FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6456, 351 aa 1>>>pF1KB6456 351 - 351 aa - 351 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0862+/-0.000407; mu= 17.5390+/- 0.026 mean_var=61.6119+/-12.472, 0's: 0 Z-trim(109.8): 25 B-trim: 325 in 1/52 Lambda= 0.163396 statistics sampled from 17978 (17991) to 17978 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.211), width: 16 Scan time: 7.050 The best scores are: opt bits E(85289) NP_056528 (OMIM: 604712,612075,613077) ribonucleos ( 351) 2328 557.6 1.5e-158 NP_001165948 (OMIM: 604712,612075,613077) ribonucl ( 423) 2220 532.2 7.9e-151 NP_001165949 (OMIM: 604712,612075,613077) ribonucl ( 299) 1877 451.3 1.3e-126 NP_001025 (OMIM: 180390) ribonucleoside-diphosphat ( 389) 1861 447.5 2.2e-125 NP_001159403 (OMIM: 180390) ribonucleoside-diphosp ( 449) 1861 447.6 2.5e-125 >>NP_056528 (OMIM: 604712,612075,613077) ribonucleoside- (351 aa) initn: 2328 init1: 2328 opt: 2328 Z-score: 2967.7 bits: 557.6 E(85289): 1.5e-158 Smith-Waterman score: 2328; 100.0% identity (100.0% similar) in 351 aa overlap (1-351:1-351) 10 20 30 40 50 60 pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 250 260 270 280 290 300 310 320 330 340 350 pF1KB6 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF ::::::::::::::::::::::::::::::::::::::::::::::::::: NP_056 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 310 320 330 340 350 >>NP_001165948 (OMIM: 604712,612075,613077) ribonucleosi (423 aa) initn: 2214 init1: 2214 opt: 2220 Z-score: 2828.9 bits: 532.2 E(85289): 7.9e-151 Smith-Waterman score: 2220; 97.1% identity (97.7% similar) in 349 aa overlap (3-351:81-423) 10 20 30 pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEE : ::.:. :::::::::::::::: NP_001 RGGRPRGGRRKELTLGLRPARCSAPGPAKDDAWRPQAG------RSSSDTNESEIKSNEE 60 70 80 90 100 40 50 60 70 80 90 pF1KB6 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHI 110 120 130 140 150 160 100 110 120 130 140 150 pF1KB6 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKR 170 180 190 200 210 220 160 170 180 190 200 210 pF1KB6 EFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRG 230 240 250 260 270 280 220 230 240 250 260 270 pF1KB6 LMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPV 290 300 310 320 330 340 280 290 300 310 320 330 pF1KB6 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQ 350 360 370 380 390 400 340 350 pF1KB6 RFAVMAETTDNVFTLDADF ::::::::::::::::::: NP_001 RFAVMAETTDNVFTLDADF 410 420 >>NP_001165949 (OMIM: 604712,612075,613077) ribonucleosi (299 aa) initn: 1876 init1: 1876 opt: 1877 Z-score: 2394.1 bits: 451.3 E(85289): 1.3e-126 Smith-Waterman score: 1877; 96.6% identity (98.3% similar) in 295 aa overlap (57-351:5-299) 30 40 50 60 70 80 pF1KB6 IKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEK .. .:. .::::::::::::::::::: NP_001 MGDPERPEAAGLDQDEVDLSKDLPHWNKLKADEK 10 20 30 90 100 110 120 130 140 pF1KB6 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYI 40 50 60 70 80 90 150 160 170 180 190 200 pF1KB6 RDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIF 100 110 120 130 140 150 210 220 230 240 250 260 pF1KB6 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFL 160 170 180 190 200 210 270 280 290 300 310 320 pF1KB6 TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEK 220 230 240 250 260 270 330 340 350 pF1KB6 RVSEYQRFAVMAETTDNVFTLDADF ::::::::::::::::::::::::: NP_001 RVSEYQRFAVMAETTDNVFTLDADF 280 290 >>NP_001025 (OMIM: 180390) ribonucleoside-diphosphate re (389 aa) initn: 1861 init1: 1861 opt: 1861 Z-score: 2372.1 bits: 447.5 E(85289): 2.2e-125 Smith-Waterman score: 1861; 83.8% identity (96.3% similar) in 321 aa overlap (31-351:69-389) 10 20 30 40 50 60 pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ .:::::.. ::::::::.: :::.:::.:. NP_001 GTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAE 40 50 60 70 80 90 70 80 90 100 110 120 pF1KB6 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA ::::::::::::::. ::..:: .:.:::::.::::::::::::::::::::::::. :: NP_001 ASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA 100 110 120 130 140 150 130 140 150 160 170 180 pF1KB6 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK :::::::: .::.:::::::::::::.:::.:::::::::::: ::::::::::::.:.. NP_001 RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKE 160 170 180 190 200 210 190 200 210 220 230 240 pF1KB6 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ .:.::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::. NP_001 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK 220 230 240 250 260 270 250 260 270 280 290 300 pF1KB6 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS .::.:::::::::::..::.:::::::::::: :::::: :::::::::::::..::::: NP_001 HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS 280 290 300 310 320 330 310 320 330 340 350 pF1KB6 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF :::..:::::::::::::::::::::::.::::..::. :.: ::::::: NP_001 KVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 340 350 360 370 380 >>NP_001159403 (OMIM: 180390) ribonucleoside-diphosphate (449 aa) initn: 1861 init1: 1861 opt: 1861 Z-score: 2371.1 bits: 447.6 E(85289): 2.5e-125 Smith-Waterman score: 1861; 83.8% identity (96.3% similar) in 321 aa overlap (31-351:129-449) 10 20 30 40 50 60 pF1KB6 MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ .:::::.. ::::::::.: :::.:::.:. NP_001 GTRVLASKTARRIFQEPTEPKTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAE 100 110 120 130 140 150 70 80 90 100 110 120 pF1KB6 ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA ::::::::::::::. ::..:: .:.:::::.::::::::::::::::::::::::. :: NP_001 ASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEA 160 170 180 190 200 210 130 140 150 160 170 180 pF1KB6 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK :::::::: .::.:::::::::::::.:::.:::::::::::: ::::::::::::.:.. NP_001 RCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKE 220 230 240 250 260 270 190 200 210 220 230 240 pF1KB6 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ .:.::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::. NP_001 ATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFK 280 290 300 310 320 330 250 260 270 280 290 300 pF1KB6 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS .::.:::::::::::..::.:::::::::::: :::::: :::::::::::::..::::: NP_001 HLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFS 340 350 360 370 380 390 310 320 330 340 350 pF1KB6 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF :::..:::::::::::::::::::::::.::::..::. :.: ::::::: NP_001 KVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTENSFTLDADF 400 410 420 430 440 351 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 16:46:16 2016 done: Sat Nov 5 16:46:17 2016 Total Scan time: 7.050 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]