Result of FASTA (omim) for pF1KB6791
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6791, 127 aa
  1>>>pF1KB6791 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2238+/-0.000398; mu= 11.0073+/- 0.025
 mean_var=57.5808+/-11.231, 0's: 0 Z-trim(110.7): 26  B-trim: 165 in 2/52
 Lambda= 0.169019
 statistics sampled from 19088 (19111) to 19088 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.224), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(85289)
NP_001434 (OMIM: 134650) fatty acid-binding protei ( 127)  793 201.5 3.1e-52
NP_001436 (OMIM: 600422) gastrotropin isoform 2 [H ( 128)  337 90.3 9.2e-19
NP_001124430 (OMIM: 600422) gastrotropin isoform 1 ( 177)  337 90.3 1.2e-18
NP_001035532 (OMIM: 600422) gastrotropin isoform 1 ( 177)  337 90.3 1.2e-18
NP_001186652 (OMIM: 180231) cellular retinoic acid ( 138)  184 53.0 1.7e-07
XP_016855832 (OMIM: 180231) PREDICTED: cellular re ( 138)  184 53.0 1.7e-07
NP_001869 (OMIM: 180231) cellular retinoic acid-bi ( 138)  184 53.0 1.7e-07
NP_004369 (OMIM: 180230) cellular retinoic acid-bi ( 137)  166 48.6 3.5e-06
NP_001437 (OMIM: 602965) fatty acid-binding protei ( 132)  161 47.4 7.8e-06
NP_004155 (OMIM: 180280) retinol-binding protein 2 ( 134)  154 45.7 2.6e-05
NP_002890 (OMIM: 180260) retinol-binding protein 1 ( 197)  152 45.3 5.1e-05
NP_001305968 (OMIM: 602965) fatty acid-binding pro ( 166)  137 41.6 0.00055
NP_000125 (OMIM: 134640) fatty acid-binding protei ( 132)  135 41.0 0.00063
NP_002668 (OMIM: 170715) myelin P2 protein [Homo s ( 132)  133 40.6 0.00089
NP_004093 (OMIM: 134651) fatty acid-binding protei ( 133)  132 40.3  0.0011
XP_011539309 (OMIM: 134651) PREDICTED: fatty acid- ( 126)  127 39.1  0.0023
NP_001124465 (OMIM: 180260) retinol-binding protei ( 153)  123 38.1  0.0055
NP_001124464 (OMIM: 180260) retinol-binding protei ( 157)  123 38.1  0.0056
NP_443192 (OMIM: 608604) retinoid-binding protein  ( 134)  121 37.6  0.0068


>>NP_001434 (OMIM: 134650) fatty acid-binding protein, l  (127 aa)
 initn: 793 init1: 793 opt: 793  Z-score: 1058.9  bits: 201.5 E(85289): 3.1e-52
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB6 MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKVIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKVIQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 NEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMTLGDIVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMTLGDIVF
               70        80        90       100       110       120

              
pF1KB6 KRISKRI
       :::::::
NP_001 KRISKRI
              

>>NP_001436 (OMIM: 600422) gastrotropin isoform 2 [Homo   (128 aa)
 initn: 322 init1: 139 opt: 337  Z-score: 457.9  bits: 90.3 E(85289): 9.2e-19
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (1-127:1-127)

               10        20        30        40        50          
pF1KB6 MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTIT-AGSKVI
       :.:.::....:..:.. ::: .:.  ..:.:....: :.:. :.:. : ..   .:....
NP_001 MAFTGKFEMESEKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTM
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB6 QNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTELNGDIITNTMTLGDIV
        :.::::.: ...:: :.  :..::.:: .:::..: : ....:. :: .... :.: ..
NP_001 TNKFTVGKESNIQTMGGKTFKATVQMEG-GKLVVNFPNYHQTSEIVGDKLVEVSTIGGVT
               70        80         90       100       110         

     120        
pF1KB6 FKRISKRI 
       ..:.:::. 
NP_001 YERVSKRLA
     120        

>>NP_001124430 (OMIM: 600422) gastrotropin isoform 1 [Ho  (177 aa)
 initn: 322 init1: 139 opt: 337  Z-score: 455.6  bits: 90.3 E(85289): 1.2e-18
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (1-127:50-176)

                                             10        20        30
pF1KB6                               MSFSGKYQLQSQENFEAFMKAIGLPEELIQ
                                     :.:.::....:..:.. ::: .:.  ..:.
NP_001 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
      20        30        40        50        60        70         

               40        50         60        70        80         
pF1KB6 KGKDIKGVSEIVQNGKHFKFTIT-AGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDN
       :....: :.:. :.:. : ..   .:.... :.::::.: ...:: :.  :..::.:: .
NP_001 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG-G
      80        90       100       110       120       130         

      90       100       110       120        
pF1KB6 KLVTTFKNIKSVTELNGDIITNTMTLGDIVFKRISKRI 
       :::..: : ....:. :: .... :.: ....:.:::. 
NP_001 KLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
      140       150       160       170       

>>NP_001035532 (OMIM: 600422) gastrotropin isoform 1 [Ho  (177 aa)
 initn: 322 init1: 139 opt: 337  Z-score: 455.6  bits: 90.3 E(85289): 1.2e-18
Smith-Waterman score: 337; 36.7% identity (82.0% similar) in 128 aa overlap (1-127:50-176)

                                             10        20        30
pF1KB6                               MSFSGKYQLQSQENFEAFMKAIGLPEELIQ
                                     :.:.::....:..:.. ::: .:.  ..:.
NP_001 RAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKLLGISSDVIE
      20        30        40        50        60        70         

               40        50         60        70        80         
pF1KB6 KGKDIKGVSEIVQNGKHFKFTIT-AGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDN
       :....: :.:. :.:. : ..   .:.... :.::::.: ...:: :.  :..::.:: .
NP_001 KARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEG-G
      80        90       100       110       120       130         

      90       100       110       120        
pF1KB6 KLVTTFKNIKSVTELNGDIITNTMTLGDIVFKRISKRI 
       :::..: : ....:. :: .... :.: ....:.:::. 
NP_001 KLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA
      140       150       160       170       

>>NP_001186652 (OMIM: 180231) cellular retinoic acid-bin  (138 aa)
 initn: 175 init1:  82 opt: 184  Z-score: 255.7  bits: 53.0 E(85289): 1.7e-07
Smith-Waterman score: 187; 32.4% identity (60.3% similar) in 136 aa overlap (2-126:3-137)

                10        20          30        40        50       
pF1KB6  MSFSGKYQLQSQENFEAFMKAIGLPEEL--IQKGKDIKGVSEIVQNGKHFKFTITAGSK
         .:::....  .:::: ..:..:.   :  :  .   : . :: :.:  : .  ..  .
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
               10        20        30        40        50        60

        60        70        80        90       100                 
pF1KB6 VIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKS-------VTEL--NGDI
       . . .: :::: : .:. :.  :..:. :..::.:   : .:.       . ::  .:..
NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
               70        80        90       100       110       120

      110       120       
pF1KB6 ITNTMTLGDIVFKRISKRI
       :  :::  :.:  :.  : 
NP_001 IL-TMTADDVVCTRVYVRE
               130        

>>XP_016855832 (OMIM: 180231) PREDICTED: cellular retino  (138 aa)
 initn: 175 init1:  82 opt: 184  Z-score: 255.7  bits: 53.0 E(85289): 1.7e-07
Smith-Waterman score: 187; 32.4% identity (60.3% similar) in 136 aa overlap (2-126:3-137)

                10        20          30        40        50       
pF1KB6  MSFSGKYQLQSQENFEAFMKAIGLPEEL--IQKGKDIKGVSEIVQNGKHFKFTITAGSK
         .:::....  .:::: ..:..:.   :  :  .   : . :: :.:  : .  ..  .
XP_016 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
               10        20        30        40        50        60

        60        70        80        90       100                 
pF1KB6 VIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKS-------VTEL--NGDI
       . . .: :::: : .:. :.  :..:. :..::.:   : .:.       . ::  .:..
XP_016 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
               70        80        90       100       110       120

      110       120       
pF1KB6 ITNTMTLGDIVFKRISKRI
       :  :::  :.:  :.  : 
XP_016 IL-TMTADDVVCTRVYVRE
               130        

>>NP_001869 (OMIM: 180231) cellular retinoic acid-bindin  (138 aa)
 initn: 175 init1:  82 opt: 184  Z-score: 255.7  bits: 53.0 E(85289): 1.7e-07
Smith-Waterman score: 187; 32.4% identity (60.3% similar) in 136 aa overlap (2-126:3-137)

                10        20          30        40        50       
pF1KB6  MSFSGKYQLQSQENFEAFMKAIGLPEEL--IQKGKDIKGVSEIVQNGKHFKFTITAGSK
         .:::....  .:::: ..:..:.   :  :  .   : . :: :.:  : .  ..  .
NP_001 MPNFSGNWKIIRSENFEELLKVLGVNVMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVR
               10        20        30        40        50        60

        60        70        80        90       100                 
pF1KB6 VIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKS-------VTEL--NGDI
       . . .: :::: : .:. :.  :..:. :..::.:   : .:.       . ::  .:..
NP_001 TTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKLLKGEGPKTSWTRELTNDGEL
               70        80        90       100       110       120

      110       120       
pF1KB6 ITNTMTLGDIVFKRISKRI
       :  :::  :.:  :.  : 
NP_001 IL-TMTADDVVCTRVYVRE
               130        

>>NP_004369 (OMIM: 180230) cellular retinoic acid-bindin  (137 aa)
 initn: 112 init1:  67 opt: 166  Z-score: 232.0  bits: 48.6 E(85289): 3.5e-06
Smith-Waterman score: 166; 28.4% identity (58.2% similar) in 134 aa overlap (2-126:3-136)

                10        20          30        40        50       
pF1KB6  MSFSGKYQLQSQENFEAFMKAIGLPEEL--IQKGKDIKGVSEIVQNGKHFKFTITAGSK
         .:.: ....:.:::. ..::.:.   :  .  .   :   :: :.: .: .  ..  .
NP_004 MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
               10        20        30        40        50        60

        60        70        80        90       100              110
pF1KB6 VIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFKNIKS-------VTELNGDIIT
       . . .: :::  : ::. :.: ....  :..::.  :   ...       . :: .: . 
NP_004 TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELI
               70        80        90       100       110       120

              120       
pF1KB6 NTMTLGDIVFKRISKRI
        :.   :.:  ::  : 
NP_004 LTFGADDVVCTRIYVRE
              130       

>>NP_001437 (OMIM: 602965) fatty acid-binding protein, b  (132 aa)
 initn: 133 init1: 133 opt: 161  Z-score: 225.7  bits: 47.4 E(85289): 7.8e-06
Smith-Waterman score: 161; 30.4% identity (57.6% similar) in 125 aa overlap (2-122:4-127)

                 10        20        30        40        50        
pF1KB6   MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKV
          .: . ..: ...::. .:::.:.     : :.  : .  : :.: .  .   .  : 
NP_001 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKN
               10        20        30        40        50        60

       60        70        80        90           100       110    
pF1KB6 IQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTTFK----NIKSVTELNGDIITNTMT
        .  : .::: .  :   .. :.::.:.:: :::   :    . . : :..   .. :.:
NP_001 TEISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKWDGKETNFVREIKDGKMVMTLT
               70        80        90        100       110         

          120       
pF1KB6 LGDIVFKRISKRI
       .::.:  :     
NP_001 FGDVVAVRHYEKA
     120       130  

>>NP_004155 (OMIM: 180280) retinol-binding protein 2 [Ho  (134 aa)
 initn: 145 init1:  88 opt: 154  Z-score: 216.4  bits: 45.7 E(85289): 2.6e-05
Smith-Waterman score: 154; 28.7% identity (59.7% similar) in 129 aa overlap (4-126:6-133)

                 10        20        30        40        50        
pF1KB6   MSFSGKYQLQSQENFEAFMKAIGLPEELIQKGKDIKGVSEIVQNGKHFKFTITAGSKV
            .: ....:.::::..:::. .     . .  .  .. : :.: .::   :.  . 
NP_004 MTRDQNGTWEMESNENFEGYMKALDIDFATRKIAVRLTQTKVIDQDGDNFKTKTTSTFRN
               10        20        30        40        50        60

       60        70          80        90       100           110  
pF1KB6 IQNEFTVGEECE--LETMTGEKVKTVVQLEGDNKLVTTFKNIKSVTE----LNGDIITNT
        . .:::: : .   ... ...::..:  :::  :: . :. :        ..:: .   
NP_004 YDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDV-LVCVQKGEKENRGWKQWIEGDKLYLE
               70        80        90        100       110         

            120       
pF1KB6 MTLGDIVFKRISKRI
       .: :: : ... :. 
NP_004 LTCGDQVCRQVFKKK
     120       130    




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:37:35 2016 done: Sat Nov  5 17:37:36 2016
 Total Scan time:  4.200 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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