Result of FASTA (ccds) for pF1KE0632
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0632, 376 aa
  1>>>pF1KE0632 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6065+/-0.000761; mu= 11.9187+/- 0.046
 mean_var=128.6393+/-24.546, 0's: 0 Z-trim(112.7): 60  B-trim: 7 in 1/53
 Lambda= 0.113080
 statistics sampled from 13404 (13460) to 13404 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.413), width:  16
 Scan time:  3.090

The best scores are:                                      opt bits E(32554)
CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18       ( 376) 2525 422.8 2.4e-118
CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20       ( 372) 1331 228.0   1e-59
CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16       ( 346) 1084 187.7 1.3e-47
CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16       ( 345) 1081 187.2 1.9e-47


>>CCDS12022.1 PARD6G gene_id:84552|Hs108|chr18            (376 aa)
 initn: 2525 init1: 2525 opt: 2525  Z-score: 2238.1  bits: 422.8 E(32554): 2.4e-118
Smith-Waterman score: 2525; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KE0 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRALGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRALGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGASV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 RVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIANS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 HNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDEDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDEDND
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 VVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRHSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRHSL
              310       320       330       340       350       360

              370      
pF1KE0 ALPPGGVEEHGPAVTL
       ::::::::::::::::
CCDS12 ALPPGGVEEHGPAVTL
              370      

>>CCDS33485.1 PARD6B gene_id:84612|Hs108|chr20            (372 aa)
 initn: 1306 init1: 802 opt: 1331  Z-score: 1185.4  bits: 228.0 E(32554): 1e-59
Smith-Waterman score: 1331; 64.2% identity (86.4% similar) in 316 aa overlap (1-314:1-309)

               10         20        30        40        50         
pF1KE0 MNRSFHKSQTLRFYDC-SAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSD
       :::: :.  .     : ...:::::::::::::::.: ::::::.:: :. :.:.: : :
CCDS33 MNRS-HRHGAGS--GCLGTMEVKSKFGAEFRRFSLERSKPGKFEEFYGLLQHVHKIPNVD
                10          20        30        40        50       

      60        70        80        90       100       110         
pF1KE0 VTIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLGAGSLCRRRRAL-
       : .::::.::::::::::::. ::::.::::::.::::.:::. ...:. .: ... .: 
CCDS33 VLVGYADIHGDLLPINNDDNYHKAVSTANPLLRIFIQKKEEADYSAFGTDTLIKKKNVLT
        60        70        80        90       100       110       

      120       130       140       150       160       170        
pF1KE0 GALRDEGPRRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA
       ..:: .. :.. :. :..:.::::::::::::..:::::::::...: :::::::::::.
CCDS33 NVLRPDNHRKKPHIVISMPQDFRPVSSIIDVDILPETHRRVRLYKYGTEKPLGFYIRDGS
       120       130       140       150       160       170       

      180       190       200       210       220       230        
pF1KE0 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA
       :::::::::::::::::::.::::::.:::::::::::::::::::.::.::::::::::
CCDS33 SVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIA
       180       190       200       210       220       230       

      240       250       260       270       280       290        
pF1KE0 NSHNLIVTVKPANQRNNVVRGGRALGSSGPPSDGTAGFVGPPAPRVLQNFHPDEAESDED
       ::.:::.::.::::::::::..:. ::::  .:..  ..: :  ..  .:.:.. .:.::
CCDS33 NSRNLIITVRPANQRNNVVRNSRTSGSSGQSTDNS--LLGYPQ-QIEPSFEPEDEDSEED
       240       250       260       270          280       290    

      300       310       320       330       340       350        
pF1KE0 NDVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADPRH
        :..:: .  : . :.                                            
CCDS33 -DIIIEDNGVPQQIPKAVPNTESLESLTQIELSFESGQNGFIPSNEVSLAAIASSSNTEF
           300       310       320       330       340       350   

>>CCDS10843.1 PARD6A gene_id:50855|Hs108|chr16            (346 aa)
 initn: 776 init1: 749 opt: 1084  Z-score: 968.1  bits: 187.7 E(32554): 1.3e-47
Smith-Waterman score: 1110; 59.6% identity (77.9% similar) in 312 aa overlap (17-323:14-307)

               10        20        30        40        50        60
pF1KE0 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
                       : ::::::: ::::::.: : . . :..: .:.  .:.: . ::
CCDS10    MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDV
                  10        20        30        40        50       

               70        80        90       100         110        
pF1KE0 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERGSLG--AGSLCRRRRAL
        .::.:.::::::..:::.. .:..:. : ::...::: ::. ..:.  ..:: ::...:
CCDS10 LLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKRAEADSSGLAFASNSLQRRKKGL
        60        70        80        90       100       110       

      120        130       140       150       160       170       
pF1KE0 GALRDEGP-RRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDG
         ::  .: : :  : :.::.::: :::.:::::.::::::::::.:: ..:::::::::
CCDS10 -LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDG
        120       130       140       150       160       170      

       180       190       200       210       220       230       
pF1KE0 ASVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMI
        ::::.:.:::.::::::::.: ::::::::::::.::.::::::::::::::::::::.
CCDS10 MSVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMV
        180       190       200       210       220       230      

       240       250       260        270       280       290      
pF1KE0 ANSHNLIVTVKPANQRNNVVRGGRALGS-SGPPSDGTAGFVGPPAPRVLQNFHPDEAESD
       ::::::::::::::::::::::  : :  .:::: :     ::  :           .::
CCDS10 ANSHNLIVTVKPANQRNNVVRG--ASGRLTGPPSAGP----GPAEP-----------DSD
        240       250         260       270                        

         300       310       320       330       340       350     
pF1KE0 EDN-DVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRAD
       .:. :.:::.   :.    . : :  .:                                
CCDS10 DDSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRG
     280       290       300       310       320       330         

>>CCDS45514.1 PARD6A gene_id:50855|Hs108|chr16            (345 aa)
 initn: 756 init1: 756 opt: 1081  Z-score: 965.4  bits: 187.2 E(32554): 1.9e-47
Smith-Waterman score: 1107; 59.5% identity (77.5% similar) in 311 aa overlap (17-323:14-306)

               10        20        30        40        50        60
pF1KE0 MNRSFHKSQTLRFYDCSAVEVKSKFGAEFRRFSLDRHKPGKFEDFYKLVVHTHHISNSDV
                       : ::::::: ::::::.: : . . :..: .:.  .:.: . ::
CCDS45    MARPQRTPARSPDSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDV
                  10        20        30        40        50       

               70        80        90       100        110         
pF1KE0 TIGYADVHGDLLPINNDDNFCKAVSSANPLLRVFIQKREEAERG-SLGAGSLCRRRRALG
        .::.:.::::::..:::.. .:..:. : ::...::::    : .....:: ::...: 
CCDS45 LLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQKREADSSGLAFASNSLQRRKKGL-
        60        70        80        90       100       110       

     120        130       140       150       160       170        
pF1KE0 ALRDEGP-RRRAHLDIGLPRDFRPVSSIIDVDLVPETHRRVRLHRHGCEKPLGFYIRDGA
        ::  .: : :  : :.::.::: :::.:::::.::::::::::.:: ..::::::::: 
CCDS45 LLRPVAPLRTRPPLLISLPQDFRQVSSVIDVDLLPETHRRVRLHKHGSDRPLGFYIRDGM
        120       130       140       150       160       170      

      180       190       200       210       220       230        
pF1KE0 SVRVTPHGLEKVPGIFISRMVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMIA
       ::::.:.:::.::::::::.: ::::::::::::.::.::::::::::::::::::::.:
CCDS45 SVRVAPQGLERVPGIFISRLVRGGLAESTGLLAVSDEILEVNGIEVAGKTLDQVTDMMVA
        180       190       200       210       220       230      

      240       250       260        270       280       290       
pF1KE0 NSHNLIVTVKPANQRNNVVRGGRALGS-SGPPSDGTAGFVGPPAPRVLQNFHPDEAESDE
       :::::::::::::::::::::  : :  .:::: :     ::  :           .::.
CCDS45 NSHNLIVTVKPANQRNNVVRG--ASGRLTGPPSAGP----GPAEP-----------DSDD
        240       250         260       270                        

        300       310       320       330       340       350      
pF1KE0 DN-DVVIEGTLEPARPPQTPGAPAGSLSRVNGAGLAQRLQRDLALDGGLQRLLSSLRADP
       :. :.:::.   :.    . : :  .:                                 
CCDS45 DSSDLVIENRQPPSSNGLSQGPPCWDLHPGCRHPGTRSSLPSLDDQEQASSGWGSRIRGD
     280       290       300       310       320       330         




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:54:01 2016 done: Sat Nov  5 17:54:02 2016
 Total Scan time:  3.090 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com