FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0970, 431 aa
  1>>>pF1KB0970 431 - 431 aa - 431 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6325+/-0.00095; mu= 2.3577+/- 0.057
 mean_var=162.0393+/-32.068, 0's: 0 Z-trim(110.3): 21  B-trim: 0 in 0/51
 Lambda= 0.100754
 statistics sampled from 11488 (11499) to 11488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.353), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS8648.1 MANSC1 gene_id:54682|Hs108|chr12        ( 431) 2793 417.9 9.8e-117


>>CCDS8648.1 MANSC1 gene_id:54682|Hs108|chr12             (431 aa)
 initn: 2793 init1: 2793 opt: 2793  Z-score: 2209.2  bits: 417.9 E(32554): 9.8e-117
Smith-Waterman score: 2793; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB0 MFFGGEGSLTYTLVIICFLTLRLSASQNCLKKSLEDVVIDIQSSLSKGIRGNEPVYTSTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MFFGGEGSLTYTLVIICFLTLRLSASQNCLKKSLEDVVIDIQSSLSKGIRGNEPVYTSTQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 EDCINSCCSTKNISGDKACNLMIFDTRKTARQPNCYLFFCPNEEACPLKPAKGLMSYRII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 EDCINSCCSTKNISGDKACNLMIFDTRKTARQPNCYLFFCPNEEACPLKPAKGLMSYRII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 TDFPSLTRNLPSQELPQEDSLLHGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQKFGSSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 TDFPSLTRNLPSQELPQEDSLLHGQFSQAVTPLAHHHTDYSKPTDISWRDTLSQKFGSSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 HLEKLFKMDEASAQLLAYKEKGHSQSSQFSSDQEIAHLLPENVSALPATVAVASPHTTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 HLEKLFKMDEASAQLLAYKEKGHSQSSQFSSDQEIAHLLPENVSALPATVAVASPHTTSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 TPKPATLLPTNASVTPSGTSQPQLATTAPPVTTVTSQPPTTLISTVFTRAAATLQAMATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 TPKPATLLPTNASVTPSGTSQPQLATTAPPVTTVTSQPPTTLISTVFTRAAATLQAMATT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 AVLTTTFQAPTDSKGSLETIPFTEISNLTLNTGNVYNPTALSMSNVESSTMNKTASWEGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 AVLTTTFQAPTDSKGSLETIPFTEISNLTLNTGNVYNPTALSMSNVESSTMNKTASWEGR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EASPGSSSQGSVPENQYGLPFEKWLLIGSLLFGVLFLVIGLVLLGRILSESLRRKRYSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 EASPGSSSQGSVPENQYGLPFEKWLLIGSLLFGVLFLVIGLVLLGRILSESLRRKRYSRL
              370       380       390       400       410       420

              430 
pF1KB0 DYLINGIYVDI
       :::::::::::
CCDS86 DYLINGIYVDI
              430 




431 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:33:55 2016 done: Sat Nov  5 17:33:56 2016
 Total Scan time:  3.380 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]