GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:28:27

Sequence gi568815583f:48778177_48978737 : 200561 bp : 39.84% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.13 PlyA -    387    382    6                               1.05
 1.12 Term -   1898   1692  207  2  0   48   39   123 0.475  -0.24
 1.11 Intr -   3183   3049  135  0  0   62   42    96 0.405   2.24
 1.10 Intr -   4054   3963   92  2  2  113   89    87 0.878  10.09
 1.09 Intr -   5944   5797  148  1  1  104   94    86 0.998   9.69
 1.08 Intr -  10825  10625  201  1  0   46   47   280 0.974  18.26
 1.07 Intr -  13200  13061  140  1  2   40   82   166 0.937  10.46
 1.06 Intr -  15285  15145  141  1  0   65  116   132 0.968  13.10
 1.05 Intr -  17984  17834  151  2  1   60   39   109 0.966   2.01
 1.04 Intr -  19403  19125  279  2  0   76   72   247 0.939  18.65
 1.03 Intr -  25951  25838  114  1  0   76   81    72 0.571   5.02
 1.02 Intr -  27480  27387   94  2  1   87  107   148 0.025  15.65
 1.01 Init -  39611  39427  185  2  2   58   76    78 0.021   2.24
 1.00 Prom -  40057  40018   40                              -4.15

 2.00 Prom +  40514  40553   40                              -3.55
 2.01 Init +  61263  61473  211  2  1   62   82   117 0.722   7.49
 2.02 Term +  61901  61968   68  0  2   97   54    87 0.986   3.32
 2.03 PlyA +  62029  62034    6                               1.05

 3.10 PlyA -  62444  62439    6                               1.05
 3.09 Term -  64927  64884   44  2  2  142   50    53 0.956   3.24
 3.08 Intr -  65412  65233  180  1  0   57  100    97 0.942   6.72
 3.07 Intr -  68809  68726   84  2  0   96   53   116 0.922   7.77
 3.06 Intr -  73636  73504  133  1  1   67   76   114 0.888   7.40
 3.05 Intr -  77948  77777  172  1  1   97   76   148 0.998  13.52
 3.04 Intr -  79639  79516  124  2  1   91   82    55 0.838   3.92
 3.03 Intr -  83398  83201  198  2  0   99   69    29 0.155   0.50
 3.02 Intr -  89693  89642   52  2  1   87   64    64 0.244   1.46
 3.01 Init -  91727  91674   54  2  0   79   85    23 0.367   2.45
 3.00 Prom -  91769  91730   40                              -4.35

 4.00 Prom +  98264  98303   40                              -6.55
 4.01 Sngl + 100001 100564  564  1  0   69   33   900 0.881  78.49
 4.02 PlyA + 101436 101441    6                               1.05

 5.00 Prom + 109283 109322   40                              -2.35
 5.01 Init + 117722 117724    3  1  0   99  101     0 0.507   2.45
 5.02 Intr + 128354 128419   66  1  0   95   65    61 0.001   2.68
 5.03 Intr + 134695 134815  121  0  1   77   23    69 0.000  -1.55
 5.04 Intr + 135556 135657  102  2  0   86  103    47 0.001   5.23
 5.05 Intr + 144018 144148  131  1  2   67    3   111 0.002  -0.01
 5.06 Intr + 149063 149203  141  1  0  104   90    46 0.692   6.03
 5.07 Intr + 152224 152298   75  0  0   75  111    49 0.502   4.69
 5.08 Intr + 161042 161221  180  1  0   34   94   120 0.251   6.34
 5.09 Term + 166131 166187   57  2  0   88   54    27 0.023  -3.99
 5.10 PlyA + 167358 167363    6                               1.05

 6.06 PlyA - 168589 168584    6                               1.05
 6.05 Term - 175424 175321  104  0  2   80   43   104 0.881   2.56
 6.04 Intr - 177870 177790   81  1  0  136   70    38 0.929   5.49
 6.03 Intr - 178570 178495   76  1  1   47   92    64 0.886   0.87
 6.02 Intr - 184889 184255  635  0  2   76  110   365 0.967  28.42
 6.01 Init - 185197 185143   55  1  1   59   52   118 0.807   4.80
 6.00 Prom - 190053 190014   40                              -5.05

 7.00 Prom + 190402 190441   40                              -5.55
 7.01 Init + 193834 194505  672  0  0   69   38  1011 0.820  87.43
 7.02 Term + 194569 194853  285  0  0  -33   48   393 0.959  17.62
 7.03 PlyA + 195396 195401    6                               1.05

 8.02 PlyA - 197038 197033    6                              -0.45
 8.01 Term - 198422 198277  146  0  2   95   43   155 0.532   8.79

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  27473  27387   87  2  0   66  107   149 0.971  15.29
S.002 Sngl -  54899  54639  261  2  0  108   47   149 0.929   7.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_1|628_aa
MANKDVVGDIASALSRPPGVPQSTSVYPILGFCVFCFCVTVHSENRCRLVKLLWVTKNQN
GLRTMSLDFGSVALPVQNEDEEYDEEDYEREKELATVPTSHTDMGLCTQTCLLHSGKFSA
RALRAFEFMTLGYNEIQSLYAGEKCGNVWEENRSKTEDRHPVYHPEEGGDEGGSGYSPPS
KCEQTDLYHLPENFRPYTNGQKQEFNNQATNVIKFSDPQWNHFQGPSCQGLEPYNKVTYK
PYQSSAQNNGSPAQEITGSDTFEGLQQQFLGANENSAENMQIIQLQVLNKAKERQLENLI
EKLNESERQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQ
ALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESIVMGLTKKYEEQVLS
LQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINKLTRSLEESQKQCAH
LLQSGSVQEVAQLQFQLQQAQKAHAMSANMNKALQEELTELKDEISLYESAAKLGIHPSD
SEGELNIELTESYVDLGIKKRARARVGKDSIHPSASSSALARRKLWKPNRLELLSITANS
STHLRVFDPHQNVHSYDPKLSKKGFQFG

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_1|1887_bp
atggcaaacaaggatgttgtaggagatatagccagtgctttgtccagaccccctggagtc
cctcaaagcacttctgtctaccccatccttggcttctgtgtgttttgcttctgtgtcact
gttcattctgagaacagatgcaggctagtgaagctgctttgggtcaccaagaaccagaac
ggcctgaggaccatgtcattagactttggcagtgtggcactaccagtgcaaaatgaagat
gaagagtatgacgaagaggactatgaaagagagaaagagctggccacagtccccacttct
cacacagacatgggcttatgcactcagacctgcctgcttcactctggtaaattctctgcc
agggccctgagggcatttgagtttatgaccctgggctataatgaaattcagagtttatat
gctggagaaaaatgtggtaatgtctgggaagaaaatagaagtaaaactgaagaccgacat
cctgtgtaccatcctgaagaaggtggagatgaaggtggaagtggttatagtcctccaagt
aaatgtgaacagactgatttatatcaccttcctgaaaactttaggccatataccaatggt
cagaagcaggaatttaataaccaagcaaccaatgtaattaaattttcagatcctcaatgg
aaccattttcagggtcccagttgtcaaggtttggaaccgtataataaagtgacatataaa
ccttatcagtcttctgcccagaataatggctcaccagcccaggagataacaggaagtgac
acattcgaaggcctgcaacaacaatttttaggagctaatgagaactctgcagaaaatatg
cagattattcaacttcaggttcttaacaaagcaaaagagagacaactggagaacttaatt
gaaaagttaaatgaaagtgaacgtcaaattcgatatctgaatcaccagcttgtaataata
aaagatgaaaaggatggtttgactctcagccttcgagaatcacagaaactctttcagaat
ggaaaagaaagagagatacagcttgaagctcaaataaaagcactggagactcagatacaa
gcattaaaagtcaatgaagaacagatgatcaagaagtccagaacaactgaaatggctctg
gaaagcttgaagcagcagctggtggaccttcatcattctgaatcacttcaacgagctaga
gaacagcatgagagcattgttatgggcctcacaaagaagtacgaagagcaagtattgtcc
ttacaaaagaatttggatgccacagtcaccgcacttaaagaacaggaagacatttgctct
cgtctgaaagatcacgtgaaacaactggaaaggaatcaagaagcaatcaagttagaaaag
actgagatcattaataagttgacaagaagtctagaggagagtcaaaagcagtgtgcccac
ttgttgcagtccgggtcagtacaagaggtggctcagctacagttccagctgcagcaagca
cagaaggcacatgctatgagtgcaaacatgaacaaggctttgcaagaagaattaacagaa
ctaaaagatgaaatttctctctatgaatctgctgcaaaactaggaatacatccaagtgac
tcagaaggagaattaaatatagaactcactgaatcgtatgtggatttgggtattaaaaag
agggctagggcaagggttgggaaagacagtatccatccttcggccagcagctcagcctta
gcaaggagaaaactatggaaacccaacaggctagagttgctgagtatcacagcaaatagc
tctacacatttacgtgtgtttgatccacatcaaaatgtccacagttatgatcccaagttg
tcaaagaaaggcttccagtttggttag

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_2|92_aa
MVGTTQMASSGSTDDSGHQKSFPKAEPGSKQIAFSTSSSCSLHNSSLARFGHRCGPVTAV
PHCCIPPFCESECKCDDEGPSSHFGPEMETRC

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_2|279_bp
atggtaggaacaacccagatggcatcatctggatccacagatgacagtggacaccaaaag
tcctttcctaaagctgaaccaggatccaagcaaattgctttctccacttccagctcatgt
agtcttcacaactctagcctggccagatttggtcatcgttgtggaccagtgactgctgtc
ccacactgttgcattcctcccttttgtgaatctgaatgcaaatgtgatgatgagggccca
agcagccactttggaccagagatggaaaccagatgttga

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_3|346_aa
MGKFVPAALRAPLCSLKLDTTDYVAYVAKDPVNQRAENWAILGQAFGIGFNPGKWAYLYV
IQGPPLSCPMTNLKKTISIEQHSMSMRGNNGTVKVHVLPEGACHILECHNGMAQDVISTI
GQAFELRFKQYLKNPSLNTSCESEEVHIDSHAEEREDHEYYNEIPGKQPPVGGVSDMRIK
VQATEQMAYCPIQCEKLCYLCCQTNLSKDTVHLKGIKWIPPPQYIADESCMYRDDRSSLD
KIFKVLYCALKGGSFQERLDINTDVFGVILRDGNVHPRGVQSQRDTSLLKHTCRVDLFDD
PCYINTQALQSTPGSAGNQRSAQPLGSPWHCGRQQSLDLGGDEMIV

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_3|1041_bp
atgggaaagtttgtacctgctgcattgagagcacctctgtgctctctaaagctggatact
acagactatgttgcctacgtagctaaagatccagttaatcaacgagctgaaaattgggca
attcttggccaagcttttggaattggttttaatcctgggaaatgggcatatttatatgtg
attcaaggcccacctctatcctgtcccatgaccaacctaaaaaagaccatttccatagag
caacatagcatgtctatgagaggcaacaatggaactgtgaaagtacatgtgctccctgaa
ggtgcctgtcacatattggaatgccacaatggaatggcccaagacgtcataagtaccata
gggcaggcttttgaactccggtttaaacagtacttgaaaaatccttctttgaatacttct
tgtgaaagtgaggaggtgcatattgatagccatgccgaggagagagaagatcatgaatat
tacaatgaaattccagggaagcagccaccagtaggtggtgtttcagatatgcggatcaaa
gttcaagccacggaacaaatggcttactgccccatacagtgtgaaaagttgtgctatttg
tgctgccaaactaatctttctaaagacactgttcatctcaaaggcatcaagtggatccct
cccccacagtatattgctgacgagagttgtatgtacagggatgatcgaagttctttggat
aagattttcaaggtactctattgtgcgcttaaaggtggcagttttcaagagaggctagat
ataaacaccgatgtttttggtgtcatcctacgggatggtaatgtccatccaagaggggtg
cagtcccagcgagatacctcattattgaagcacacgtgccgagtggatctctttgatgac
ccctgctacattaatacacaggctcttcaaagtacacctggctctgctggaaatcaaagg
tcagcccaaccactggggagcccatggcactgcggaagacaacagtcactggatttagga
ggagatgaaatgattgtatga

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_4|187_aa
MSEMAELSELYEESSDLQMDVMPGEGDLPQMEVGSGSRELSLRPSRSGAQQLEEEGPMEE
EEAQPMAAPEGKRSLANGPNAGEQPGQVAGADFESEDEGEEFDDWEDDYDYPEEEQLSGA
GYRVSAALEEADKMFLRTREPALDGGFQMHYEKTPFDQLAFIEELFSLMVVNRLTEELGC
DEIIDRE

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_4|564_bp
atgtcggaaatggctgagttgtccgagctgtatgaagagagcagtgacctgcagatggat
gtgatgcctggcgagggtgaccttccgcagatggaggtaggcagcgggagccgggagcta
tccctgcgtccctcccgcagcggggcccaacagctcgaggaggaaggcccaatggaggag
gaggaggcccagccaatggcggcgccagaggggaaacggagccttgctaacgggcccaac
gctggggagcagccaggccaggtggcgggcgcagacttcgagagcgaggacgagggcgag
gaatttgatgactgggaggacgactacgactatcccgaagaggagcagctcagtggtgcc
ggctacagagtatcagccgctcttgaagaagccgacaagatgtttctgagaacaagagaa
ccagccctggatggcgggtttcagatgcattatgagaagaccccgtttgatcagttagct
tttatcgaagagcttttttcactgatggttgtcaatcgtctgaccgaagaactcggctgt
gatgagattattgatagagagtag

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_5|291_aa
MDYHGTTILPQYSAVLVKDVWSRPPSESTWLWAGSGGRLHRVLRCELSMGLSAVDTSACS
SGGGRNDLLGGPASSQGLSTASSTLGFRSALQIDSAPVCFPSNSVNSMRVEALSYSLEQF
QELYGYSINIRVKKKESMNEWRPLPPQSLGLASLYPAVLALERVDSPHRLESRPGSPPIP
PGGLVGEENIPASWLGVWENIFQEKFKAQALHLECDEHWDARGYGSVSERLQTSLRESGK
KGQRKDAGASYEGQAMRGDGGGISRQWAQHVQEIPKLPFLSFPGSQEPKEM

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_5|876_bp
atggattaccatggaactaccatattgccacaatacagtgctgtcctggttaaagatgtc
tggtccaggccacccagtgagtctacctggctctgggctggttctgggggtcgtctgcac
agagtcctgcgatgtgaactgtctatgggtctctcagctgtggataccagtgcctgttcc
agtggagggggcaggaatgacctgctagggggcccagcgagctcccagggcctttctact
gcttcctctacccttggatttcgttcagctctccaaattgactcagctccagtctgtttc
cccagcaacagtgtaaattccatgagggtagaggctttgtcttattcacttgaacagttt
caggaactttatggatactccataaacattcgagtgaaaaagaaagaatcaatgaatgaa
tggcgccctcttccaccccagagcctaggtcttgcgtccctatatcctgcagtcctggct
ctggaaagagtggactccccacacaggctggagagcaggcctggatcccctccaataccc
ccaggaggtcttgttggtgaggagaatatacctgcatcttggctaggagtatgggagaat
atttttcaagagaagtttaaggcacaggccctgcacttggagtgtgatgagcactgggat
gcaaggggctatgggagtgtgtcagagaggctccagaccagcctcagggaatcagggaag
aagggtcagaggaaggacgctggggcgagttatgaagggcaggcaatgagaggtgatggt
ggaggaatttccagacaatgggcacagcatgtgcaagagatccccaaactgccatttctc
agcttccctggaagccaggagcccaaggagatgtga

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_6|316_aa
MQRAPRPALARVLRLRVGHDEAIYATVSCFSTAKAMRERGQDSLAGLVLYVGLFGHPGML
HRAKYSRFRNESITSLDEGSSGGSVGNKGSPQPPHPALAPHLPTEDATLPSQESPTPLCT
LIPRMASMKLANPATLLSLKNFCLGTKEVPRLKLQESRDPGSSGPSSPETSLSRSGTAPP
PQQDLVGHRATALTPDSCPLPGPGEPTLRSRQDRHFLQHLLGMGMNYCVRHPLTNTELAS
PVRQKGGCYTGMGGGNLHISLDWSSPFMPLDTRALTARVLEIRSLHQLPHNDPVEWVDGE
ETDTKRGPLSGLDAYK

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_6|951_bp
atgcagcgggccccccgaccggcgctcgcccgggttctgcgcctaagagttggccacgac
gaggcgatttatgcaacagtatcctgtttcagcactgccaaggctatgcgagaacgcggc
caggacagcctggcaggactcgtgctgtatgtaggactcttcgggcaccccgggatgctg
cacagggccaagtacagccgctttcggaacgagtcgatcacgtccttggacgaaggtagc
tccggaggctcggtcgggaacaagggctcgccgcagcctccccaccccgccctggcacct
cacctgccgactgaagatgccaccttgccgtcgcaggagagccccaccccactgtgcacc
ttgatcccccgcatggcaagcatgaagctggccaacccggccactttgctgagtctgaaa
aacttttgcctgggtaccaaagaggtgcctcggctgaagctccaggaaagccgggaccca
ggttccagcggcccctcttccccagaaaccagtttaagtaggtccgggactgcacctcca
ccgcagcaggacctggtgggacacagggcaaccgccctaacccctgattcgtgcccgctt
cctggccctggggagccaacacttaggagcaggcaggacaggcactttctacagcacctg
ttggggatgggcatgaactactgtgtgaggcaccctcttactaacactgagctggcttca
ccagtaaggcagaaaggagggtgttatactggcatgggtggaggcaaccttcacatatcc
cttgattggtccagtcctttcatgcccctggacactagagccttaactgcaagagtctta
gagatcagaagcttgcatcaattacctcacaatgaccctgtggagtgggtagatggagag
gaaactgacaccaagagaggcccattgtctggccttgatgcttataagtag

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_7|318_aa
MSWAPAWVCVEAMRGQRMGGITAVTVNQNVLSPLNLEVDPNMQGMHTQEKEQVKTLNKSA
SFVDKVLFLEQQNKMLETNWSLLQQQKPAQSNMDNMFESYINNLLGQLEILGQEKLKLEA
ELGNMQGLCMFFVKEDFKKKYEDEINKPTEMENEFVLIKKDVDDAYMNKVELEFRLEGLT
DEINFLRQLYEEEIPELQSQILDTSVVLSMDNSRSLDMDSIIAEIKYEELQTLAGKHWDD
RRLTKTKISEMNRNISRLQAEIEGLPQRPEQRASLESVIADAEQRGELAIKDAKTKLSEL
EAAQQRAKQDMAHGTAAA

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_7|957_bp
atgtcctgggcaccagcatgggtctgtgtggaggctatgcggggccagcgtatgggaggc
atcacagccgtcacagtcaaccagaacgtgctgagcccccttaacctggaagtggacccc
aacatgcagggcatgcacacccaggagaaagagcaggtcaagaccctcaacaagtctgcc
tccttcgttgacaaggtactgttcctggaacagcagaacaagatgctggagaccaactgg
agcctcctgcagcagcagaagccggctcagagcaacatggacaacatgttcgagagctac
atcaacaaccttctggggcagctagagatcctgggccaggagaagctgaaactggaggca
gagcttggcaacatgcaggggctctgcatgtttttcgtgaaggaggacttcaagaaaaag
tacgaggacgagatcaataagcctacagagatggagaatgaatttgtcctcatcaagaag
gatgtggatgacgcttacatgaacaaggtagagctagagtttcgcctggaggggctgact
gacgagatcaacttcctcaggcagctgtatgaagaggagatcccagagctgcagtcccag
atcttggacacatctgtggtgctgtccatggacaacagccgctccctggacatggacagc
atcatcgcggagatcaagtatgaggagctgcagacactggctgggaagcactgggatgac
cggcgtcttacaaagacgaagatttctgagatgaaccggaacatcagccggctccaggct
gagattgagggcctgcctcaaaggccagagcagagagcttccctggagtccgtcatcgca
gatgctgagcagcggggggagctggccattaaggacgccaagactaagctgtccgagctg
gaggccgcccagcagcgggccaagcaggacatggcacatggcacggcagctgcctga

>gi568815583f:48778177_48978737|GENSCAN_predicted_peptide_8|48_aa
XQVRIAVQHVCIGAFRTAGSSNLYWRPPARRSWPEDSALDRNTDRCPS

>gi568815583f:48778177_48978737|GENSCAN_predicted_CDS_8|147_bp
nggcaagttcgcattgctgtacaacacgtgtgcataggcgccttccggacggctggctcc
agtaatttgtactggcgtccccctgctcgtaggtcctggccagaggactcagctctcgat
agaaacactgaccgctgtcccagctag