Result of FASTA (ccds) for pF1KB0928
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0928, 364 aa
  1>>>pF1KB0928 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3907+/-0.00122; mu= 13.1530+/- 0.074
 mean_var=160.3482+/-34.923, 0's: 0 Z-trim(107.0): 117  B-trim: 558 in 1/49
 Lambda= 0.101284
 statistics sampled from 9173 (9294) to 9173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.285), width:  16
 Scan time:  2.370

The best scores are:                                      opt bits E(32554)
CCDS41676.1 RBM4 gene_id:5936|Hs108|chr11          ( 364) 2388 361.2 8.2e-100
CCDS8149.1 RBM4B gene_id:83759|Hs108|chr11         ( 359) 2134 324.0 1.2e-88
CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11     ( 339) 1493 230.4 1.8e-60
CCDS55777.1 RBM4 gene_id:5936|Hs108|chr11          ( 173)  911 145.0 4.7e-35
CCDS55776.1 RBM4 gene_id:5936|Hs108|chr11          ( 143)  905 144.0 7.6e-35
CCDS66144.1 RBM4B gene_id:83759|Hs108|chr11        ( 143)  899 143.1 1.4e-34
CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11         ( 669)  471 81.4 2.6e-15
CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11        ( 156)  433 75.1 4.7e-14


>>CCDS41676.1 RBM4 gene_id:5936|Hs108|chr11               (364 aa)
 initn: 2388 init1: 2388 opt: 2388  Z-score: 1905.5  bits: 361.2 E(32554): 8.2e-100
Smith-Waterman score: 2388; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAAS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRAR
              310       320       330       340       350       360

           
pF1KB0 YSAF
       ::::
CCDS41 YSAF
           

>>CCDS8149.1 RBM4B gene_id:83759|Hs108|chr11              (359 aa)
 initn: 1878 init1: 1466 opt: 2134  Z-score: 1704.9  bits: 324.0 E(32554): 1.2e-88
Smith-Waterman score: 2134; 89.3% identity (97.0% similar) in 365 aa overlap (1-364:1-359)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       :::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS81 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::.
CCDS81 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPVDRT
              130       140       150       160       170       180

              190       200       210       220       230          
pF1KB0 GRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAAA-
       :::::.:::::::::::::::::.::.:.:::.:::::: :::: :. ::::::::::: 
CCDS81 GRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDAYGALD-YYKRYRV-RSYEAVAAAAAA
              190       200       210        220        230        

     240       250       260       270       280       290         
pF1KB0 SVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTAA
       :.:::::::.:.:::::.:...:::.:::.:::::::::.::::::.:: :::::.    
CCDS81 SAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDPYDRHLLPNSGAAATSAAMAAAAAT----
      240       250       260       270       280       290        

     300       310       320       330       340       350         
pF1KB0 STSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA
       ..:::::::::::::.: .:::::::::: ::::::::::.:::::::::::::::.:::
CCDS81 TSSYYGRDRSPLRRAAAMLPTVGEGYGYGPESELSQASAATRNSLYDMARYEREQYVDRA
          300       310       320       330       340       350    

     360    
pF1KB0 RYSAF
       :::::
CCDS81 RYSAF
            

>>CCDS55774.1 RBM4 gene_id:100526737|Hs108|chr11          (339 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1199.0  bits: 230.4 E(32554): 1.8e-60
Smith-Waterman score: 1730; 74.8% identity (85.2% similar) in 365 aa overlap (2-364:1-339)

               10         20        30        40        50         
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
CCDS55  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .  .. :. :::.: .::..:::. ::. : :::::.::       
CCDS55 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
                          :::::::::::::::::::::::::::::::::::::::::
CCDS55 -------------------GKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
                               120       130       140       150   

      180       190       200       210       220       230        
pF1KB0 RSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSGRVADLTEQYNEQYGAVRTPYTMSYGDSLYYNNAYGALDAYYKRCRAARSYEAVAAAA
           160       170       180       190       200       210   

      240       250       260       270       280       290        
pF1KB0 ASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASVYNYAEQTLSQLPQVQNTAMASHLTSTSLDPYDRHLLPTSGAAATAAAAAAAAAAVTA
           220       230       240       250       260       270   

      300       310       320       330       340       350        
pF1KB0 ASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADR
           280       290       300       310       320       330   

      360    
pF1KB0 ARYSAF
       ::::::
CCDS55 ARYSAF
             

>>CCDS55777.1 RBM4 gene_id:5936|Hs108|chr11               (173 aa)
 initn: 911 init1: 911 opt: 911  Z-score: 742.8  bits: 145.0 E(32554): 4.7e-35
Smith-Waterman score: 911; 100.0% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       :::::::::::::::::::                                         
CCDS55 AEDAVEAIRGLDNTEFQGKITPVTEGYCCCNKGHTYIFKNCNLILESRKSRRC       
              130       140       150       160       170          

>>CCDS55776.1 RBM4 gene_id:5936|Hs108|chr11               (143 aa)
 initn: 905 init1: 905 opt: 905  Z-score: 739.0  bits: 144.0 E(32554): 7.6e-35
Smith-Waterman score: 905; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       ::::::::::::::::::                                          
CCDS55 AEDAVEAIRGLDNTEFQGGMCVG                                     
              130       140                                        

>>CCDS66144.1 RBM4B gene_id:83759|Hs108|chr11             (143 aa)
 initn: 1093 init1: 899 opt: 899  Z-score: 734.3  bits: 143.1 E(32554): 1.4e-34
Smith-Waterman score: 899; 97.8% identity (100.0% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KB0 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHMER
       :::::::::::::::.:::::::::::::::.::::::::::::::::::::::::::::
CCDS66 HGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPIDRS
       ::::::::::::::::::.                                         
CCDS66 AEDAVEAIRGLDNTEFQGRIIAD                                     
              130       140                                        

>>CCDS8147.1 RBM14 gene_id:10432|Hs108|chr11              (669 aa)
 initn: 505 init1: 322 opt: 471  Z-score: 388.5  bits: 81.4 E(32554): 2.6e-15
Smith-Waterman score: 487; 34.3% identity (59.8% similar) in 321 aa overlap (2-305:1-319)

               10         20        30        40        50         
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
CCDS81  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .  .. :. :::.: .::..:::. ::. : :::::.:::::::::
CCDS81 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
       :.  ::  ::  :.. : .:::..:.:::.  . .::.. :::  .  : :  .   :  
CCDS81 EKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKGPGLAVQSG-DKTKKPGAGDTAFP-G
     120       130       140       150       160        170        

      180         190           200          210           220     
pF1KB0 RSGRVA--DLTEQYNEQYGA----VRTPYTMSYG---DSLYYN---NAYGA-LDAYYKRC
        .:  :  :  . .... :.    .: :    .:   . :  .    .: : : :     
CCDS81 TGGFSATFDYQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATY
       180       190       200       210       220       230       

         230       240       250       260       270         280   
pF1KB0 RAARSYEAVAAAAASVYNYAEQTLSQLPQVQNTAMASHLTSTSLD-PYDRHLL-PTSGAA
       ::  :    ::  :.            :.. ..:      :.::  ::  .:  :.: .:
CCDS81 RAQPSVSLGAAYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSSQSA
       240       250       260       270       280       290       

           290       300       310       320       330       340   
pF1KB0 ATAAAAAAAAAAVTAASTSYYGRDRSPLRRATAPVPTVGEGYGYGHESELSQASAAARNS
       :... .  ..:  .:.. : ::                                      
CCDS81 AASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAASSYG
       300       310       320       330       340       350       

>>CCDS55772.1 RBM14 gene_id:10432|Hs108|chr11             (156 aa)
 initn: 391 init1: 288 opt: 433  Z-score: 365.8  bits: 75.1 E(32554): 4.7e-14
Smith-Waterman score: 433; 45.3% identity (75.7% similar) in 148 aa overlap (2-147:1-148)

               10         20        30        40        50         
pF1KB0 MVKLFIGNLP-REATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYK
        .:.:.::.   ..: .:. .::  :: :. : ..:...:::......:  ::. :: ..
CCDS55  MKIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHE
                10        20        30        40        50         

      60         70        80        90       100       110        
pF1KB0 LH-GVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKDYAFVHM
       :. :  . :: :. .  .. :. :::.: .::..:::. ::. : :::::.:::::::::
CCDS55 LRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHM
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 ERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECPID
       :.  ::  ::  :.. : .:::..:.:::                               
CCDS55 EKEADAKAAIAQLNGKEVKGKRINVELSTKGMVPTGV                       
     120       130       140       150                             




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:57:35 2016 done: Sat Nov  5 17:57:35 2016
 Total Scan time:  2.370 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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