FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0911, 148 aa
  1>>>pF1KB0911 148 - 148 aa - 148 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4664+/-0.000965; mu= -11.0910+/- 0.059
 mean_var=576.5872+/-118.716, 0's: 0 Z-trim(120.8): 41  B-trim: 293 in 2/53
 Lambda= 0.053412
 statistics sampled from 22541 (22586) to 22541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.896), E-opt: 0.2 (0.694), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS44899.1 PRR13 gene_id:54458|Hs108|chr12        ( 148) 1179 103.1 6.7e-23
CCDS31811.1 PRR13 gene_id:54458|Hs108|chr12        (  98)  693 65.4 9.8e-12


>>CCDS44899.1 PRR13 gene_id:54458|Hs108|chr12             (148 aa)
 initn: 1179 init1: 1179 opt: 1179  Z-score: 524.6  bits: 103.1 E(32554): 6.7e-23
Smith-Waterman score: 1179; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB0 MWNPNAGQPGPNPYPPNIGCPGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFPPGGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MWNPNAGQPGPNPYPPNIGCPGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFPPGGPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKM
               70        80        90       100       110       120

              130       140        
pF1KB0 HKHQKHHKYHKHGKHSSSSSSSSSSDSD
       ::::::::::::::::::::::::::::
CCDS44 HKHQKHHKYHKHGKHSSSSSSSSSSDSD
              130       140        

>>CCDS31811.1 PRR13 gene_id:54458|Hs108|chr12             (98 aa)
 initn: 692 init1: 692 opt: 693  Z-score: 324.2  bits: 65.4 E(32554): 9.8e-12
Smith-Waterman score: 693; 95.9% identity (95.9% similar) in 98 aa overlap (51-148:3-98)

               30        40        50        60        70        80
pF1KB0 PGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFPPGGPPHPVPQPGYPGCQPLGPYPPP
                                     ::    ::::::::::::::::::::::::
CCDS31                             MWNPN--AGGPPHPVPQPGYPGCQPLGPYPPP
                                             10        20        30

               90       100       110       120       130       140
pF1KB0 YPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSS
               40        50        60        70        80        90

               
pF1KB0 SSSSSDSD
       ::::::::
CCDS31 SSSSSDSD
               




148 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:12:08 2016 done: Sat Nov  5 17:12:09 2016
 Total Scan time:  1.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]