ...:
CCDS27                             MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSA
                                           10        20        30  

           100       110       120       130       140       150   
pF1KE0 RVAVKKIRCDAPENVELALAEFWALTSLKRRHQNVVQFEECVLQRNGLAQRMSHGNKSSQ
       ::::::::: ::::::::: :::::.:.: .: ::...:::.::..:..:.::::..:: 
CCDS27 RVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHLEECILQKDGMVQKMSHGSNSS-
             40        50        60        70        80        90  

           160       170       180       190       200       210   
pF1KE0 LYLRLVETSLKGERILGYAEEPCYLWFVMEFCEGGDLNQYVLSRRPDPATNKSFMLQLTS
       :::.::::::::: :    .   ::::::.::.:::.:.:.:::.:.  :: ::::::.:
CCDS27 LYLQLVETSLKGE-IAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKTNTSFMLQLSS
             100        110       120       130       140       150

           220       230        240           250       260        
pF1KE0 AIAFLHKNHIVHRDLKPDNILITE-RSGT----PILKVADFGLSKVCAGLAPRGKEGNQD
       :.::::::.:.:::::::::::.. :  :    : ::::::::::::..       :.. 
CCDS27 ALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSKVCSA------SGQNP
              160       170       180       190             200    

      270       280       290       300       310       320        
pF1KE0 NKNVNVNKYWLSSACGSDFYMAPEVWEGHYTAKADIFALGIIIWAMIERITFIDSETKKE
       .. :.::: .::.:::.:::::::::::::::::::::::::::::.:::::::.:::::
CCDS27 EEPVSVNKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKE
          210       220       230       240       250       260    

      330       340       350       360       370       380        
pF1KE0 LLGTYIKQGTEIVPVGEALLENPKMELHIPQKRRTSMSEGIKQLLKDMLAANPQDRPDAF
       :::.:.::::::::::::::::::::: :: :.. ::.  .:::.:.:::::::::::::
CCDS27 LLGSYVKQGTEIVPVGEALLENPKMELLIPVKKK-SMNGRMKQLIKEMLAANPQDRPDAF
          270       280       290        300       310       320   

      390       400      
pF1KE0 ELETRMDQVTCAA     
       ::: :. :.         
CCDS27 ELELRLVQIAFKDSSWET
           330       340 




401 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:59:19 2016 done: Sat Nov  5 17:59:19 2016
 Total Scan time:  3.110 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]