FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0921, 121 aa
  1>>>pF1KB0921 121 - 121 aa - 121 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8028+/-0.000657; mu= 12.0340+/- 0.039
 mean_var=46.0775+/- 9.114, 0's: 0 Z-trim(107.1): 8  B-trim: 0 in 0/50
 Lambda= 0.188943
 statistics sampled from 9380 (9387) to 9380 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.288), width:  16
 Scan time:  1.620

The best scores are:                                      opt bits E(32554)
CCDS42185.1 CHTF8 gene_id:54921|Hs108|chr16        ( 121)  786 221.2 1.3e-58


>>CCDS42185.1 CHTF8 gene_id:54921|Hs108|chr16             (121 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1166.0  bits: 221.2 E(32554): 1.3e-58
Smith-Waterman score: 786; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB0 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MVQIVISSARAGGLAEWVLMELQGEIEARYSTGLAGNLLGDLHYTTEGIPVLIVGHHILY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GKIIHLEKPFAVLVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIITSVPKK
               70        80        90       100       110       120

        
pF1KB0 V
       :
CCDS42 V
        




121 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:56:56 2016 done: Sat Nov  5 17:56:56 2016
 Total Scan time:  1.620 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]