Result of FASTA (ccds) for pF1KB0447
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0447, 501 aa
  1>>>pF1KB0447 501 - 501 aa - 501 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8395+/-0.000867; mu= 16.8328+/- 0.052
 mean_var=92.8536+/-18.329, 0's: 0 Z-trim(108.7): 23  B-trim: 129 in 1/51
 Lambda= 0.133099
 statistics sampled from 10396 (10403) to 10396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.32), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS47832.1 CLU gene_id:1191|Hs108|chr8            ( 449) 3016 589.3 2.9e-168
CCDS42405.1 CLUL1 gene_id:27098|Hs108|chr18        ( 466)  332 73.9 4.2e-13
CCDS74187.1 CLUL1 gene_id:27098|Hs108|chr18        ( 518)  332 74.0 4.6e-13


>>CCDS47832.1 CLU gene_id:1191|Hs108|chr8                 (449 aa)
 initn: 3016 init1: 3016 opt: 3016  Z-score: 3134.3  bits: 589.3 E(32554): 2.9e-168
Smith-Waterman score: 3016; 100.0% identity (100.0% similar) in 449 aa overlap (53-501:1-449)

             30        40        50        60        70        80  
pF1KB0 PSAHNAASPGGARGHRVPLTEACKDSRIGGMMKTLLLFVGLLLTWESGQVLGDQTVSDNE
                                     ::::::::::::::::::::::::::::::
CCDS47                               MMKTLLLFVGLLLTWESGQVLGDQTVSDNE
                                             10        20        30

             90       100       110       120       130       140  
pF1KB0 LQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTNEERKTLLSNLEEAKKKKEDALNETRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTNEERKTLLSNLEEAKKKKEDALNETRE
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KB0 SETKLKELPGVCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQSSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SETKLKELPGVCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQSSPF
              100       110       120       130       140       150

            210       220       230       240       250       260  
pF1KB0 YFWMNGDRIDSLLENDRQQTHMLDVMQDHFSRASSIIDELFQDRFFTREPQDTYHYLPFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YFWMNGDRIDSLLENDRQQTHMLDVMQDHFSRASSIIDELFQDRFFTREPQDTYHYLPFS
              160       170       180       190       200       210

            270       280       290       300       310       320  
pF1KB0 LPHRRPHFFFPKSRIVRSLMPFSPYEPLNFHAMFQPFLEMIHEAQQAMDIHFHSPAFQHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LPHRRPHFFFPKSRIVRSLMPFSPYEPLNFHAMFQPFLEMIHEAQQAMDIHFHSPAFQHP
              220       230       240       250       260       270

            330       340       350       360       370       380  
pF1KB0 PTEFIREGDDDRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PTEFIREGDDDRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDES
              280       290       300       310       320       330

            390       400       410       420       430       440  
pF1KB0 LQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVA
              340       350       360       370       380       390

            450       460       470       480       490       500 
pF1KB0 SHTSDSDVPSGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHTSDSDVPSGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
              400       410       420       430       440         

>>CCDS42405.1 CLUL1 gene_id:27098|Hs108|chr18             (466 aa)
 initn: 274 init1: 120 opt: 332  Z-score: 348.7  bits: 73.9 E(32554): 4.2e-13
Smith-Waterman score: 566; 25.6% identity (60.1% similar) in 476 aa overlap (53-499:1-464)

             30        40        50        60            70        
pF1KB0 PSAHNAASPGGARGHRVPLTEACKDSRIGGMMKTLLLFVGLLLTW----ESGQVLGDQTV
                                     :   ::.:.  :: :    . . .  :.:.
CCDS42                               MKPPLLVFIVCLL-WLKDSHCAPTWKDKTA
                                             10         20         

       80        90       100       110       120       130        
pF1KB0 SDNELQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTNEERKTLLSNLEEAKKKKEDALN
        ...:. .:. :   ...:...:..:.::.: ..:. ..:. .:.:.:.. ...:..::.
CCDS42 ISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEHTNLMSTLKKCREEKQEALK
      30        40        50        60        70        80         

      140       150       160       170       180       190        
pF1KB0 ETRESETKLKELPGVCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQ
          : . .:.:   .: :..   : ::. ::...::..:. .:. . . :  ..:.:. .
CCDS42 LLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYT-TCQPSWSSVKNKIERFFRK
      90       100       110       120        130       140        

      200       210             220       230       240        250 
pF1KB0 SSPFYFWMNGDR------IDSLLENDRQQTHMLDVMQDHFSRASSIIDELFQDRF-FTRE
          : : .. :        ..:.:.: : :.: ::    ::. .  .. ::.  :   :.
CCDS42 IYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDV----FSQLTVDVNSLFNRSFNVFRQ
      150       160       170       180           190       200    

                   260       270         280       290       300   
pF1KB0 PQDTY------HYLPFSLPHRRPHFF--FPKSRIVRSLMPFSPYEPLNFHAMFQPFLEMI
        :. .      :..  .    .:.::  : :  .... .      : ::  .:  :   :
CCDS42 MQQEFDQTFQSHFIS-DTDLTEPYFFPAFSKEPMTKADLEQCWDIP-NFFQLFCNFSVSI
          210        220       230       240        250       260  

                    310       320       330       340       350    
pF1KB0 HEA---------QQAMDIHFHSPAFQHPPTEFIREGDDDRTVCREIRHNSTGCLRMKDQC
       .:.         .   :.  .. : .:          .:: .: :. .: . :......:
CCDS42 YESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEKC
            270       280       290       300       310       320  

          360       370       380       390       400       410    
pF1KB0 DKCREILSVDCSTNNPSQAKLRRELDESLQVAERLTRKYNELLKSYQWKMLNTSSLLEQL
       .::.  :: ::    :.   :. ::::......  ...:...:.  . .. .:. :.:..
CCDS42 QKCQAHLSEDC----PDVPALHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEKM
            330           340       350       360       370        

          420       430       440        450       460       470   
pF1KB0 NEQFNWVSRLANLTQGEDQYYLRVTTVAS-HTSDSDVPSGVTEVVVKLFDSDPITVTVPV
         ::.:::.::: .   .  .  . .:   : .. .  . .  . .... :. .:. .:.
CCDS42 RGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETMMTDLSILPSSNFTLKIPL
      380       390       400       410       420       430        

           480       490       500 
pF1KB0 EVSRKNPKFMETVAEKALQEYRKKHREE
       : : .. .:.  :. ::::..... .  
CCDS42 EESAESSNFIGYVVAKALQHFKEHFKTW
      440       450       460      

>>CCDS74187.1 CLUL1 gene_id:27098|Hs108|chr18             (518 aa)
 initn: 274 init1: 120 opt: 332  Z-score: 348.1  bits: 74.0 E(32554): 4.6e-13
Smith-Waterman score: 577; 25.1% identity (58.9% similar) in 514 aa overlap (15-499:15-516)

               10        20        30        40        50        60
pF1KB0 MQVCSQPQRGCVREQSAINTAPPSAHNAASPGGARGHRVPLTEACKDSRIGGMMKTLLLF
                     :....    :. .   :   :   . :. .   :  :.:   ::.:
CCDS74 MRTWDYRWSLALVAQTGVHCCNLSSLQPLPPRFKRFSCLSLSSGWDYSNSGNMKPPLLVF
               10        20        30        40        50        60

                   70        80        90       100       110      
pF1KB0 VGLLLTW----ESGQVLGDQTVSDNELQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTN
       .  :: :    . . .  :.:. ...:. .:. :   ...:...:..:.::.: ..:. .
CCDS74 IVCLL-WLKDSHCAPTWKDKTAISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKE
                70        80        90       100       110         

        120       130       140       150       160       170      
pF1KB0 EERKTLLSNLEEAKKKKEDALNETRESETKLKELPGVCNETMMALWEECKPCLKQTCMKF
       .:. .:.:.:.. ...:..::.   : . .:.:   .: :..   : ::. ::...::..
CCDS74 KEHTNLMSTLKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRI
     120       130       140       150       160       170         

        180       190       200       210             220       230
pF1KB0 YARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDR------IDSLLENDRQQTHMLDVMQD
       :. .:. . . :  ..:.:. .   : : .. :        ..:.:.: : :.: ::   
CCDS74 YT-TCQPSWSSVKNKIERFFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDV---
     180        190       200       210       220       230        

              240        250             260       270         280 
pF1KB0 HFSRASSIIDELFQDRF-FTREPQDTY------HYLPFSLPHRRPHFF--FPKSRIVRSL
        ::. .  .. ::.  :   :. :. .      :..  .    .:.::  : :  .... 
CCDS74 -FSQLTVDVNSLFNRSFNVFRQMQQEFDQTFQSHFIS-DTDLTEPYFFPAFSKEPMTKAD
          240       250       260       270        280       290   

             290       300                310       320       330  
pF1KB0 MPFSPYEPLNFHAMFQPFLEMIHEA---------QQAMDIHFHSPAFQHPPTEFIREGDD
       .      : ::  .:  :   :.:.         .   :.  .. : .:          .
CCDS74 LEQCWDIP-NFFQLFCNFSVSIYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQ
           300        310       320       330       340       350  

            340       350       360       370       380       390  
pF1KB0 DRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDESLQVAERLTRK
       :: .: :. .: . :......:.::.  :: ::    :.   :. ::::......  ...
CCDS74 DRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDC----PDVPALHTELDEAIRLVNVSNQQ
            360       370       380           390       400        

            400       410       420       430       440        450 
pF1KB0 YNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVAS-HTSDSDVP
       :...:.  . .. .:. :.:..  ::.:::.::: .   .  .  . .:   : .. .  
CCDS74 YGQILQMTRKHLEDTAYLVEKMRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQ
      410       420       430       440       450       460        

             460       470       480       490       500 
pF1KB0 SGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
       . .  . .... :. .:. .:.: : .. .:.  :. ::::..... .  
CCDS74 DETMMTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFKEHFKTW
      470       480       490       500       510        




501 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:54:30 2016 done: Sat Nov  5 16:54:31 2016
 Total Scan time:  3.270 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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