Result of FASTA (ccds) for pF1KB6633
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6633, 417 aa
  1>>>pF1KB6633 417 - 417 aa - 417 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0859+/-0.000775; mu= 10.4147+/- 0.047
 mean_var=129.4673+/-26.100, 0's: 0 Z-trim(113.4): 12  B-trim: 487 in 1/53
 Lambda= 0.112718
 statistics sampled from 13991 (14000) to 13991 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.43), width:  16
 Scan time:  2.460

The best scores are:                                      opt bits E(32554)
CCDS4129.1 LOX gene_id:4015|Hs108|chr5             ( 417) 2970 493.8 1.3e-139
CCDS10253.1 LOXL1 gene_id:4016|Hs108|chr15         ( 574) 1211 207.8 2.1e-53
CCDS74527.1 LOXL3 gene_id:84695|Hs108|chr2         ( 608)  775 137.0 4.9e-32
CCDS1953.1 LOXL3 gene_id:84695|Hs108|chr2          ( 753)  775 137.0 5.8e-32
CCDS7473.1 LOXL4 gene_id:84171|Hs108|chr10         ( 756)  765 135.4 1.8e-31
CCDS34864.1 LOXL2 gene_id:4017|Hs108|chr8          ( 774)  761 134.7 2.9e-31


>>CCDS4129.1 LOX gene_id:4015|Hs108|chr5                  (417 aa)
 initn: 2970 init1: 2970 opt: 2970  Z-score: 2620.1  bits: 493.8 E(32554): 1.3e-139
Smith-Waterman score: 2970; 100.0% identity (100.0% similar) in 417 aa overlap (1-417:1-417)

               10        20        30        40        50        60
pF1KB6 MRFAWTVLLLGPLQLCALVHCAPPAAGQQQPPREPPAAPGAWRQQIQWENNGQVFSLLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MRFAWTVLLLGPLQLCALVHCAPPAAGQQQPPREPPAAPGAWRQQIQWENNGQVFSLLSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GSQYQPQRRRDPGAAVPGAANASAQQPRTPILLIRDNRTAAARTRTAGSSGVTAGRPRPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSQYQPQRRRDPGAAVPGAANASAQQPRTPILLIRDNRTAAARTRTAGSSGVTAGRPRPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 ARHWFQAGYSTSRAREAGASRAENQTAPGEVPALSNLRPPSRVDGMVGDDPYNPYKYSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ARHWFQAGYSTSRAREAGASRAENQTAPGEVPALSNLRPPSRVDGMVGDDPYNPYKYSDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 NPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQASTYVQKMSMYNLRCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQASTYVQKMSMYNLRCAA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 EENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRYSWEWHSCHQHYHSMDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRYSWEWHSCHQHYHSMDE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 FSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHTQGLSPGCYDTYGADID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHTQGLSPGCYDTYGADID
              310       320       330       340       350       360

              370       380       390       400       410       
pF1KB6 CQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGCTISPY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGCTISPY
              370       380       390       400       410       

>>CCDS10253.1 LOXL1 gene_id:4016|Hs108|chr15              (574 aa)
 initn: 1374 init1: 1168 opt: 1211  Z-score: 1072.2  bits: 207.8 E(32554): 2.1e-53
Smith-Waterman score: 1211; 64.4% identity (80.7% similar) in 270 aa overlap (149-414:308-571)

      120       130       140       150       160         170      
pF1KB6 PTARHWFQAGYSTSRAREAGASRAENQTAPGEVPALSNLRPPSRVDG--MVGDDPYNPYK
                                     :  :  .:  :: .. :   . . :: : .
CCDS10 LYSEGTPGFEQAYPDPGPEAAQAHGGDPRLGWYPPYAN--PPPEAYGPPRALEPPYLPVR
       280       290       300       310         320       330     

        180       190         200       210       220       230    
pF1KB6 YSDDNPYYNYYDTYERPR--PGGRYRPGYGTGYFQYGLPDLVADPYYIQASTYVQKMSMY
        ::  :  .  .  .. :   :. :::. .      :::::: :: :.:::::::.  .:
CCDS10 SSDTPPPGGERNGAQQGRLSVGSVYRPNQNG----RGLPDLVPDPNYVQASTYVQRAHLY
         340       350       360           370       380       390 

          240       250       260       270       280       290    
pF1KB6 NLRCAAEENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRYSWEWHSCHQH
       .:::::::.:::::::  .. ::: :::::::::::::::.::::.:::..:::::::::
CCDS10 SLRCAAEEKCLASTAYAPEATDYDVRVLLRFPQRVKNQGTADFLPNRPRHTWEWHSCHQH
             400       410       420       430       440       450 

          300       310       320       330       340       350    
pF1KB6 YHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAHTQGLSPGCYDT
       ::::::::::::::: : ..:::::::::::::..::.:  .:.:::.::::::::::::
CCDS10 YHSMDEFSHYDLLDAATGKKVAEGHKASFCLEDSTCDFGNLKRYACTSHTQGLSPGCYDT
             460       470       480       490       500       510 

          360       370       380       390       400       410    
pF1KB6 YGADIDCQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYTGHHAYASGCTI
       :.:::::::::::::.:::::::: :::.:.: :::.:::::::.:.:::... :..: :
CCDS10 YNADIDCQWIDITDVQPGNYILKVHVNPKYIVLESDFTNNVVRCNIHYTGRYVSATNCKI
             520       530       540       550       560       570 

          
pF1KB6 SPY
          
CCDS10 VQS
          

>>CCDS74527.1 LOXL3 gene_id:84695|Hs108|chr2              (608 aa)
 initn: 725 init1: 528 opt: 775  Z-score: 688.6  bits: 137.0 E(32554): 4.9e-32
Smith-Waterman score: 775; 49.5% identity (68.9% similar) in 222 aa overlap (194-414:368-584)

           170       180       190       200       210       220   
pF1KB6 DGMVGDDPYNPYKYSDDNPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQ
                                     : : :.  :      .    ::.     .:
CCDS74 TEVVMSGVRCTGTELSLDQCAHHGTHITCKRTGTRFTAGV---ICSETASDLLLHSALVQ
       340       350       360       370          380       390    

           230       240       250       260       270       280   
pF1KB6 ASTYVQKMSMYNLRCAAEENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPR
        ..:..   .. : ::::::::::.:  :.   : :: :::: ....: : .:: :.  :
CCDS74 ETAYIEDRPLHMLYCAAEENCLASSARSANW-PYGHRRLLRFSSQIHNLGRADFRPKAGR
          400       410       420        430       440       450   

           290       300       310       320       330       340   
pF1KB6 YSWEWHSCHQHYHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAH
       .:: :: :: :::::: :.:::.:  :  . :::::::::::::: :.    .:. :.  
CCDS74 HSWVWHECHGHYHSMDIFTHYDILTPNGTK-VAEGHKASFCLEDTECQEDVSKRYECANF
           460       470       480        490       500       510  

            350       360       370       380       390       400  
pF1KB6 -TQGLSPGCYDTYGADIDCQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRY
         ::.. ::.: :  :::::::::::::::::::.: .::.. : :::.:::...:. .:
CCDS74 GEQGITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVINPNFEVAESDFTNNAMKCNCKY
            520       530       540       550       560       570  

            410                            
pF1KB6 TGHHAYASGCTISPY                     
        ::. .. .: :                        
CCDS74 DGHRIWVHNCHIGDAFSEEANRRFERYPGQTSNQII
            580       590       600        

>>CCDS1953.1 LOXL3 gene_id:84695|Hs108|chr2               (753 aa)
 initn: 725 init1: 528 opt: 775  Z-score: 687.3  bits: 137.0 E(32554): 5.8e-32
Smith-Waterman score: 775; 49.5% identity (68.9% similar) in 222 aa overlap (194-414:513-729)

           170       180       190       200       210       220   
pF1KB6 DGMVGDDPYNPYKYSDDNPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQ
                                     : : :.  :      .    ::.     .:
CCDS19 TEVVMSGVRCTGTELSLDQCAHHGTHITCKRTGTRFTAGV---ICSETASDLLLHSALVQ
            490       500       510       520          530         

           230       240       250       260       270       280   
pF1KB6 ASTYVQKMSMYNLRCAAEENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPR
        ..:..   .. : ::::::::::.:  :.   : :: :::: ....: : .:: :.  :
CCDS19 ETAYIEDRPLHMLYCAAEENCLASSARSANW-PYGHRRLLRFSSQIHNLGRADFRPKAGR
     540       550       560       570        580       590        

           290       300       310       320       330       340   
pF1KB6 YSWEWHSCHQHYHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAH
       .:: :: :: :::::: :.:::.:  :  . :::::::::::::: :.    .:. :.  
CCDS19 HSWVWHECHGHYHSMDIFTHYDILTPNGTK-VAEGHKASFCLEDTECQEDVSKRYECANF
      600       610       620        630       640       650       

            350       360       370       380       390       400  
pF1KB6 -TQGLSPGCYDTYGADIDCQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRY
         ::.. ::.: :  :::::::::::::::::::.: .::.. : :::.:::...:. .:
CCDS19 GEQGITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVINPNFEVAESDFTNNAMKCNCKY
       660       670       680       690       700       710       

            410                            
pF1KB6 TGHHAYASGCTISPY                     
        ::. .. .: :                        
CCDS19 DGHRIWVHNCHIGDAFSEEANRRFERYPGQTSNQII
       720       730       740       750   

>>CCDS7473.1 LOXL4 gene_id:84171|Hs108|chr10              (756 aa)
 initn: 725 init1: 485 opt: 765  Z-score: 678.5  bits: 135.4 E(32554): 1.8e-31
Smith-Waterman score: 765; 49.5% identity (71.6% similar) in 218 aa overlap (196-412:519-731)

         170       180       190       200       210       220     
pF1KB6 MVGDDPYNPYKYSDDNPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQAS
                                     :::.  : .    . . :::: .   .: .
CCDS74 EVVMSGVRCSGTELALQQCQRHGPVHCSHGGGRFLAGVSC---MDSAPDLVMNAQLVQET
      490       500       510       520          530       540     

         230       240       250       260       270       280     
pF1KB6 TYVQKMSMYNLRCAAEENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRYS
       .:..   . .: :: :::::...: . :   : .: ::::  .. : : .:: :.  : :
CCDS74 AYLEDRPLSQLYCAHEENCLSKSADHMDW-PYGYRRLLRFSTQIYNLGRTDFRPKTGRDS
         550       560       570        580       590       600    

         290       300       310       320       330       340     
pF1KB6 WEWHSCHQHYHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAH-T
       : ::.::.::::.. :.:::::  : .. ::::::::::::::.:  : .::.::.    
CCDS74 WVWHQCHRHYHSIEVFTHYDLLTLNGSK-VAEGHKASFCLEDTNCPTGLQRRYACANFGE
          610       620       630        640       650       660   

          350       360       370       380       390       400    
pF1KB6 QGLSPGCYDTYGADIDCQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYTG
       ::.. ::.:::  ::::::.::::: :::::..: ::: : : :::..::...:  .: :
CCDS74 QGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVNPHYEVAESDFSNNMLQCRCKYDG
           670       680       690       700       710       720   

          410                           
pF1KB6 HHAYASGCTISPY                    
       :...  .:                         
CCDS74 HRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI
           730       740       750      

>>CCDS34864.1 LOXL2 gene_id:4017|Hs108|chr8               (774 aa)
 initn: 707 init1: 492 opt: 761  Z-score: 674.8  bits: 134.7 E(32554): 2.9e-31
Smith-Waterman score: 761; 47.1% identity (72.4% similar) in 221 aa overlap (195-414:531-748)

          170       180       190       200       210       220    
pF1KB6 GMVGDDPYNPYKYSDDNPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQA
                                     : :  . : :..  . . :::: .  ..: 
CCDS34 SNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQYGAGVACSETA-PDLVLNAEMVQQ
              510       520       530       540        550         

          230       240       250       260       270       280    
pF1KB6 STYVQKMSMYNLRCAAEENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRY
       .::..   :. :.:: :::::...: ..:     .: :::: ....:.: ::: :.  :.
CCDS34 TTYLEDRPMFMLQCAMEENCLSASAAQTDPTT-GYRRLLRFSSQIHNNGQSDFRPKNGRH
     560       570       580       590        600       610        

          290       300       310       320       330       340    
pF1KB6 SWEWHSCHQHYHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAH-
       .: ::.::.:::::. :.:::::. :  . :::::::::::::: :.   .. . :.   
CCDS34 AWIWHDCHRHYHSMEVFTHYDLLNLNGTK-VAEGHKASFCLEDTECEGDIQKNYECANFG
      620       630       640        650       660       670       

           350       360       370       380       390       400   
pF1KB6 TQGLSPGCYDTYGADIDCQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYT
        ::.. ::.: :  ::::::.::::: ::.:...: .::.. : ::::.::...:  :: 
CCDS34 DQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVINPNFEVAESDYSNNIMKCRSRYD
       680       690       700       710       720       730       

           410                              
pF1KB6 GHHAYASGCTISPY                       
       ::. .  .: :                          
CCDS34 GHRIWMYNCHIGGSFSEETEKKFEHFSGLLNNQLSPQ
       740       750       760       770    




417 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:26:44 2016 done: Sat Nov  5 17:26:45 2016
 Total Scan time:  2.460 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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