Result of FASTA (omim) for pF1KB6456
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6456, 351 aa
  1>>>pF1KB6456 351 - 351 aa - 351 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0862+/-0.000407; mu= 17.5390+/- 0.026
 mean_var=61.6119+/-12.472, 0's: 0 Z-trim(109.8): 25  B-trim: 325 in 1/52
 Lambda= 0.163396
 statistics sampled from 17978 (17991) to 17978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.211), width:  16
 Scan time:  7.050

The best scores are:                                      opt bits E(85289)
NP_056528 (OMIM: 604712,612075,613077) ribonucleos ( 351) 2328 557.6 1.5e-158
NP_001165948 (OMIM: 604712,612075,613077) ribonucl ( 423) 2220 532.2 7.9e-151
NP_001165949 (OMIM: 604712,612075,613077) ribonucl ( 299) 1877 451.3 1.3e-126
NP_001025 (OMIM: 180390) ribonucleoside-diphosphat ( 389) 1861 447.5 2.2e-125
NP_001159403 (OMIM: 180390) ribonucleoside-diphosp ( 449) 1861 447.6 2.5e-125


>>NP_056528 (OMIM: 604712,612075,613077) ribonucleoside-  (351 aa)
 initn: 2328 init1: 2328 opt: 2328  Z-score: 2967.7  bits: 557.6 E(85289): 1.5e-158
Smith-Waterman score: 2328; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351)

               10        20        30        40        50        60
pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS
              250       260       270       280       290       300

              310       320       330       340       350 
pF1KB6 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF
       :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF
              310       320       330       340       350 

>>NP_001165948 (OMIM: 604712,612075,613077) ribonucleosi  (423 aa)
 initn: 2214 init1: 2214 opt: 2220  Z-score: 2828.9  bits: 532.2 E(85289): 7.9e-151
Smith-Waterman score: 2220; 97.1% identity (97.7% similar) in 349 aa overlap (3-351:81-423)

                                           10        20        30  
pF1KB6                             MGDPERPEAAGLDQDERSSSDTNESEIKSNEE
                                     :  ::.:.      ::::::::::::::::
NP_001 RGGRPRGGRRKELTLGLRPARCSAPGPAKDDAWRPQAG------RSSSDTNESEIKSNEE
               60        70        80              90       100    

             40        50        60        70        80        90  
pF1KB6 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI
          110       120       130       140       150       160    

            100       110       120       130       140       150  
pF1KB6 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKR
          170       180       190       200       210       220    

            160       170       180       190       200       210  
pF1KB6 EFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG
          230       240       250       260       270       280    

            220       230       240       250       260       270  
pF1KB6 LMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV
          290       300       310       320       330       340    

            280       290       300       310       320       330  
pF1KB6 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQ
          350       360       370       380       390       400    

            340       350 
pF1KB6 RFAVMAETTDNVFTLDADF
       :::::::::::::::::::
NP_001 RFAVMAETTDNVFTLDADF
          410       420   

>>NP_001165949 (OMIM: 604712,612075,613077) ribonucleosi  (299 aa)
 initn: 1876 init1: 1876 opt: 1877  Z-score: 2394.1  bits: 451.3 E(85289): 1.3e-126
Smith-Waterman score: 1877; 96.6% identity (98.3% similar) in 295 aa overlap (57-351:5-299)

         30        40        50        60        70        80      
pF1KB6 IKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEK
                                     .. .:.    .:::::::::::::::::::
NP_001                           MGDPERPEAAGLDQDEVDLSKDLPHWNKLKADEK
                                         10        20        30    

         90       100       110       120       130       140      
pF1KB6 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI
           40        50        60        70        80        90    

        150       160       170       180       190       200      
pF1KB6 RDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIF
          100       110       120       130       140       150    

        210       220       230       240       250       260      
pF1KB6 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFL
          160       170       180       190       200       210    

        270       280       290       300       310       320      
pF1KB6 TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEK
          220       230       240       250       260       270    

        330       340       350 
pF1KB6 RVSEYQRFAVMAETTDNVFTLDADF
       :::::::::::::::::::::::::
NP_001 RVSEYQRFAVMAETTDNVFTLDADF
          280       290         

>>NP_001025 (OMIM: 180390) ribonucleoside-diphosphate re  (389 aa)
 initn: 1861 init1: 1861 opt: 1861  Z-score: 2372.1  bits: 447.5 E(85289): 2.2e-125
Smith-Waterman score: 1861; 83.8% identity (96.3% similar) in 321 aa overlap (31-351:69-389)

               10        20        30        40        50        60
pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ
                                     .:::::.. ::::::::.: :::.:::.:.
NP_001 GTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAE
       40        50        60        70        80        90        

               70        80        90       100       110       120
pF1KB6 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA
       ::::::::::::::. ::..:: .:.:::::.::::::::::::::::::::::::. ::
NP_001 ASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA
      100       110       120       130       140       150        

              130       140       150       160       170       180
pF1KB6 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK
       :::::::: .::.:::::::::::::.:::.:::::::::::: ::::::::::::.:..
NP_001 RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKE
      160       170       180       190       200       210        

              190       200       210       220       230       240
pF1KB6 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ
       .:.::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::.
NP_001 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK
      220       230       240       250       260       270        

              250       260       270       280       290       300
pF1KB6 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS
       .::.:::::::::::..::.:::::::::::: :::::: :::::::::::::..:::::
NP_001 HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS
      280       290       300       310       320       330        

              310       320       330       340       350 
pF1KB6 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF
       :::..:::::::::::::::::::::::.::::..::.  :.: :::::::
NP_001 KVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
      340       350       360       370       380         

>>NP_001159403 (OMIM: 180390) ribonucleoside-diphosphate  (449 aa)
 initn: 1861 init1: 1861 opt: 1861  Z-score: 2371.1  bits: 447.6 E(85289): 2.5e-125
Smith-Waterman score: 1861; 83.8% identity (96.3% similar) in 321 aa overlap (31-351:129-449)

               10        20        30        40        50        60
pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ
                                     .:::::.. ::::::::.: :::.:::.:.
NP_001 GTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAE
      100       110       120       130       140       150        

               70        80        90       100       110       120
pF1KB6 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA
       ::::::::::::::. ::..:: .:.:::::.::::::::::::::::::::::::. ::
NP_001 ASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA
      160       170       180       190       200       210        

              130       140       150       160       170       180
pF1KB6 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK
       :::::::: .::.:::::::::::::.:::.:::::::::::: ::::::::::::.:..
NP_001 RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKE
      220       230       240       250       260       270        

              190       200       210       220       230       240
pF1KB6 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ
       .:.::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::.
NP_001 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK
      280       290       300       310       320       330        

              250       260       270       280       290       300
pF1KB6 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS
       .::.:::::::::::..::.:::::::::::: :::::: :::::::::::::..:::::
NP_001 HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS
      340       350       360       370       380       390        

              310       320       330       340       350 
pF1KB6 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF
       :::..:::::::::::::::::::::::.::::..::.  :.: :::::::
NP_001 KVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF
      400       410       420       430       440         




351 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:46:16 2016 done: Sat Nov  5 16:46:17 2016
 Total Scan time:  7.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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