Restriction map for
pF1KB0911
(Circular) (Six-base) MAPSORT of: pF1KB0911.seq Check: 5881 from: 1 to: 3557
pF1KB0911 3557 bp
With 182 enzymes: SgfI *
October 7, 2009 14:14 ..
AccI GT'mk_AC
Cuts at: 422 595 422
Size: 173 3384
Acc65I G'GTAC_C
Cuts at: 573 573
Size: 3557
AclI AA'CG_TT
Cuts at: 3397 3397
Size: 3557
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1382 1814 2561 2829 1382
Size: 432 747 268 2110
Fragments arranged by size:
2110 747 432 268
AflIII A'CryG_T
Cuts at: 909 2013 2990 909
Size: 1104 977 1476
Fragments arranged by size:
1476 1104 977
AgeI A'CCGG_T
Cuts at: 1945 1945
Size: 3557
AlwNI CAG_nnn'CTG
Cuts at: 862 2429 862
Size: 1567 1990
ApaI G_GGCC'C
Cuts at: 284 284
Size: 3557
ApaLI G'TGCA_C
Cuts at: 2327 2327
Size: 3557
ApoI r'AATT_y
Cuts at: 561 2910 3166 561
Size: 2349 256 952
Fragments arranged by size:
2349 952 256
AseI AT'TA_AT
Cuts at: 20 203 20
Size: 183 3374
AsiSI GCG_AT'CGC
Cuts at: 104 104
Size: 3557
AvaI C'yCGr_G
Cuts at: 577 577
Size: 3557
BamHI G'GATC_C
Cuts at: 582 582
Size: 3557
BanI G'GyrC_C
Cuts at: 164 573 987 1235 1270 164
Size: 409 414 248 35 2451
Fragments arranged by size:
2451 414 409 248 35
BanII G_rGCy'C
Cuts at: 249 284 571 1601 249
Size: 35 287 1030 2205
Fragments arranged by size:
2205 1030 287 35
BbeI G_GCGC'C
Cuts at: 991 1239 991
Size: 248 3309
BciVI GTATCCnnnnn_n'
Cuts at: 320 1455 2216 3557 320
Size: 1135 761 1341 320
Fragments arranged by size:
1341 1135 761 320
BclI T'GATC_A
Cuts at: 1077 1077
Size: 3557
BglII A'GATC_T
Cuts at: 1072 3109 1072
Size: 2037 1520
BlpI GC'TnA_GC
Cuts at: 669 669
Size: 3557
Bme1580I G_kGCm'C
Cuts at: 169 284 1182 1275 2331 169
Size: 115 898 93 1056 1395
Fragments arranged by size:
1395 1056 898 115 93
BmrI ACTGGGnnnn_n'
Cuts at: 769 850 1185 3329 769
Size: 81 335 2144 997
Fragments arranged by size:
2144 997 335 81
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 1924 1924
Size: 3557
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 191 191
Size: 3557
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 733 1612 2104 2402 733
Size: 879 492 298 1888
Fragments arranged by size:
1888 879 492 298
BsaI GGTCTCn'nnnn_
Cuts at: 3261 3261
Size: 3557
BsaAI yAC'GTr
Cuts at: 910 910
Size: 3557
BsaBI GATnn'nnATC
Cuts at: 6 1071 3108 6
Size: 1065 2037 455
Fragments arranged by size:
2037 1065 455
BsaHI Gr'CG_yC
Cuts at: 988 1236 1938 3434 988
Size: 248 702 1496 1111
Fragments arranged by size:
1496 1111 702 248
BsaWI w'CCGG_w
Cuts at: 746 1267 1945 2219 2366 2777 746
Size: 521 678 274 147 411 1526
Fragments arranged by size:
1526 678 521 411 274 147
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 224 332 507 516 519 224
Size: 108 175 9 3 3262
Fragments arranged by size:
3262 175 108 9 3
BseYI C'CCAG_C
Cuts at: 982 1740 2317 2813 982
Size: 758 577 496 1726
Fragments arranged by size:
1726 758 577 496
BsiEI CG_ry'CG
Cuts at: 104 1099 1145 2353 104
Size: 995 46 1208 1308
Fragments arranged by size:
1308 1208 995 46
BsiHKAI G_wGCw'C
Cuts at: 249 571 1349 1539 2331 249
Size: 322 778 190 792 1475
Fragments arranged by size:
1475 792 778 322 190
BsmI GAATG_Cn'
Cuts at: 510 510
Size: 3557
Bsp1286I G_dGCh'C
Cuts at: 169 249 284 571 1182 1275 1349 1539 1601
Size: 80 35 287 611 93 74 190 62
Cuts at: 1601 2331 169
Size: 730 1395
Fragments arranged by size:
1395 730 611 287 190 93 80 74
62 35
BspEI T'CCGG_A
Cuts at: 2777 2777
Size: 3557
BspHI T'CATG_A
Cuts at: 2733 2733
Size: 3557
BspMI ACCTGCnnnn'nnnn_
Cuts at: 607 821 1123 1504 607
Size: 214 302 381 2660
Fragments arranged by size:
2660 381 302 214
BsrBI CCG'CTC
Cuts at: 50 1849 1903 3387 3552 50
Size: 1799 54 1484 165 55
Fragments arranged by size:
1799 1484 165 55 54
BsrDI GCAATG_nn'
Cuts at: 1469 1469
Size: 3557
BsrFI r'CCGG_y
Cuts at: 1555 1736 1945 1555
Size: 181 209 3167
Fragments arranged by size:
3167 209 181
BssSI C'ACGA_G
Cuts at: 1828 2186 1828
Size: 358 3199
BstAPI GCAn_nnn'nTGC
Cuts at: 934 934
Size: 3557
BstBI TT'CG_AA
Cuts at: 1918 1918
Size: 3557
BstXI CCAn_nnnn'nTGG
Cuts at: 502 502
Size: 3557
BstYI r'GATC_y
Cuts at: 1 582 1049 1072 1407 1653 2665 2751 2763
Size: 581 467 23 335 246 1012 86 12
Cuts at: 2763 3109 1
Size: 346 449
Fragments arranged by size:
1012 581 467 449 346 335 246 86
23 12
BtgI C'CryG_G
Cuts at: 252 252
Size: 3557
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 1507 1688 1851 1507
Size: 181 163 3213
Fragments arranged by size:
3213 181 163
BtsI GCAGTG_nn'
Cuts at: 419 546 800 419
Size: 127 254 3176
Fragments arranged by size:
3176 254 127
DraI TTT'AAA
Cuts at: 556 556
Size: 3557
DrdI GACnn_nn'nnGTC
Cuts at: 1263 2121 1263
Size: 858 2699
EaeI y'GGCC_r
Cuts at: 1142 1316 1707 1734 3079 1142
Size: 174 391 27 1345 1620
Fragments arranged by size:
1620 1345 391 174 27
EagI C'GGCC_G
Cuts at: 1142 1142
Size: 3557
EarI CTCTTCn'nnn_
Cuts at: 525 537 1580 1790 525
Size: 12 1043 210 2292
Fragments arranged by size:
2292 1043 210 12
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 1765 2075 2221 3367 1765
Size: 310 146 1146 1955
Fragments arranged by size:
1955 1146 310 146
EcoICRI GAG'CTC
Cuts at: 247 569 247
Size: 322 3235
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 191 1382 1814 2561 2829 191
Size: 1191 432 747 268 919
Fragments arranged by size:
1191 919 747 432 268
EcoNI CCTnn'n_nnAGG
Cuts at: 239 239
Size: 3557
EcoO109I rG'GnC_Cy
Cuts at: 223 281 331 696 223
Size: 58 50 365 3084
Fragments arranged by size:
3084 365 58 50
EcoRI G'AATT_C
Cuts at: 561 561
Size: 3557
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 1576 1576
Size: 3557
FspI TGC'GCA
Cuts at: 1338 1338
Size: 3557
HaeII r_GCGC'y
Cuts at: 991 1239 2261 3240 991
Size: 248 1022 979 1308
Fragments arranged by size:
1308 1022 979 248
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1399 1429 1431 1461 1399
Size: 30 2 30 3495
Fragments arranged by size:
3495 30 30 2
HincII GTy'rAC
Cuts at: 596 596
Size: 3557
KasI G'GCGC_C
Cuts at: 987 1235 987
Size: 248 3309
KpnI G_GTAC'C
Cuts at: 577 577
Size: 3557
MluI A'CGCG_T
Cuts at: 2990 2990
Size: 3557
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 384 2228 2412 384
Size: 1844 184 1529
Fragments arranged by size:
1844 1529 184
MscI TGG'CCA
Cuts at: 1318 1318
Size: 3557
MslI CAynn'nnrTG
Cuts at: 500 1546 1673 500
Size: 1046 127 2384
Fragments arranged by size:
2384 1046 127
MspA1I CmG'CkG
Cuts at: 668 982 1342 2355 2600 668
Size: 314 360 1013 245 1625
Fragments arranged by size:
1625 1013 360 314 245
NaeI GCC'GGC
Cuts at: 1738 1738
Size: 3557
NarI GG'CG_CC
Cuts at: 988 1236 988
Size: 248 3309
NcoI C'CATG_G
Cuts at: 252 252
Size: 3557
NgoMIV G'CCGG_C
Cuts at: 1736 1736
Size: 3557
NspI r_CATG'y
Cuts at: 610 1110 2017 610
Size: 500 907 2150
Fragments arranged by size:
2150 907 500
PciI A'CATG_T
Cuts at: 2013 2013
Size: 3557
PflMI CCAn_nnn'nTGG
Cuts at: 327 327
Size: 3557
PfoI T'CCnGG_A
Cuts at: 312 312
Size: 3557
PmeI GTTT'AAAC
Cuts at: 556 556
Size: 3557
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2696 2728 2696
Size: 32 3525
PpuMI rG'GwC_Cy
Cuts at: 331 331
Size: 3557
PspOMI G'GGCC_C
Cuts at: 280 280
Size: 3557
PstI C_TGCA'G
Cuts at: 604 1289 604
Size: 685 2872
PvuI CG_AT'CG
Cuts at: 104 104
Size: 3557
PvuII CAG'CTG
Cuts at: 982 1342 982
Size: 360 3197
RsrII CG'GwC_CG
Cuts at: 1752 1752
Size: 3557
SacI G_AGCT'C
Cuts at: 249 571 249
Size: 322 3235
SalI G'TCGA_C
Cuts at: 594 594
Size: 3557
SanDI GG'GwC_CC
Cuts at: 331 331
Size: 3557
SapI GCTCTTCn'nnn_
Cuts at: 1580 1790 1580
Size: 210 3347
SbfI CC_TGCA'GG
Cuts at: 604 604
Size: 3557
ScaI AGT'ACT
Cuts at: 3074 3074
Size: 3557
SfcI C'TryA_G
Cuts at: 33 600 1285 2278 2469 33
Size: 567 685 993 191 1121
Fragments arranged by size:
1121 993 685 567 191
SfoI GGC'GCC
Cuts at: 989 1237 989
Size: 248 3309
SgfI GCG_AT'CGC
Cuts at: 104 104
Size: 3557
SmaI CCC'GGG
Cuts at: 579 579
Size: 3557
SmlI C'TyrA_G
Cuts at: 712 1627 2119 2381 712
Size: 915 492 262 1888
Fragments arranged by size:
1888 915 492 262
SpeI A'CTAG_T
Cuts at: 67 67
Size: 3557
SphI G_CATG'C
Cuts at: 610 1110 610
Size: 500 3057
SspI AAT'ATT
Cuts at: 159 159
Size: 3557
StyI C'CwwG_G
Cuts at: 252 386 691 1045 252
Size: 134 305 354 2764
Fragments arranged by size:
2764 354 305 134
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 152 206 1140 1273 1732 1941 152
Size: 54 934 133 459 209 1768
Fragments arranged by size:
1768 934 459 209 133 54
TatI w'GTAC_w
Cuts at: 3072 3072
Size: 3557
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 398 430 3074 3106 398
Size: 32 2644 32 849
Fragments arranged by size:
2644 849 32 32
Tth111I GACn'n_nGTC
Cuts at: 1354 1354
Size: 3557
XbaI T'CTAG_A
Cuts at: 588 588
Size: 3557
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 1052 1052
Size: 3557
XmaI C'CCGG_G
Cuts at: 577 577
Size: 3557
Enzymes that do cut:
AccI Acc65I AclI AcuI AflIII AgeI AlwNI ApaI
ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII
BbeI BciVI BclI BglII BlpI Bme1580I BmrI BplI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BseRI
BseYI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI
BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstXI BstYI
BtgI BtgZI BtsI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI
HaeII Hin4I HincII KasI KpnI MluI MmeI MscI
MslI MspA1I NaeI NarI NcoI NgoMIV NspI PciI
PflMI PfoI PmeI PpiI PpuMI PspOMI PstI PvuI
PvuII RsrII SacI SalI SanDI SapI SbfI ScaI
SfcI SfoI SgfI SmaI SmlI SpeI SphI SspI
StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI
Enzymes that do not cut:
AarI AatII AfeI AflII AhdI AleI AlfI AloI
AscI AvrII BaeI BbsI BbvCI BcgI BfrBI BglI
BmgBI BmtI Bpu10I BsaXI BsgI BsiWI BsmBI BsrGI
BssHII BstEII BstZ17I Bsu36I ClaI CspCI DraIII EcoRV
FseI FspAI HindIII HpaI MfeI NdeI NheI NotI
NruI NsiI PacI PasI PmlI PshAI PsiI PspXI
PsrI SacII SexAI SfiI SgrAI SnaBI SrfI StuI
SwaI XhoI XmnI ZraI