Result of FASTA (omim) for pF1KB0473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0473, 499 aa
  1>>>pF1KB0473 499 - 499 aa - 499 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1782+/-0.000472; mu= 14.8142+/- 0.030
 mean_var=341.8772+/-74.966, 0's: 0 Z-trim(119.0): 136  B-trim: 1929 in 1/56
 Lambda= 0.069365
 statistics sampled from 32374 (32570) to 32374 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.382), width:  16
 Scan time: 10.660

The best scores are:                                      opt bits E(85289)
XP_016868729 (OMIM: 604819,615583) PREDICTED: poly ( 499) 3216 336.0 1.5e-91
NP_001258029 (OMIM: 604819,615583) poly(U)-binding ( 499) 3216 336.0 1.5e-91
NP_001258026 (OMIM: 604819,615583) poly(U)-binding ( 513) 3216 336.1 1.5e-91
NP_001258025 (OMIM: 604819,615583) poly(U)-binding ( 541) 3216 336.1 1.5e-91
NP_055096 (OMIM: 604819,615583) poly(U)-binding-sp ( 542) 3216 336.1 1.5e-91
XP_016868725 (OMIM: 604819,615583) PREDICTED: poly ( 579) 3216 336.1 1.6e-91
XP_011515232 (OMIM: 604819,615583) PREDICTED: poly ( 579) 3216 336.1 1.6e-91
NP_001129505 (OMIM: 604819,615583) poly(U)-binding ( 516) 2872 301.6 3.5e-81
XP_016868728 (OMIM: 604819,615583) PREDICTED: poly ( 516) 2872 301.6 3.5e-81
NP_001258028 (OMIM: 604819,615583) poly(U)-binding ( 530) 2872 301.7 3.5e-81
NP_001258027 (OMIM: 604819,615583) poly(U)-binding ( 558) 2872 301.7 3.6e-81
NP_510965 (OMIM: 604819,615583) poly(U)-binding-sp ( 559) 2872 301.7 3.6e-81
XP_016868724 (OMIM: 604819,615583) PREDICTED: poly ( 584) 2872 301.7 3.7e-81
XP_016868726 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
XP_011515231 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
XP_016868723 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
XP_016868727 (OMIM: 604819,615583) PREDICTED: poly ( 596) 2872 301.7 3.7e-81
NP_001020259 (OMIM: 612679) CUGBP Elav-like family ( 484)  288 43.0  0.0023
XP_011531379 (OMIM: 603518,604454) PREDICTED: nucl ( 385)  282 42.2  0.0032
NP_071505 (OMIM: 603518,604454) nucleolysin TIA-1  ( 386)  282 42.2  0.0032
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328)  278 41.7  0.0039
XP_016883636 (OMIM: 604739) PREDICTED: RNA-binding ( 341)  278 41.7  0.0039
XP_016883635 (OMIM: 604739) PREDICTED: RNA-binding ( 341)  278 41.7  0.0039
XP_016883632 (OMIM: 604739) PREDICTED: RNA-binding ( 367)  278 41.8  0.0041
XP_016883634 (OMIM: 604739) PREDICTED: RNA-binding ( 367)  278 41.8  0.0041
XP_016883630 (OMIM: 604739) PREDICTED: RNA-binding ( 367)  278 41.8  0.0041
XP_016883633 (OMIM: 604739) PREDICTED: RNA-binding ( 367)  278 41.8  0.0041
XP_016883631 (OMIM: 604739) PREDICTED: RNA-binding ( 367)  278 41.8  0.0041
NP_001310352 (OMIM: 604739) RNA-binding protein 39 ( 373)  278 41.8  0.0041
XP_011527413 (OMIM: 604739) PREDICTED: RNA-binding ( 373)  278 41.8  0.0041
XP_006723954 (OMIM: 604739) PREDICTED: RNA-binding ( 373)  278 41.8  0.0041
XP_006723953 (OMIM: 604739) PREDICTED: RNA-binding ( 373)  278 41.8  0.0041
XP_016883629 (OMIM: 604739) PREDICTED: RNA-binding ( 373)  278 41.8  0.0041
XP_016883628 (OMIM: 604739) PREDICTED: RNA-binding ( 373)  278 41.8  0.0041
XP_016883627 (OMIM: 604739) PREDICTED: RNA-binding ( 476)  278 42.0  0.0046
NP_001310351 (OMIM: 604739) RNA-binding protein 39 ( 498)  278 42.0  0.0048
NP_001229529 (OMIM: 604739) RNA-binding protein 39 ( 502)  278 42.0  0.0048
NP_001229528 (OMIM: 604739) RNA-binding protein 39 ( 508)  278 42.0  0.0048
NP_004893 (OMIM: 604739) RNA-binding protein 39 is ( 524)  278 42.1  0.0049
NP_001310353 (OMIM: 604739) RNA-binding protein 39 ( 529)  278 42.1  0.0049
NP_909122 (OMIM: 604739) RNA-binding protein 39 is ( 530)  278 42.1  0.0049
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346)  267 40.7  0.0085
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346)  267 40.7  0.0085


>>XP_016868729 (OMIM: 604819,615583) PREDICTED: poly(U)-  (499 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.7  bits: 336.0 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)

               10        20        30        40        50        60
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
              430       440       450       460       470       480

              490         
pF1KB0 KVVAEVYDQERFDNSDLSA
       :::::::::::::::::::
XP_016 KVVAEVYDQERFDNSDLSA
              490         

>>NP_001258029 (OMIM: 604819,615583) poly(U)-binding-spl  (499 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.7  bits: 336.0 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:1-499)

               10        20        30        40        50        60
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLGTLGTPGLVSPALTL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILASPPTLGLLEPKKEKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVLRNMVDPKDIDDDLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR
              430       440       450       460       470       480

              490         
pF1KB0 KVVAEVYDQERFDNSDLSA
       :::::::::::::::::::
NP_001 KVVAEVYDQERFDNSDLSA
              490         

>>NP_001258026 (OMIM: 604819,615583) poly(U)-binding-spl  (513 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.6  bits: 336.1 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:15-513)

                             10        20        30        40      
pF1KB0               MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
                     ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATATIALGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KB0 HQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KB0 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFN
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KB0 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KB0 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVLG
              250       260       270       280       290       300

        290       300       310       320       330       340      
pF1KB0 TLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPILAS
              310       320       330       340       350       360

        350       360       370       380       390       400      
pF1KB0 PPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTVMVL
              370       380       390       400       410       420

        410       420       430       440       450       460      
pF1KB0 RNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH
              430       440       450       460       470       480

        470       480       490         
pF1KB0 KAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       :::::::::::::::::::::::::::::::::
NP_001 KAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
              490       500       510   

>>NP_001258025 (OMIM: 604819,615583) poly(U)-binding-spl  (541 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.4  bits: 336.1 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:43-541)

                                             10        20        30
pF1KB0                               MENGQSTAAKLGLPPLTPEQQEALQKAKKY
                                     ::::::::::::::::::::::::::::::
NP_001 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
             20        30        40        50        60        70  

               40        50        60        70        80        90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
             80        90       100       110       120       130  

              100       110       120       130       140       150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
            140       150       160       170       180       190  

              160       170       180       190       200       210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
            200       210       220       230       240       250  

              220       230       240       250       260       270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
            260       270       280       290       300       310  

              280       290       300       310       320       330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
            320       330       340       350       360       370  

              340       350       360       370       380       390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
            380       390       400       410       420       430  

              400       410       420       430       440       450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
            440       450       460       470       480       490  

              460       470       480       490         
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
            500       510       520       530       540 

>>NP_055096 (OMIM: 604819,615583) poly(U)-binding-splici  (542 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.4  bits: 336.1 E(85289): 1.5e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:44-542)

                                             10        20        30
pF1KB0                               MENGQSTAAKLGLPPLTPEQQEALQKAKKY
                                     ::::::::::::::::::::::::::::::
NP_055 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
            20        30        40        50        60        70   

               40        50        60        70        80        90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
            80        90       100       110       120       130   

              100       110       120       130       140       150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
           140       150       160       170       180       190   

              160       170       180       190       200       210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
           200       210       220       230       240       250   

              220       230       240       250       260       270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
           260       270       280       290       300       310   

              280       290       300       310       320       330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
           320       330       340       350       360       370   

              340       350       360       370       380       390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
           380       390       400       410       420       430   

              400       410       420       430       440       450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
           440       450       460       470       480       490   

              460       470       480       490         
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
           500       510       520       530       540  

>>XP_016868725 (OMIM: 604819,615583) PREDICTED: poly(U)-  (579 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.1  bits: 336.1 E(85289): 1.6e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:81-579)

                                             10        20        30
pF1KB0                               MENGQSTAAKLGLPPLTPEQQEALQKAKKY
                                     ::::::::::::::::::::::::::::::
XP_016 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
               60        70        80        90       100       110

               40        50        60        70        80        90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
              120       130       140       150       160       170

              100       110       120       130       140       150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
              180       190       200       210       220       230

              160       170       180       190       200       210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
              240       250       260       270       280       290

              220       230       240       250       260       270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
              300       310       320       330       340       350

              280       290       300       310       320       330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
              360       370       380       390       400       410

              340       350       360       370       380       390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
              420       430       440       450       460       470

              400       410       420       430       440       450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
              480       490       500       510       520       530

              460       470       480       490         
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
              540       550       560       570         

>>XP_011515232 (OMIM: 604819,615583) PREDICTED: poly(U)-  (579 aa)
 initn: 3216 init1: 3216 opt: 3216  Z-score: 1764.1  bits: 336.1 E(85289): 1.6e-91
Smith-Waterman score: 3216; 100.0% identity (100.0% similar) in 499 aa overlap (1-499:81-579)

                                             10        20        30
pF1KB0                               MENGQSTAAKLGLPPLTPEQQEALQKAKKY
                                     ::::::::::::::::::::::::::::::
XP_011 QGGGSEPAAAAAVVAAGDKWKPPQGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKY
               60        70        80        90       100       110

               40        50        60        70        80        90
pF1KB0 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AMEQSIKSVLVKQTIAHQQQQLTNLQMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFA
              120       130       140       150       160       170

              100       110       120       130       140       150
pF1KB0 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQ
              180       190       200       210       220       230

              160       170       180       190       200       210
pF1KB0 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYG
              240       250       260       270       280       290

              220       230       240       250       260       270
pF1KB0 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAAT
              300       310       320       330       340       350

              280       290       300       310       320       330
pF1KB0 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPI
              360       370       380       390       400       410

              340       350       360       370       380       390
pF1KB0 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHM
              420       430       440       450       460       470

              400       410       420       430       440       450
pF1KB0 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAE
              480       490       500       510       520       530

              460       470       480       490         
pF1KB0 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       :::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
              540       550       560       570         

>>NP_001129505 (OMIM: 604819,615583) poly(U)-binding-spl  (516 aa)
 initn: 2867 init1: 2867 opt: 2872  Z-score: 1578.5  bits: 301.6 E(85289): 3.5e-81
Smith-Waterman score: 3172; 96.7% identity (96.7% similar) in 516 aa overlap (1-499:1-516)

               10        20        30        40        50          
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAA-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_001 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAV
               10        20        30        40        50        60

                      60        70        80        90       100   
pF1KB0 ----------------QRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 TMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB0 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KB0 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KB0 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB0 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
              310       320       330       340       350       360

           350       360       370       380       390       400   
pF1KB0 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
              370       380       390       400       410       420

           410       420       430       440       450       460   
pF1KB0 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
              430       440       450       460       470       480

           470       480       490         
pF1KB0 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       ::::::::::::::::::::::::::::::::::::
NP_001 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
              490       500       510      

>>XP_016868728 (OMIM: 604819,615583) PREDICTED: poly(U)-  (516 aa)
 initn: 2867 init1: 2867 opt: 2872  Z-score: 1578.5  bits: 301.6 E(85289): 3.5e-81
Smith-Waterman score: 3172; 96.7% identity (96.7% similar) in 516 aa overlap (1-499:1-516)

               10        20        30        40        50          
pF1KB0 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAA-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
XP_016 MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIAHQQQQLTNLQMAAV
               10        20        30        40        50        60

                      60        70        80        90       100   
pF1KB0 ----------------QRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
                       ::::::::::::::::::::::::::::::::::::::::::::
XP_016 TMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWD
               70        80        90       100       110       120

           110       120       130       140       150       160   
pF1KB0 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEAR
              130       140       150       160       170       180

           170       180       190       200       210       220   
pF1KB0 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA
              190       200       210       220       230       240

           230       240       250       260       270       280   
pF1KB0 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAA
              250       260       270       280       290       300

           290       300       310       320       330       340   
pF1KB0 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPSVGVVNPI
              310       320       330       340       350       360

           350       360       370       380       390       400   
pF1KB0 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARHMVMQKLLRKQESTV
              370       380       390       400       410       420

           410       420       430       440       450       460   
pF1KB0 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS
              430       440       450       460       470       480

           470       480       490         
pF1KB0 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       ::::::::::::::::::::::::::::::::::::
XP_016 ETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
              490       500       510      

>>NP_001258028 (OMIM: 604819,615583) poly(U)-binding-spl  (530 aa)
 initn: 2867 init1: 2867 opt: 2872  Z-score: 1578.4  bits: 301.7 E(85289): 3.5e-81
Smith-Waterman score: 3172; 96.7% identity (96.7% similar) in 516 aa overlap (1-499:15-530)

                             10        20        30        40      
pF1KB0               MENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
                     ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATATIALGTDSIKMENGQSTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
               10        20        30        40        50        60

         50                         60        70        80         
pF1KB0 HQQQQLTNLQMAA-----------------QRQRALAIMCRVYVGSIYYELGEDTIRQAF
       :::::::::::::                 ::::::::::::::::::::::::::::::
NP_001 HQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAF
               70        80        90       100       110       120

      90       100       110       120       130       140         
pF1KB0 APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
              130       140       150       160       170       180

     150       160       170       180       190       200         
pF1KB0 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY
              190       200       210       220       230       240

     210       220       230       240       250       260         
pF1KB0 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAA
              250       260       270       280       290       300

     270       280       290       300       310       320         
pF1KB0 TAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TAKITAQEAVAGAAVLGTLGTPGLVSPALTLAQPLGTLPQAVMAAQAPGVITGVTPARPP
              310       320       330       340       350       360

     330       340       350       360       370       380         
pF1KB0 IPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARH
              370       380       390       400       410       420

     390       400       410       420       430       440         
pF1KB0 MVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA
              430       440       450       460       470       480

     450       460       470       480       490         
pF1KB0 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLSA
              490       500       510       520       530




499 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:02:57 2016 done: Sat Nov  5 17:02:59 2016
 Total Scan time: 10.660 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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