GENSCAN 1.0	Date run:  5-Nov-116	Time: 16:51:50

Sequence gi568815596r:108796910_109031014 : 234105 bp : 43.82% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init -   6056   4378 1679  2  2   39   53   490 0.491  31.72
 1.00 Prom -   8382   8343   40                              -1.76

 2.00 Prom +  10122  10161   40                              -3.66
 2.01 Init +  13490  13495    6  1  0   39   69    11 0.682  -5.46
 2.02 Intr +  15722  15799   78  1  0   54  111    41 0.835   2.75
 2.03 Intr +  15911  16018  108  1  0   60  115    80 0.959   8.38
 2.04 Intr +  19032  19196  165  2  0   52   76    76 0.821   2.96
 2.05 Term +  19612  19665   54  0  0  116   51     6 0.577  -2.74
 2.06 PlyA +  21511  21516    6                               1.05

 3.03 PlyA -  21833  21828    6                               1.05
 3.02 Term -  39438  39375   64  2  1   48   44    85 0.602  -2.54
 3.01 Init -  43021  42963   59  1  2   80   97    50 0.861   5.88
 3.00 Prom -  86028  85989   40                              -2.96

 4.14 PlyA -  88634  88629    6                               1.05
 4.13 Term -  95075  94639  437  0  2   78   49    97 0.797   0.25
 4.12 Intr -  98804  98755   50  1  2   83   91    37 0.778   1.82
 4.11 Intr - 100320 100065  256  1  1   74   -9   402 0.590  25.60
 4.10 Intr - 109459 109399   61  1  1   71  121    96 0.786   9.51
 4.09 Intr - 111110 110951  160  1  1  130   60   256 0.538  26.99
 4.08 Intr - 113623 113551   73  2  1   98   87   127 0.892  12.06
 4.07 Intr - 113941 113867   75  2  0  112   62   115 0.992  10.79
 4.06 Intr - 114163 114038  126  2  0  113   66   269 0.992  27.85
 4.05 Intr - 115855 115769   87  2  0  109  100    32 0.871   6.44
 4.04 Intr - 126544 126459   86  0  2  124   82    91 0.976  11.56
 4.03 Intr - 132470 132289  182  2  2   85   94   292 0.993  28.17
 4.02 Intr - 133333 133211  123  1  0   73   95    85 0.894   8.48
 4.01 Init - 134105 134055   51  2  0   78  103    67 0.990   6.94
 4.00 Prom - 136403 136364   40                              -5.96

 5.03 PlyA - 137664 137659    6                               1.05
 5.02 Term - 139278 138981  298  2  1   73   47   186 0.753   7.74
 5.01 Init - 139446 139403   44  0  2   69  115    87 0.833   7.40
 5.00 Prom - 142250 142211   40                              -7.86

 6.08 PlyA - 143214 143209    6                               1.05
 6.07 Term - 143417 143298  120  2  0  107   38    94 0.693   4.77
 6.06 Intr - 145869 145725  145  2  1    4   43   107 0.253  -1.92
 6.05 Intr - 146902 146703  200  1  2   47   81   109 0.613   4.25
 6.04 Intr - 149272 149201   72  1  0   59   70    87 0.608   3.60
 6.03 Intr - 150864 150300  565  2  1   98   39    94 0.008  -1.70
 6.02 Intr - 164666 164568   99  1  0   90   42    55 0.001   0.33
 6.01 Init - 188621 188428  194  2  2   86   70   203 0.676  16.74
 6.00 Prom - 189060 189021   40                              -5.76

 7.08 PlyA - 189844 189839    6                               1.05
 7.07 Term - 195356 195279   78  2  0   50   49    98 0.120  -0.14
 7.06 Intr - 204248 204133  116  0  2   83   60    57 0.427   2.57
 7.05 Intr - 209044 208991   54  2  0  137   52    53 0.214   5.55
 7.04 Intr - 215551 215437  115  1  1   85   58    48 0.003   1.52
 7.03 Intr - 222049 221990   60  1  0   93   77    43 0.849   2.63
 7.02 Intr - 225008 224855  154  1  1   89  109    56 0.674   7.87
 7.01 Intr - 227581 227478  104  1  2   66   51   100 0.803   3.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_1|560_aa
MQGWFNIRKSINVIQHINRAKDKNHVIISTDAEKAFDKIQQPFMLKTLNKLGIDGTYFKI
IRAIYDKPTADIILNGQKLEAFPLKTGTRQGCLLSPLLFNIVLEVLARAIRQEKEIKGIQ
LGKEEVKLSLFADDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTNNRQT
ESHIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGR
INIVKMAILPKVIYRFNAIPIKLPMTFFTELEKPTLKFIWNQKRARIAKSILSQKNKAGA
ITLPDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHTYNYLIFDKPEKNKQWGKD
SLFNKWCWKNWLAICRKLKLDPFLTPYTKINSRWIKDLNVRPKTIKTLEENLGITIQDIG
VGKDFMSKTPKAMATKDKIDKWDLIKLKSFCTAKETTIRVNRQPTTWEKIFTTYSSDKGL
ISRIYNELKQIYKKKTNNPIKKWAKDMNRHFSKEDIYAAKKHMKKCSSSLAIREMQIKTT
MRYHLTPVRMAIIKKSGNNS

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_1|1680_bp
atgcaaggctggttcaatatacgcaaatcaataaatgtaatccagcatataaacagagcc
aaagacaaaaaccacgtgattatctcaacagatgcagaaaaagcctttgacaaaattcaa
caacccttcatgctgaaaactctcaataaattaggtattgatgggacgtatttcaaaata
ataagagctatctatgacaaacccacagccgatatcatactgaatgggcaaaaactggaa
gcattccctttgaaaactggcacaagacagggatgccttctctcaccactcctattcaac
atagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaaaggtattcag
ttaggaaaagaggaagtcaaattgtccctgtttgcagacgacatgattgtttatctagaa
aaccctatcgtctcagcccaaaatctccttaagctgataagcaacttcagcaaagtctca
ggatacaaaatcaatgtacaaaaatcacaagcattcttatacaccaacaacagacaaaca
gagagccacatcatgagtgaactcccattcacaattgcttcaaagagaataaaataccta
ggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctc
aaggaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaaga
atcaatatcgtgaaaatggccatactgcccaaggtaatttacagattcaatgccatcccc
atcaagctaccaatgactttcttcacagaattggaaaaacctactttaaagttcatatgg
aaccaaaaaagagcccgcatcgccaagtcaatcctaagccaaaagaacaaagctggagcc
atcacactacctgacttcaaactatactacaaggctacagtaaccaaaacagcatggtac
tggtaccaaaacagagatatagatcaatggaacagaacagagccctcagaaataacgccg
catacctacaactatctgatctttgacaaacctgagaaaaacaagcaatggggaaaggat
tccctatttaataaatggtgctggaaaaactggctagccatatgtagaaagctgaaactg
gatcccttccttacaccttatacaaaaatcaattcaagatggattaaagatttaaacgtt
agacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggc
gtgggcaaggacttcatgtccaaaacaccaaaagcaatggcaacaaaagacaaaattgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactaccatcagagtg
aacaggcaacctacaacatgggagaaaattttcacaacctactcatctgacaaagggcta
atatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatc
aaaaagtgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaa
aaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccact
atgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacagn

>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_2|136_aa
MILNEASEENRKIDIQAKRVQARLDNLQRKYEFMTIQRLKGSSHAVHEMKSLKQEKAPVS
KTYKVPLNGQVYELLTVFMDWISDHHLSKVKHEESGMDGKKPQLKFASQRNDIQEKCVKS
PEVMQGITWLGAECAS

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_2|411_bp
atgatcttaaatgaagcaagtgaagaaaacaggaagatagacattcaggctaaaagagtt
caagctcgtttagataatttacagaggaagtacgagtttatgacaatacagagattgaaa
ggaagttcccatgctgttcatgaaatgaaaagtttaaaacaagaaaaagcaccagtttca
aaaacttacaaggtaccacttaatgggcaagtttatgaacttttaactgtcttcatggac
tggatttcggatcatcatcttagcaaagtgaaacatgaagaatctggaatggatggtaaa
aaaccacaactcaaatttgcttcccagagaaatgatattcaggagaagtgtgtaaagagt
ccagaggtgatgcagggtatcacatggctgggggctgagtgtgctagctga

>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_3|40_aa
MTTLTIIFDILLETLANAIRKEGNPVTCYNMDEPYGYYAK

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_3|123_bp
atgactactctcaccatcatattcgacatactgctggaaactctagctaatgcaataaga
aaggaaggaaatcctgtcacatgctacaacatggacgaaccttatggatattatgctaag
tga

>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_4|588_aa
MAHVGDCTQTPWLPVLVVSLMCSARAEYSNCGENEYYNQTTGLCQECPPCGPGEEPYLSC
GYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVLTPGDMENDAECGPCLPGY
YMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGASANFPGTSGSSTLSPFQHAHKELSG
QGHLATALIIAMSTIFIMAIAIVLIIMFYILKTKPSAPACCTSHPGKSVEAQVSKDEEKK
EAPDNVVMFSEKDEFEKLTATPAKPTKSENDASSENEQLLSRSVDSDEEPAPDKQGSPEL
CLLSLVHLAREKSATSNKSAGIQSRRKKILDVYANVCGVVEGLSPTELPFDCLEKTSRML
SSTYNSEKAVVKTWRHLAESFGLKRDEIGGMTDGMQLFDRISTAGYSIPELLTKLVQIER
LDAVESFFSSANEMLVSDSIIGADRAHILGSWELCNSIHHLGYLSIFLGPMVGPKLPATI
TSPGTSLQVSPEGQEVVLPSPSQQPPTSMHTTWDPENRPATATAIAHAMPAAQRPKNPPT
HPIHCCHYQQLNKPPGGPEISLPNNCQQRCQLYSPGHKQAHLAHCCHH

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_4|1767_bp
atggcccatgtgggggactgcacgcagacgccctggctccccgtcctggtggtgtctctg
atgtgctcagcccgagcggaatactcaaactgcggtgagaacgagtactacaaccagact
acggggctgtgccaggagtgccccccgtgtgggccgggagaggagccctacctgtcctgt
ggctacggcaccaaagacgaggactacggctgcgtcccctgcccggcggagaagttttcc
aaaggaggctaccagatatgcaggcgtcacaaagactgtgagggcttcttccgggccacc
gtgctgacaccaggggacatggagaatgacgctgagtgtggcccttgcctccctggctac
tacatgctggagaacagaccgaggaacatctatggcatggtctgctactcctgcctcctg
gcaccccccaacaccaaggaatgtgtgggagccacttcaggagcttctgccaacttccct
ggcacctcgggcagcagcaccctgtctcccttccagcacgcccacaaagaactctcaggc
caaggacacctggccactgccctgatcattgcaatgtccaccatcttcatcatggccatc
gccatcgtcctcatcatcatgttctacatcctgaagacaaagccctctgccccagcctgt
tgcaccagccacccggggaagagcgtggaggcccaagtgagcaaggacgaggagaagaaa
gaggccccagacaacgtggtgatgttctccgagaaggatgaatttgagaagctgacagca
actccagcaaagcccaccaagagcgagaacgatgcctcatccgagaatgagcagctgctg
agccggagcgtcgacagtgatgaggagcccgcccctgacaagcagggctccccggagctg
tgcctgctgtcgctggttcacctggccagggagaagtctgccaccagcaacaagtcagcc
gggattcaaagccggaggaaaaagatcctcgatgtgtatgccaacgtgtgtggagtcgtg
gaaggtcttagccccacggagctgccatttgattgcctcgagaagactagccgaatgctc
agctccacgtacaactctgagaaggctgttgtgaaaacgtggcgccacctcgccgagagc
ttcggcctgaagagggatgagattgggggcatgacagacggcatgcaactctttgaccgc
atcagcacggcaggctacagcatccctgagctactcacaaaactggtgcagattgagcgg
ctggatgctgtggagtcctttttctcgtctgccaatgagatgttagttagtgattctata
attggggcagacagggcacatattctggggtcctgggaactgtgcaattcaatccaccac
cttgggtacctgagcatctttctggggcctatggttgggcctaaactcccagccaccatc
acatcacctggtacctccttgcaagtgtcacctgaaggccaagaggttgtcttacccagt
ccatcacagcaaccaccaacatcaatgcacaccacttgggacccagagaatcgtcctgct
actgctactgccattgctcatgctatgccagctgcccaaaggcccaaaaacccacctaca
cacccaatccattgctgccactaccagcaactgaacaagccacctggaggcccagaaatc
agcctgccaaataactgccaacagagatgccagctatacagccctgggcacaaacaggca
cacttagcccattgctgtcatcactag

>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_5|113_aa
MRSTQAWQALLGQARYEVWPFQGEAFGRGSTVTVKGGPTGWKNGKSRRLDHLPAEAVTLL
LLKVVTSREDGHLLPAVGTVCALEAAVMTSIDSQSHTTKGEGHSKRRAAQRGD

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_5|342_bp
atgcggtcaacccaggcgtggcaagccctgctgggccaggccagatatgaggtgtggccc
tttcagggagaagcttttggaagaggtagcaccgtcacagtcaaggggggcccaactggg
tggaagaatgggaagtcccggaggctggaccatctgccagccgaggcagtgactctgctt
ctcctaaaggtggtgaccagtagggaggacggccaccttcttcctgcagtgggcactgtc
tgtgctctggaggcagccgtgatgacaagtatagacagtcaaagccacaccaccaagggt
gaaggccattccaagaggcgagcagctcagagaggagactga

>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_6|464_aa
MPLFSISEKTEDYGKQVGRKEPYRGRCTCGGSPACTTLRAHASLTHFTVNQTYCSKHSRK
ARLHLTSITKRAVQPSACKSDVGSGNQELYLPLKRAWLPGGLGGKNGFMGPVQPQDLASC
IPATPAPAAAKRGQGTAQAIASEGASPKPWQLPLGVGTAGVQKTRIELWESPPRFQSMYE
NAWMSRQKSTAGVKPSWRTSTKAMQLEPPHRVPTGALPSGAVRRAPPFSRPENGRSTDSL
HHALGKSTGTQHQPMKAVTGAVPCRATEAELSKAMGAHPLHQHALDLLTAAGTHSEHISQ
GVDDCQEEGLPEVCCGATQSILEKGGVLSPMDSSPPNWRADTSHQERAKKGWLLLLNTPG
HGKYAESSLWTFCCARKARTFVRVQMARVVPGSEAGFVVKGEAGTGTRWNRRAPAVLKGL
WRGKQTIRAILGGSASTTHVGTFCITYNSQPERSSKPSAGPRDT

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_6|1395_bp
atgcctttgttttccatttccgagaaaacagaggactatggaaaacaggtgggccgtaag
gagccctacagaggaagatgcacctgtggcggtagccctgcctgcaccaccctgcgagct
catgccagcttaactcacttcacggtcaatcagacctactgctccaaacacagtaggaag
gcgcgccttcacttaacgtccataaccaaaagagcagttcaaccttcagcatgtaaatct
gatgtaggcagcgggaaccaggagctctacctccctctgaagagggcctggctacccgga
ggcctgggagggaaaaatggtttcatgggccctgtgcagccccaggacttggcatcctgc
atcccagccactccagctccagctgcagctaaaaggggccaaggtacagctcaggccatt
gcttcagagggtgcaagtcccaagccttggcaacttccacttggtgttgggactgcgggg
gtgcagaagacaagaattgagctttgggagtctccacctagatttcagagtatgtatgaa
aatgcctggatgtccaggcagaagtctactgcaggggtgaagccctcatggagaacctct
accaaggcaatgcagttggagcccccacacagagtccccactggggcactgcctagtgga
gctgtgagacgagcaccaccattttccagacccgagaatggtagatccaccgacagcttg
caccatgcacttggaaaatccacaggcactcaacaccagcccatgaaagcagttacagga
gctgtaccctgcagagccacagaggcagagctgtccaaagccatgggagcccaccccttg
catcagcatgccctggatctcctcacagctgctgggacacactccgagcacatctcacag
ggtgtggacgactgccaggaggaggggctgcctgaggtgtgctgcggagcaacacagagc
atcctggagaaaggaggggtgctcagccccatggattcatctcccccaaactggagagca
gacaccagccaccaagaaagagccaagaaaggatggctgctgttactcaacacaccaggc
cacggaaaatacgcggagtcttcgctctggacattctgttgtgctcggaaggcacgaacc
ttcgtgagagtccagatggccagggtggtgcctgggagcgaagctggcttcgtggtaaaa
ggagaggcgggaacaggaacgcgctggaaccgcagggctcccgccgtcttgaaaggcctc
tggcgtggaaagcagaccatccgagccatcctgggaggctcagcctccaccacccatgtg
ggcaccttctgcattacctacaatagccagcctgagaggagcagcaagccctctgcaggc
cctcgggacacgtaa

>gi568815596r:108796910_109031014|GENSCAN_predicted_peptide_7|226_aa
NFCKGGFNPNIFCSGIYLQSFEIFDSSREKIQRDWALLNPWWKVKNRASQILFSGKTILK
AILFGFLNRYLSASAVFFLRTSGDAQMFTEGMLRVTTVLVLGTRSVGWGEKERGRRFKVD
SVGALKTEGCQVRLKTEPPLGIRGAEHMGSSTTPKPWELDKGAQLIPLGFSYTSHSCSNE
TLSTLADKEKVIRTKQETYNGQLEQYRHVEDVTCICCMNKHMNMMA

>gi568815596r:108796910_109031014|GENSCAN_predicted_CDS_7|681_bp
aatttttgcaaaggtggtttcaaccccaacatcttctgttcaggaatctacctgcaaagt
tttgagattttcgacagtagccgtgaaaagattcaaagagactgggcacttctcaatccc
tggtggaaggtgaaaaatcgtgcctcacagattctcttctcaggaaagacaatcctgaaa
gcgattttgttcggatttcttaaccgctatttgtctgcttctgctgtcttctttttaagg
acctcgggggatgcccagatgtttactgagggcatgctacgtgtcaccactgtcctggtg
ctagggacacgatcagtgggctggggggaaaaggagcgtgggaggagattcaaggtagat
tctgtgggggctctcaagaccgaaggatgccaggtacgcctgaagacagagccaccgctg
ggaatcaggggcgctgaacacatgggcagctccacgactccgaagccctgggaattggat
aaaggcgcacagttgattcctttaggattttcttatacgagccactcatgtagcaatgaa
actctgagcacccttgctgataaggagaaagttatcagaaccaaacaggaaacctacaat
gggcaactggaacagtaccggcacgtagaagacgtgacgtgcatttgctgcatgaataaa
cacatgaacatgatggcatag