Result of FASTA (omim) for pF1KB0940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0940, 390 aa
  1>>>pF1KB0940 390 - 390 aa - 390 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3547+/-0.000348; mu= 13.8689+/- 0.022
 mean_var=128.0414+/-26.487, 0's: 0 Z-trim(119.2): 130  B-trim: 1732 in 2/50
 Lambda= 0.113344
 statistics sampled from 32714 (32874) to 32714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.385), width:  16
 Scan time:  9.320

The best scores are:                                      opt bits E(85289)
NP_002389 (OMIM: 601739) homeobox protein Meis1 [H ( 390) 2740 459.0 8.7e-129
XP_005264380 (OMIM: 601739) PREDICTED: homeobox pr ( 406) 2714 454.8 1.7e-127
XP_005264379 (OMIM: 601739) PREDICTED: homeobox pr ( 465) 2601 436.3 6.9e-122
XP_005264378 (OMIM: 601739) PREDICTED: homeobox pr ( 481) 2575 432.1 1.3e-120
NP_733774 (OMIM: 601740) homeobox protein Meis2 is ( 394) 2377 399.6 6.5e-111
XP_016859631 (OMIM: 601739) PREDICTED: homeobox pr ( 417) 2377 399.7 6.7e-111
XP_006720588 (OMIM: 601740) PREDICTED: homeobox pr ( 393) 2351 395.4 1.2e-109
XP_016859630 (OMIM: 601739) PREDICTED: homeobox pr ( 433) 2351 395.4 1.3e-109
NP_002390 (OMIM: 601740) homeobox protein Meis2 is ( 381) 2284 384.4 2.4e-106
NP_733776 (OMIM: 601740) homeobox protein Meis2 is ( 470) 2250 379.0 1.3e-104
NP_001207411 (OMIM: 601740) homeobox protein Meis2 ( 470) 2250 379.0 1.3e-104
XP_005264382 (OMIM: 601739) PREDICTED: homeobox pr ( 325) 2163 364.6 1.9e-100
NP_733777 (OMIM: 601740) homeobox protein Meis2 is ( 401) 2074 350.1 5.4e-96
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 2074 350.2 6.1e-96
XP_006720587 (OMIM: 601740) PREDICTED: homeobox pr ( 400) 2048 345.9   1e-94
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 2048 345.9 1.2e-94
XP_005264381 (OMIM: 601739) PREDICTED: homeobox pr ( 400) 2024 341.9 1.6e-93
NP_758526 (OMIM: 601740) homeobox protein Meis2 is ( 388) 1981 334.9   2e-91
NP_758527 (OMIM: 601740) homeobox protein Meis2 is ( 306) 1879 318.1 1.8e-86
XP_016877694 (OMIM: 601740) PREDICTED: homeobox pr ( 306) 1879 318.1 1.8e-86
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 1800 305.3 1.5e-82
XP_016859635 (OMIM: 601739) PREDICTED: homeobox pr ( 246) 1729 293.5 3.6e-79
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 1720 292.2 1.4e-78
XP_016859634 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 1590 270.9 3.1e-72
XP_016859633 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 1590 270.9 3.1e-72
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 1477 252.3 9.5e-67
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 1342 230.3 5.1e-60
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 1342 230.3 5.1e-60
NP_001307623 (OMIM: 602100) homeobox protein PKNOX ( 435)  459 86.1 1.8e-16
XP_016873601 (OMIM: 613066) PREDICTED: homeobox pr ( 327)  453 85.0 2.9e-16
XP_011541248 (OMIM: 613066) PREDICTED: homeobox pr ( 356)  453 85.0 3.1e-16
NP_004562 (OMIM: 602100) homeobox protein PKNOX1 i ( 436)  443 83.4 1.1e-15
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339)  386 74.0 5.9e-13
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339)  386 74.0 5.9e-13
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339)  386 74.0 5.9e-13
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443)  386 74.1 7.1e-13
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472)  386 74.2 7.5e-13
XP_011541246 (OMIM: 613066) PREDICTED: homeobox pr ( 472)  386 74.2 7.5e-13
NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [ ( 472)  386 74.2 7.5e-13
XP_011541247 (OMIM: 613066) PREDICTED: homeobox pr ( 472)  386 74.2 7.5e-13
XP_005271699 (OMIM: 613066) PREDICTED: homeobox pr ( 472)  386 74.2 7.5e-13
NP_001273187 (OMIM: 602100) homeobox protein PKNOX ( 319)  375 72.2   2e-12
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX  ( 241)  258 52.9 9.2e-07
NP_631960 (OMIM: 400025) homeobox protein TGIF2LY  ( 185)  252 51.9 1.5e-06
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286)  247 51.2 3.6e-06
NP_068581 (OMIM: 607294) homeobox protein TGIF2 [H ( 237)  245 50.8   4e-06
NP_001186444 (OMIM: 607294) homeobox protein TGIF2 ( 237)  245 50.8   4e-06
NP_001186442 (OMIM: 607294) homeobox protein TGIF2 ( 237)  245 50.8   4e-06
NP_001186443 (OMIM: 607294) homeobox protein TGIF2 ( 237)  245 50.8   4e-06
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272)  239 49.9 8.7e-06


>>NP_002389 (OMIM: 601739) homeobox protein Meis1 [Homo   (390 aa)
 initn: 2740 init1: 2740 opt: 2740  Z-score: 2433.1  bits: 459.0 E(85289): 8.7e-129
Smith-Waterman score: 2740; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
              310       320       330       340       350       360

              370       380       390
pF1KB0 DGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
       ::::::::::::::::::::::::::::::
NP_002 DGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
              370       380       390

>>XP_005264380 (OMIM: 601739) PREDICTED: homeobox protei  (406 aa)
 initn: 2714 init1: 2714 opt: 2714  Z-score: 2409.9  bits: 454.8 E(85289): 1.7e-127
Smith-Waterman score: 2714; 100.0% identity (100.0% similar) in 386 aa overlap (5-390:21-406)

                               10        20        30        40    
pF1KB0                 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
                           ::::::::::::::::::::::::::::::::::::::::
XP_005 MAQRRKMESCAFAFEFALNLYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB0 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB0 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB0 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB0 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB0 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
              310       320       330       340       350       360

          350       360       370       380       390
pF1KB0 GTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
              370       380       390       400      

>>XP_005264379 (OMIM: 601739) PREDICTED: homeobox protei  (465 aa)
 initn: 2599 init1: 2599 opt: 2601  Z-score: 2309.3  bits: 436.3 E(85289): 6.9e-122
Smith-Waterman score: 2603; 96.4% identity (96.9% similar) in 392 aa overlap (1-382:1-392)

               10        20        30        40        50        60
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
              310       320       330       340       350       360

              370                 380       390                    
pF1KB0 DGQQHMGIRAPG--PMSG--------MGMNMGMEGQWHYM                    
       ::::::::::::   : :        ::..::                            
XP_005 DGQQHMGIRAPGLQSMPGEYVARGGPMGVSMGQPSYTQPQMPPHPAQLRHGPPMHTYIPG
              370       380       390       400       410       420

XP_005 HPHHPTVMMHGGPPHPGMPMSASSPTVLNTGDPTMSGQVMDIHAQ
              430       440       450       460     

>>XP_005264378 (OMIM: 601739) PREDICTED: homeobox protei  (481 aa)
 initn: 2573 init1: 2573 opt: 2575  Z-score: 2286.1  bits: 432.1 E(85289): 1.3e-120
Smith-Waterman score: 2577; 96.4% identity (96.9% similar) in 388 aa overlap (5-382:21-408)

                               10        20        30        40    
pF1KB0                 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
                           ::::::::::::::::::::::::::::::::::::::::
XP_005 MAQRRKMESCAFAFEFALNLYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB0 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB0 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB0 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB0 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB0 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
              310       320       330       340       350       360

          350       360       370                 380       390    
pF1KB0 GTPYNPDGQPMGGFVMDGQQHMGIRAPG--PMSG--------MGMNMGMEGQWHYM    
       ::::::::::::::::::::::::::::   : :        ::..::            
XP_005 GTPYNPDGQPMGGFVMDGQQHMGIRAPGLQSMPGEYVARGGPMGVSMGQPSYTQPQMPPH
              370       380       390       400       410       420

XP_005 PAQLRHGPPMHTYIPGHPHHPTVMMHGGPPHPGMPMSASSPTVLNTGDPTMSGQVMDIHA
              430       440       450       460       470       480

>>NP_733774 (OMIM: 601740) homeobox protein Meis2 isofor  (394 aa)
 initn: 1443 init1: 1141 opt: 2377  Z-score: 2112.3  bits: 399.6 E(85289): 6.5e-111
Smith-Waterman score: 2377; 85.8% identity (94.9% similar) in 394 aa overlap (1-390:1-394)

               10        20        30        40        50          
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
       ::::::.:::::::::::.:..::::::: : . ::::::::::::. :.   :. : :.
NP_733 MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
       :  ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
NP_733 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
              130       140       150       160       170       180

      180       190       200        210        220       230      
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
       ::::::::::.:.:.:::: :...  :.::.:. ::  :::::..::.:.::::::::::
NP_733 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
       .:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
NP_733 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
              250       260       270       280       290       300

        300       310       320       330       340       350      
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
       :::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
NP_733 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
              310       320       330       340       350       360

        360       370       380       390
pF1KB0 GFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
       .::.:::::::::  ::::::::::::.::::::
NP_733 SFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
              370       380       390    

>>XP_016859631 (OMIM: 601739) PREDICTED: homeobox protei  (417 aa)
 initn: 2726 init1: 2367 opt: 2377  Z-score: 2111.9  bits: 399.7 E(85289): 6.7e-111
Smith-Waterman score: 2676; 93.5% identity (93.5% similar) in 417 aa overlap (1-390:1-417)

               10        20        30        40        50        60
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
              250       260       270       280       290       300

              310       320       330       340                    
pF1KB0 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA-------------------
       :::::::::::::::::::::::::::::::::::::::::                   
XP_016 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGKSPIVTVFKSRKRKPSSS
              310       320       330       340       350       360

                     350       360       370       380       390
pF1KB0 --------VSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
               :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSPGGPLPVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
              370       380       390       400       410       

>>XP_006720588 (OMIM: 601740) PREDICTED: homeobox protei  (393 aa)
 initn: 1417 init1: 1141 opt: 2351  Z-score: 2089.3  bits: 395.4 E(85289): 1.2e-109
Smith-Waterman score: 2351; 85.6% identity (94.9% similar) in 390 aa overlap (5-390:4-393)

               10        20        30        40        50          
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
           ::.:::::::::::.:..::::::: : . ::::::::::::. :.   :. : :.
XP_006  MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
                10        20        30        40        50         

       60        70        80        90       100       110        
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
       :  ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
XP_006 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
     120       130       140       150       160       170         

      180       190       200        210        220       230      
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
       ::::::::::.:.:.:::: :...  :.::.:. ::  :::::..::.:.::::::::::
XP_006 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
     180       190       200       210       220       230         

        240       250       260       270       280       290      
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
       .:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
XP_006 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
     240       250       260       270       280       290         

        300       310       320       330       340       350      
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
       :::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
XP_006 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
     300       310       320       330       340       350         

        360       370       380       390
pF1KB0 GFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
       .::.:::::::::  ::::::::::::.::::::
XP_006 SFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
     360       370       380       390   

>>XP_016859630 (OMIM: 601739) PREDICTED: homeobox protei  (433 aa)
 initn: 2700 init1: 2341 opt: 2351  Z-score: 2088.8  bits: 395.4 E(85289): 1.3e-109
Smith-Waterman score: 2650; 93.5% identity (93.5% similar) in 413 aa overlap (5-390:21-433)

                               10        20        30        40    
pF1KB0                 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
                           ::::::::::::::::::::::::::::::::::::::::
XP_016 MAQRRKMESCAFAFEFALNLYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB0 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB0 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB0 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB0 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB0 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_016 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGKS
              310       320       330       340       350       360

                                     350       360       370       
pF1KB0 ------------------------VSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGM
                               ::::::::::::::::::::::::::::::::::::
XP_016 PIVTVFKSRKRKPSSSHSPGGPLPVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGM
              370       380       390       400       410       420

       380       390
pF1KB0 GMNMGMEGQWHYM
       :::::::::::::
XP_016 GMNMGMEGQWHYM
              430   

>>NP_002390 (OMIM: 601740) homeobox protein Meis2 isofor  (381 aa)
 initn: 1350 init1: 1141 opt: 2284  Z-score: 2030.3  bits: 384.4 E(85289): 2.4e-106
Smith-Waterman score: 2284; 85.6% identity (94.8% similar) in 381 aa overlap (14-390:1-381)

               10        20        30        40        50          
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
                    :::::.:..::::::: : . ::::::::::::. :.   :. : :.
NP_002              MDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
                            10        20        30        40       

       60        70        80        90       100       110        
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
       :  ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
NP_002 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
        50        60        70        80        90       100       

      120       130       140       150       160       170        
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
       110       120       130       140       150       160       

      180       190       200        210        220       230      
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
       ::::::::::.:.:.:::: :...  :.::.:. ::  :::::..::.:.::::::::::
NP_002 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
       170       180       190       200       210       220       

        240       250       260       270       280       290      
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
       .:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
NP_002 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
       230       240       250       260       270       280       

        300       310       320       330       340       350      
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
       :::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
NP_002 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
       290       300       310       320       330       340       

        360       370       380       390
pF1KB0 GFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
       .::.:::::::::  ::::::::::::.::::::
NP_002 SFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
       350       360       370       380 

>>NP_733776 (OMIM: 601740) homeobox protein Meis2 isofor  (470 aa)
 initn: 2273 init1: 1004 opt: 2250  Z-score: 1999.0  bits: 379.0 E(85289): 1.3e-104
Smith-Waterman score: 2250; 83.0% identity (92.6% similar) in 393 aa overlap (1-383:1-393)

               10        20        30        40        50          
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
       ::::::.:::::::::::.:..::::::: : . ::::::::::::. :.   :. : :.
NP_733 MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
       :  ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
NP_733 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
              130       140       150       160       170       180

      180       190       200        210        220       230      
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
       ::::::::::.:.:.:::: :...  :.::.:. ::  :::::..::.:.::::::::::
NP_733 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
       .:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
NP_733 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
              250       260       270       280       290       300

        300       310       320       330       340       350      
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
       :::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
NP_733 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
              310       320       330       340       350       360

        360       370             380       390                    
pF1KB0 GFVMDGQQHMGIRA------PGPMSGMGMNMGMEGQWHYM                    
       .::.:::::::::       :: . ..:  :::                           
NP_733 SFVLDGQQHMGIRPAGLQSMPGDYVSQGGPMGMSMAQPSYTPPQMTPHPTQLRHGPPMHS
              370       380       390       400       410       420

NP_733 YLPSHPHHPAMMMHGGPPTHPGMTMSAQSPTMLNSVDPNVGGQVMDIHAQ
              430       440       450       460       470




390 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:21:57 2016 done: Sat Nov  5 17:21:59 2016
 Total Scan time:  9.320 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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