GENSCAN 1.0	Date run:  5-Nov-116	Time: 17:17:51

Sequence gi568815592r:107605203_107849795 : 244593 bp : 44.08% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2631   2712   82  1  1   63  105    28 0.096   0.70
 1.02 Intr +   6068   6213  146  2  2   58   46   101 0.343   2.83
 1.03 Term +  11446  11618  173  2  2   61   42    87 0.238  -0.61
 1.04 PlyA +  13309  13314    6                               1.05

 2.00 Prom +  24583  24622   40                              -4.16
 2.01 Sngl +  28420  30264 1845  0  0   69   42  2307 0.752 218.33
 2.02 PlyA +  32641  32646    6                               1.05

 3.03 PlyA -  32999  32994    6                               1.05
 3.02 Term -  35611  35571   41  2  2   89   48    77 0.813   1.15
 3.01 Init -  36722  36650   73  2  1   86  110    21 0.805   3.44
 3.00 Prom -  39428  39389   40                              -3.96

 4.06 PlyA -  40149  40144    6                               1.05
 4.05 Term -  41574  41231  344  1  2   85   48   165 0.992   6.87
 4.04 Intr -  42454  42275  180  2  0   98   70    76 0.978   6.64
 4.03 Intr -  48284  48149  136  2  1   73   68    87 0.668   5.34
 4.02 Intr -  54254  54158   97  1  1   71    7    83 0.304  -1.49
 4.01 Init -  55189  55116   74  1  2   68   71    64 0.275   1.27
 4.00 Prom -  58135  58096   40                              -3.76

 5.00 Prom +  60896  60935   40                              -3.96
 5.01 Init +  63944  64062  119  1  2   82    9    94 0.535   0.57
 5.02 Intr +  70522  70589   68  1  2  112   49   106 0.794   7.65
 5.03 Intr +  71035  71159  125  2  2   38  101    62 0.619   2.80
 5.04 Intr +  74914  74931   18  0  0  119  115    -9 0.327   1.71
 5.05 Intr +  75216  75308   93  2  0   67   75    42 0.186   0.96
 5.06 Intr +  83842  83947  106  0  1   64   59    69 0.616   1.39
 5.07 Intr +  86473  86625  153  2  0   61   93    80 0.823   5.84
 5.08 Intr +  93722  93826  105  0  0  103   56    47 0.706   3.19
 5.09 Term +  94627  94790  164  2  2   19   49   148 0.666   2.10
 5.10 PlyA +  95428  95433    6                              -0.45

 6.07 PlyA -  96978  96973    6                               1.05
 6.06 Term - 100123  99998  126  1  0   59   38   199 0.998  10.28
 6.05 Intr - 102809 102664  146  0  2   74   34   145 0.402   7.70
 6.04 Intr - 115791 115501  291  1  0   44   40   254 0.059  13.31
 6.03 Intr - 139941 139747  195  1  0   85   96   205 0.998  20.39
 6.02 Intr - 141687 141487  201  1  0   95  110   386 0.844  40.76
 6.01 Init - 144782 144482  301  2  1   57   96   156 0.520  10.71
 6.00 Prom - 145463 145424   40                              -6.06

 7.00 Prom + 145818 145857   40                              -7.06
 7.01 Init + 147194 147349  156  1  0   81  110    78 0.647   9.21
 7.02 Term + 149506 149532   27  0  0   51   41    95 0.915  -0.83
 7.03 PlyA + 150231 150236    6                               1.05

 8.03 PlyA - 151413 151408    6                               1.05
 8.02 Term - 166425 166352   74  1  2   55   43   107 0.408   0.97
 8.01 Init - 191108 190988  121  2  1   56   91    64 0.603   3.85
 8.00 Prom - 195887 195848   40                              -3.16

 9.00 Prom + 198955 198994   40                              -6.26
 9.01 Init + 204247 204382  136  0  1  105   74    58 0.327   6.41
 9.02 Intr + 211240 211368  129  2  0   34   97   120 0.263   8.17
 9.03 Intr + 225082 225223  142  2  1   37   95    67 0.205   1.71
 9.04 Term + 233146 233293  148  1  1  119   37    68 0.095   2.17
 9.05 PlyA + 233317 233322    6                               1.05

10.05 PlyA - 233666 233661    6                               1.05
10.04 Term - 235952 235894   59  0  2   95   44    32 0.127  -2.65
10.03 Intr - 240746 240620  127  2  1   94   83    26 0.422   2.95
10.02 Intr - 243283 243170  114  1  0   92   41    70 0.643   3.34
10.01 Intr - 243535 243440   96  1  0   33   96    73 0.789   2.81

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_1|133_aa
XMRHTVSIQNLNGCWSYGPLYGASSREREGKKEGAPVEPKNSNLSGRKEKASNSNKNFLQ
MWNLKESRESKPIFSRRNKILKLKANRRGFYGALCEGPSVDSGLMITLTAETVGAVISEA
ADTHSDGWPSPLI

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_1|402_bp
ngtatgagacacactgtgtcaatccagaatcttaatggctgctggagctatgggcctctt
tacggggccagctctagagagagagaggggaagaaagagggggccccggtggagccaaag
aacagtaatctttcaggaagaaaggaaaaggccagcaacagcaacaaaaacttcctgcag
atgtggaatttgaaggaatccagagaaagcaagcctatttttagcaggaggaataaaatt
cttaaattgaaagcaaatcggagagggttctatggcgctctctgcgaggggccgagcgtg
gattcgggtctgatgattactttgactgcagaaacagtgggggctgtaatctccgaagca
gcggacactcacagcgacggttggcccagtcctttgatttag

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_2|614_aa
MDIFYKETQANLPAGLCSTLHPPMENKAEGTGVQLLTPDSWNIPLTDARRKAPSPVATAG
QSQGPGPSASTTVSPSDTANCSVTKIPTPVPKSIPISETPNIPPVSVQPPASIGPPLGVP
PRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPPHHASNPNSPLSNPMLPGIGPPPG
GPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLPPPPPGAPLPSLPFPPVSMMPNG
PMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIPIPIPHVSDSKPPNGFSSNG
ENFIPNAPGDSAAAGGKPSGHSLSPRDSKQGSSKSADSPPGCSGQALSLAPTPAEHGRSE
VVDLTRRAGSPPGPPGAGGQLGFPGVLQGPQDGVIDLTVGHRARLHNVIHRALHAHVKAE
REPSAAERRTCGGCRDGHCSPPAAGDPGPGAPAGPEAAAACNVIVNGTRGAAAEGAKSAE
PPPEQPPPPPPPAPPKKLLSPEEPAVSELESVKENNCASNCHLDGEAAKKLMGEEALAGG
DKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKPAEKAAMAPCIISSPMLSAGPEDLEP
PLKRRCLRIRNQNK

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_2|1845_bp
atggacattttctacaaagagacccaggccaatcttccagctgggctgtgcagcacatta
caccctcccatggaaaataaagcagaaggcaccggggtgcagctgctcactccagactct
tggaatatcccgctaacagatgctcggaggaaggccccctccccggtggctacagctggc
caaagccagggccctggcccgtcggcgtccaccaccgtctctccatctgacactgccaac
tgctctgtcactaaaatccccacgccagtgcccaagtccatccccatcagcgagactcca
aatatccctcctgtctccgtccagccacctgctagcatcgggcctccccttggcgtcccg
cctcggagccctcccatggtgatgaccaaccgcggcccggtgccgctgcccatcttcatg
gagcagcagatcatgcagcagatccgcccgcccttcatccgcgggcctccgcaccatgcc
tccaaccccaacagccccctgtccaaccccatgcttcccggcatcgggcccccgcccggt
ggccccagaaacctgggccccacttccagccccatgcaccggcccatgctatcgccccac
atccaccccccgagcacccccaccatgcccgggaaccccccaggcctgctgcccccgccg
cctccgggcgccccgctgccgagtcttcccttcccgccagtgagcatgatgccaaatggc
ccgatgccggtgccccagatgatgaatttcgggctgccgtcgcttgccccgctggtgccg
cccccgaccctgctcgtgccgtaccccgtgatcgtgcccctaccggtgcccatccccatc
cccatccctatccctcacgtcagcgactccaagccccccaacgggttctccagcaacggg
gagaacttcattccgaacgcccctggcgactccgcggcggcgggcggcaagccaagcgga
cactccctgtccccccgggactccaagcagggctcgtccaagtccgcggactcgcccccc
ggctgctcgggccaggccctgagcctggcgcccacgcccgccgagcatggccggagcgag
gtggtggacctgacgcggcgcgccggcagccccccgggccccccgggcgcgggcggccag
ctcggcttcccaggcgtgctgcagggcccgcaggacggcgtcatcgacctgaccgtgggc
caccgagcccggctgcacaacgtgatccaccgcgcgctgcacgcgcacgtcaaggcggag
cgcgagccgagcgccgcggagcgcaggacctgcggcggctgcagggacggccactgcagc
ccgcccgccgccggcgacccaggcccgggcgccccggcgggccccgaggcggccgcggcc
tgcaacgtcatcgtgaacggcacgcgcggcgccgccgccgagggcgctaagagcgcggag
ccgcctcccgagcagccgccgccgccgccgccgcccgcgccccccaagaagctgctgtcg
cctgaggaaccggcggtgagcgagctagagtcggtcaaggagaataactgtgcttccaac
tgccacctggacggggaggcggccaaaaagctgatgggcgaggaggccctggcggggggc
gacaagtcagacccgaaccttaataaccccgcggacgaggaccatgcctatgctctgcgg
atgctgcccaagaccggctgcgtgatccagcctgtgccaaaacccgcggagaaggctgcc
atggcaccgtgcatcatctcctcgcccatgctcagcgccgggcctgaggacctggagccg
ccgctcaaaaggaggtgcctccgaattagaaatcagaataagtaa

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_3|37_aa
MATPVPLARSLRQESLEKAGRSGEVPVLLKMEGYGYI

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_3|114_bp
atggccacccccgtccctttggcacgatctcttagacaggaaagtctggaaaaggcgggg
cgttcgggtgaggtcccagtcctgctgaagatggaaggttatgggtacatctga

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_4|276_aa
MGMVRKQALERTEWALVCRQAWSSRMGYSTTVSPTQCQYTCSRGLLDSQLQLYKCTQALP
EIHSLGHVCPSLITVKYSHYVLAAATLFIWDNNESLRTGLLSVSTCKSGTRDFMRISGMV
SLTSEVDNVEVFHYFPLHIQGKKFWAVGAIMTIFVISIYYEPGAHWHHMWKLLKVYSLES
QKREEDISKRLPNFLKSSRRPWEDLILMLRKSPEMSKEYRASPLSLSAALRSKDRQSRHR
CVTSTFHIREVRCCKSQGLPLCMHETAAHICPSLLA

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_4|831_bp
atgggcatggttaggaagcaggccctggaacggacggagtgggctcttgtctgcagacaa
gcgtggtctagcagaatgggatactccacaactgtctcaccaactcagtgccagtacaca
tgctctagaggacttctggactcgcagctacaactgtacaagtgcacacaagccctacca
gagatccactcactcgggcacgtctgcccatcacttatcacagttaaatacagccattac
gtgctggctgcggcaacgctgtttatctgggacaataacgagtccctgaggactggattg
ctctcagtctcgacttgtaaaagtggaaccagagattttatgagaatttctggaatggtt
tccctaacctctgaggttgacaacgtggaagtgtttcattattttccattacacatccaa
gggaagaagttctgggctgtaggggctatcatgacaatttttgtaataagcatctactac
gagccaggagcccactggcaccacatgtggaagcttctgaaggtttacagcctggaaagt
caaaaaagagaagaggacatatccaaaaggttgccaaactttcttaaaagtagccgcagg
ccatgggaggatctgattctgatgctgagaaaatctccggagatgtctaaggaatataga
gcaagccccctgagcctttctgctgcccttcggtctaaggacagacagtctaggcatcgc
tgtgtaacctccacattccacattcgtgaagtccgctgctgcaagagccagggcctgcct
ctgtgcatgcatgaaacagcagcccacatctgcccttccctgctggcttaa

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_5|316_aa
MWHPDRGSWHRNEQEGKDGYRGTNLEVPCCSTATPTSTPLWVKLPPPDTSTKPELQLEEL
DADSSWMPLHGSCPTGKLAVDARSSLFTEPAFPYWKKMKHTFQNILSWSKFTNLTYSVTQ
LWLLVVMAQTSYPHSLVGRKQVILHSSCLYSLDNKTSLAGDDHDDDDHDDNDSSPAEKGP
PPITKSLDKADEQSHLRLAVLELGFYKPVNLLLVAMTGCLLQLMMKKEQCGTHGGEGSTL
EGSRPDVPQDLFSPTLGFYGSTSLSADLGENVILKLYLPSFPLQESEPSAEHGENLWALY
VGFEERRSEASLAKAP

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_5|951_bp
atgtggcaccccgaccgtggttcctggcacaggaacgagcaggagggtaaggacggctac
cgtggaaccaacttggaagtgccgtgctgctcaacagccacccccacctccacaccgctt
tgggtaaaattgccgccgccggacacctcaaccaagcctgaactgcagcttgaagagctg
gatgcagattcttcctggatgcctttgcatggctcgtgtccaactggaaagctggcagtg
gatgctcgctcttccctcttcactgagcccgcttttccatactggaagaagatgaaacac
acatttcagaatatcctgagctggagcaagtttactaatctcacctacagcgtgacacag
ctgtggctgttggtagtgatggctcaaaccagctatcctcattcactggtgggcaggaag
caggtaattctacactcatcttgcctgtactctctggataataaaacaagtttagccggt
gatgatcatgatgacgatgaccatgatgataatgattcatcacctgcagagaagggccct
ccccccatcactaaatcactggacaaggctgatgagcagagccacctgcggttggcagta
cttgagttaggcttttacaagcctgtgaatttactcttggtggccatgacagggtgtctt
ctgcagctgatgatgaaaaaagagcaatgtggaacccacgggggagaaggttctactctg
gaggggagccgtccagatgtcccccaagacctcttttccccaactctaggattctacggt
tctacatcactctcggccgacctgggggagaacgtcattcttaagctctacctgccatcg
tttcctctgcaggaaagcgagcccagtgctgagcatggggagaacctctgggctctttat
gtaggatttgaagagcgcagatctgaggcctcacttgcgaaagcaccgtga

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_6|419_aa
MNPEHELESAAQAPKLQDGKVWKHDRRAMVNCRLGQNLEECRENCQILIDQMGSLFQIKS
RVLMTPLALSPPRSTPEPDLSSIPQDAATVPSLAAPQALTVCLYINKQANAGPYLERKKV
QQLPEHFGPERPSAVLQQAVQACIDCAHQQKLVFSLVKQGYGGEMVSVSASFDGKQHLRS
LPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPFPRGCSASEKVQEKEEGRMESVKTVTTEE
YLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPM
SSGGPSAPGLRPPASSPKRNTTSLEGNRCASSPSQDAQDARRPRSRNPSAWTVEDVVWFV
KDADPQALGPHVELFRKHEIDGNALLLLKSDMVMKYLGLKLGPALKLCYHIDKLKQAKF

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_6|1260_bp
atgaatcctgagcatgaacttgaatctgcagctcaggccccgaaactgcaggatggaaag
gtgtggaagcatgatagaagagcaatggttaactgccgtctaggacagaatctggaagag
tgtagagagaattgccagattctcattgaccaaatgggctctctcttccagatcaagtct
cgggttctcatgactcccttagccctctcacctccgcggagtaccccagagcccgacctc
agctccatccctcaggacgcagccacggtccccagcttggcggccccacaggctctcaca
gtctgcctctacatcaacaagcaggccaatgcggggccctatctggagaggaagaaggtg
cagcagctcccggagcattttgggcccgagcggccatcggcggtgctgcagcaggccgtc
caagcctgcatcgactgcgcccaccagcagaagctggtcttctccctggtcaagcagggc
tatggtggtgagatggtgtcagtctcggcttcctttgatggcaaacagcacctgcggagc
ctgcctgtggtgaacagcatcggctatgtcctccgcttcctcgccaagctgtgccgaagc
ctcctgtgcgatgacctcttcagccaccagcccttccccaggggctgcagtgcctctgag
aaagtccaggagaaagaggaagggaggatggaatcagtcaagacagtcaccaccgaagag
tacctggtgaaccctgtgggcatgaaccgctacagcgtggacacctccgcctccaccttt
aaccacaggggctccttgcacccctcctcctcgctgtactgcaagaggcagaactctgga
gacagccaccttgggggtggtcctgctgccaccgctggtggtccccgcactagccccatg
tcttctggtggcccctcggcacctgggctgaggcctccagcctccagccccaagagaaac
acgacctctcttgaaggaaacagatgtgcctcaagcccttctcaggatgcgcaggatgcc
aggcggccacggagcaggaacccctccgcctggactgtggaggacgtggtgtggtttgtg
aaggacgccgacccacaggctctggggcctcacgtggagctcttcagaaagcacgagatt
gatggcaacgctctgctgttgctgaagagtgacatggtcatgaagtacctgggcctgaag
ctgggacctgcactgaaactctgctaccacattgacaaactgaagcaagccaagttctga

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_7|60_aa
MNIELVCQTIIMEDIIREVNVDGEEKDPNTEPCKIPTRRAWRNEKGASKRNQKNDDDDDD

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_7|183_bp
atgaatatagagttggtatgtcagaccataataatggaagatatcatcagagaagtgaat
gtagatggagaagagaaggatccaaacactgagccctgcaagattccaacacgaagagcc
tggagaaatgagaaaggagcaagcaaaagaaatcagaaaaatgacgatgatgatgatgac
taa

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_8|64_aa
MEQLALSYIAGSENGITIGKLAVLYKVKHNLPYEPTIPLPGADVEFGYKEAYQAKLHSCD
PYKN

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_8|195_bp
atggagcaactggccctctcttacattgctgggagtgaaaatggtataaccattggaaaa
ttggcagttctttataaagttaaacataacctaccctacgaaccaacaattccactccca
ggtgctgatgtcgagtttggctacaaggaggcatatcaggcaaaattacattcctgtgac
ccttataagaattag

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_9|184_aa
MVVPVKGANESLRKGHQGVDGERENAENFFESNIHQDLFPNWKAWGHTGGHENGFSELES
VRFHLDGFCAALKTQVGSQRRKKLLEKKDRAFSLCGSGPVTLADTQGLTEWKHFSQGLAV
LVEAQPRDPYPRGSVWQKTPGIAKETRCRALDGAFVKLKHRNLSRIDRRVVRPDFRPPPL
SPKA

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_9|555_bp
atggtggtccctgtgaagggtgctaatgagagtctgaggaagggccaccaaggggtagat
ggagaaagggagaatgcagaaaacttttttgaaagtaacatccatcaggacctgtttccc
aattggaaggcatggggtcacactggtggccatgaaaatggcttttctgaactggaatcc
gtgcggttccatttagatggattctgtgcagctctgaagacacaagtaggctctcagagg
aggaagaagctactggagaagaaagacagggccttctctctttgtggctctgggcctgtg
accctggctgatactcaaggactgactgagtggaaacatttttctcaaggtctggcagtt
ttggtggaagcacagcccagagacccttatcccaggggcagcgtctggcagaaaacacca
gggattgcaaaggaaaccagatgccgagctctggatggggctttcgtgaagctaaagcac
aggaacttgagccgcattgacaggcgcgttgtcaggccagacttccggcctcccccattg
tccccgaaggcttga

>gi568815592r:107605203_107849795|GENSCAN_predicted_peptide_10|131_aa
RGVGKGVLRSDGGSPLGTSTGGFVLPPEFGEQALSPRSPDSSGSRRNERAASPSVATRGR
EVADRGPARLVGTGPSLEHSPQICPTRVAPEFNGEPGICRGKKQGPSIWKIRAVYKLLLL
VNTNDPSFYIV

>gi568815592r:107605203_107849795|GENSCAN_predicted_CDS_10|396_bp
aggggagtcggcaaaggtgttctcaggagcgacgggggatctcccctggggacgtcaacc
ggaggcttcgttctgccaccagaatttggtgagcaggcgctcagcccccggagtccggat
tccagcggcagcaggagaaatgagcgggcggcttctccctctgtggccaccagggggcgc
gaggtggccgaccggggcccggccaggctggtggggacaggaccttcactggaacattcc
ccacagatttgcccaacacgtgtggcacctgagttcaatggggagccaggcatttgtcga
ggaaagaaacaagggcccagcatctggaagatacgagcagtttataagttactgctgttg
gtcaataccaatgacccttcattttatattgtatga