FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0939, 160 aa
  1>>>pF1KB0939 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0545+/-0.000626; mu= 3.0826+/- 0.038
 mean_var=188.0901+/-37.519, 0's: 0 Z-trim(119.3): 2  B-trim: 0 in 0/54
 Lambda= 0.093517
 statistics sampled from 20539 (20541) to 20539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.878), E-opt: 0.2 (0.631), width:  16
 Scan time:  2.380

The best scores are:                                      opt bits E(32554)
CCDS34419.1 GPSM3 gene_id:63940|Hs108|chr6         ( 160) 1117 160.9   3e-40


>>CCDS34419.1 GPSM3 gene_id:63940|Hs108|chr6              (160 aa)
 initn: 1117 init1: 1117 opt: 1117  Z-score: 836.0  bits: 160.9 E(32554): 3e-40
Smith-Waterman score: 1117; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB0 MEAERPQEEEDGEQGPPQDEEGWPPPNSTTRPWRSAPPSPPPPGTRHTALGPRSASLLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MEAERPQEEEDGEQGPPQDEEGWPPPNSTTRPWRSAPPSPPPPGTRHTALGPRSASLLSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QTELLLDLVAEAQSRRLEEQRATFYTPQNPSSLAPAPLRPLEDREQLYSTILSHQCQRME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QTELLLDLVAEAQSRRLEEQRATFYTPQNPSSLAPAPLRPLEDREQLYSTILSHQCQRME
               70        80        90       100       110       120

              130       140       150       160
pF1KB0 AQRSEPPLPPGGQELLELLLRVQGGGRMEEQRSRPPTHTC
       ::::::::::::::::::::::::::::::::::::::::
CCDS34 AQRSEPPLPPGGQELLELLLRVQGGGRMEEQRSRPPTHTC
              130       140       150       160




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:21:20 2016 done: Sat Nov  5 17:21:20 2016
 Total Scan time:  2.380 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]