GENSCAN 1.0	Date run:  5-Nov-116	Time: 16:37:36

Sequence gi568815595r:182845097_183065754 : 220658 bp : 39.07% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +   1537   1576   40                              -1.95
 1.01 Init +   7711   7760   50  0  2   43   64    90 0.554   2.57
 1.02 Intr +  12782  12932  151  2  1  106   63    28 0.642   1.34
 1.03 Intr +  14066  14263  198  1  0   95   67    75 0.674   4.73
 1.04 Intr +  20360  20602  243  1  0  100   94   168 0.999  15.37
 1.05 Intr +  21172  21347  176  0  2   62   86   213 0.826  16.32
 1.06 Intr +  23982  24055   74  0  2   81   91    61 0.999   3.83
 1.07 Intr +  24132  24235  104  1  2  124   97    32 0.997   6.67
 1.08 Intr +  27260  27441  182  1  2   91  111   187 0.999  19.04
 1.09 Intr +  28716  28919  204  0  0  108  116   220 0.967  24.19
 1.10 Intr +  53511  53676  166  0  1  120   91    64 0.897   8.94
 1.11 Term +  60698  60823  126  1  0  108   43    82 0.702   3.00
 1.12 PlyA +  62679  62684    6                               1.05

 2.12 PlyA -  63501  63496    6                               1.05
 2.11 Term -  66894  66773  122  1  2   67   32   138 0.223   3.76
 2.10 Intr - 100077 100012   66  1  0  118   21    58 0.007   0.06
 2.09 Intr - 102238 102142   97  1  1   71   90   115 0.997   8.66
 2.08 Intr - 102536 102454   83  0  2   63  111    14 0.161  -0.36
 2.07 Intr - 116260 116130  131  0  2   63   82   147 0.986  11.02
 2.06 Intr - 118953 118785  169  1  1   67   96   161 0.999  12.88
 2.05 Intr - 120657 120441  217  0  1   48  113   157 0.982  11.35
 2.04 Intr - 134541 134361  181  2  1   41   32   108 0.269  -0.55
 2.03 Intr - 135543 135391  153  2  0   70   77    99 0.892   5.27
 2.02 Intr - 135790 135739   52  2  1   77   59    76 0.662   0.65
 2.01 Init - 136757 136634  124  2  1   63   91    52 0.564   3.39
 2.00 Prom - 139941 139902   40                              -7.75

 3.00 Prom + 141178 141217   40                              -1.85
 3.01 Sngl + 146323 146511  189  0  0   93   34   135 0.874   3.46
 3.02 PlyA + 146955 146960    6                               1.05

 4.05 PlyA - 147264 147259    6                               1.05
 4.04 Term - 155527 155058  470  2  2    1   41   324 0.218  13.15
 4.03 Intr - 160706 160564  143  1  2   54  115    66 0.858   4.98
 4.02 Intr - 162230 162113  118  0  1   -4   97   108 0.203   1.10
 4.01 Init - 167552 167537   16  2  1   59   89    24 0.312   0.00
 4.00 Prom - 168713 168674   40                              -5.05

 5.14 PlyA - 168840 168835    6                               1.05
 5.13 Term - 170470 170342  129  1  0   73   37   145 0.881   5.10
 5.12 Intr - 172241 172170   72  2  0   27   94    87 0.020   1.88
 5.11 Intr - 175141 175034  108  1  0  102   84    87 0.054   9.26
 5.10 Intr - 177458 177321  138  2  0   97   90    60 0.736   6.84
 5.09 Intr - 180708 180659   50  1  2   64  115    42 0.580   1.98
 5.08 Intr - 188981 188895   87  0  0   57   98    39 0.429   0.82
 5.07 Intr - 192338 192122  217  2  1   58   56   214 0.984  12.35
 5.06 Intr - 194039 193930  110  0  2   46   82   115 0.997   5.78
 5.05 Intr - 196654 196471  184  1  1   18   98   195 0.985  11.94
 5.04 Intr - 200444 200317  128  0  2  111   33    86 0.748   4.88
 5.03 Intr - 207144 207063   82  0  1   39   96    67 0.760   0.89
 5.02 Intr - 212326 212215  112  0  1   65   91   133 0.950  10.76
 5.01 Init - 219704 219469  236  2  2  111    6   444 0.417  34.16
 5.00 Prom - 220290 220251   40                              -2.15


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 100077  99998   80  1  2  118   42    68 0.980   2.15


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:182845097_183065754|GENSCAN_predicted_peptide_1|557_aa
MYGKGTTKIDSLNFIEMSMNTFLIIYLVILISEAVISTILKYTWQAEEKWDEPWYNQKTE
HQRNSSKILRFISDFLAFLVLYNFIIPISLYVTVEMQKFLGSFFIGWDLDLYHEESDQKA
QVNTSDLNEELGQVEYVFTDKTGTLTENEMQFRECSINGMKYQEINGRLVPEGPTPDSSE
GNLSYLSSLSHLNNLSHLTTSSSFRTSPENETELIKEHDLFFKAVSLCHTVQISNVQTDC
TGDGPWQSNLAPSQLEYYASSPDEKALVEAAARYKLLHILEFDSDRRRMSVIVQAPSGEK
LLFAKGAESSILPKCIGGEIEKTRIHVDEFALKGLRTLCIAYRKFTSKEYEEIDKRIFEA
RTALQQREEKLAAVFQFIEKDLILLGATAVEDRLQDKVRETIEALRMAGIKVWVLTGDKH
ETAVSVSLSCGHFHRTMNILELINQKSDSECAEQLRQLARRPFLGSQNMYFVFIQLLSSG
SAWFAIILMVVTCLFLDIIKKVFDRHLHPTSTEKAQMEEDKGSVSSAYEFAESQHRGEDS
RHLLAEACSQQDSCCVH

>gi568815595r:182845097_183065754|GENSCAN_predicted_CDS_1|1674_bp
atgtacggaaaaggaaccaccaaaattgatagcttaaacttcatcgaaatgtcaatgaat
acatttttgataatttatctagtaattcttatatctgaagctgtcatcagcactatcttg
aagtatacatggcaagctgaagaaaaatgggatgaaccttggtataaccaaaaaacagaa
catcaaagaaatagcagtaagattctgagatttatttcagacttccttgcttttttggtt
ctctacaatttcatcattccaatttcattatatgtgacagtcgaaatgcagaaatttctt
ggatcattttttattggctgggatcttgatctgtatcatgaagaatcagatcagaaagct
caagtcaatacttccgatctgaatgaagagcttggacaggtagagtacgtgtttacagat
aaaactggtacactgacagaaaatgagatgcagtttcgggaatgttcaattaatggcatg
aaataccaagaaattaatggtagacttgtacccgaaggaccaacaccagactcttcagaa
ggaaacttatcttatcttagtagtttatcccatcttaacaacttatcccatcttacaacc
agttcctctttcagaaccagtcctgaaaatgaaactgaactaattaaagaacatgatctc
ttctttaaagcagtcagtctctgtcacactgtacagattagcaatgttcaaactgactgc
actggtgatggtccctggcaatccaacctggcaccatcgcagttggagtactatgcatct
tcaccagatgaaaaggctctagtagaagctgctgcaaggtacaaactgcttcatattctg
gaatttgattcagatcgtaggagaatgagtgtaattgttcaggcaccttcaggtgagaag
ttattatttgctaaaggagctgagtcatcaattctccctaaatgtataggtggagaaata
gaaaaaaccagaattcatgtagatgaatttgctttgaaagggctaagaactctgtgtata
gcatatagaaaatttacatcaaaagagtatgaggaaatagataaacgcatatttgaagcc
aggactgccttgcagcagcgggaagagaaattggcagctgttttccagttcatagagaaa
gacctgatattacttggagccacagcagtagaagacagactacaagataaagttcgagaa
actattgaagcattgagaatggctggtatcaaagtatgggtacttactggggataaacat
gaaacagctgttagtgtgagtttatcatgtggccattttcatagaaccatgaacatcctt
gaacttataaaccagaaatcagacagcgagtgtgctgaacaattgaggcagcttgccaga
aggccatttttgggctcccagaatatgtattttgtgtttattcagctcctgtcaagtggt
tctgcttggtttgccataatcctcatggttgttacatgtctatttcttgatatcataaag
aaggtctttgaccgacacctccaccctacaagtactgaaaaggcacagatggaagaagat
aagggttcagtcagctcagcatatgaatttgctgaaagccagcacagaggggaggacagt
aggcacctgctagctgaggcttgcagccagcaggacagttgttgcgtgcactag

>gi568815595r:182845097_183065754|GENSCAN_predicted_peptide_2|464_aa
MDERFVAARNLPWYSAGRSQYMASSRKLGGLWELPKKFCCFACVDPAVVVRKEPRRKRRS
GAASSGRAGPPRTAHEREPGKPVRGAAAAAAVHSLRSRRRRGEAWRTPTCLSSYSPFLFG
GGKKSSPGLQTLVVELFTLVIKYLTLLDALRVSEALFGIVQSERELNSVQNKLKSSQKDK
VRQFMIFTQSSEKTAVSCLSQNDWKLDVATDNFFQNPELYIRESVKGSLDRKKLEQLYNR
YKDPQDENKIGIDGIQQFCDDLALDPASISVLIIAWKFRAATQCEFSKQEFMDGMTELGC
DSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDLEMAIAYWNLVLNGRFK
FLDLWNKFLLEHHKRSIPKDTWNLLLDFSTMIADDMSNYDEEGAWPVLIDDFVEFARPQI
AGTKISTPANQCSLPVGNVSGPAINQGQNADPYISVQLKSYRLH

>gi568815595r:182845097_183065754|GENSCAN_predicted_CDS_2|1395_bp
atggatgaacggtttgtggccgccagaaacctgccttggtacagcgctgggcgctcccag
tacatggctagctccaggaagttaggaggcctttgggagttaccaaagaagttctgttgt
tttgcctgcgtagacccggccgtggtcgtccggaaggaaccgcgtaggaaacggaggtcc
ggggctgcctcctcgggccgcgccgggccgccccgcactgcgcatgagcgggagccgggc
aagcccgtgagaggagccgccgccgccgccgccgtccattcgctgcggagccggaggagg
aggggagaggcctggaggacaccaacatgtttgtcaagttactctccttttttgtttggg
ggggggaaaaagtcctctccaggcttgcagacccttgtggtcgagttgtttactttggta
attaagtacctgactctgctggacgctcttcgcgtttcagaagcgctgtttggcattgta
cagtctgagcgtgagttgaattccgtgcagaacaagttgaaatcatcgcagaaggataaa
gttcgtcagtttatgatcttcacacaatctagtgaaaaaacagcagtaagttgtctttct
caaaatgactggaagttagatgttgcaacagataattttttccaaaatcctgaactttat
atacgagagagtgtaaaaggatcattggacaggaagaagttagaacagctgtacaataga
tacaaagaccctcaagatgagaataaaattggaatagatggcatacagcagttctgtgat
gacctggcactcgatccagccagcattagtgtgttgattattgcgtggaagttcagagca
gcaacacagtgcgagttctccaaacaggagttcatggatggcatgacagaattaggatgt
gacagcatagaaaaactaaaggcccagatacccaagatggaacaagaattgaaagaacca
ggacgatttaaggatttttaccagtttacttttaattttgcaaagaatccaggacaaaaa
ggattagatctagaaatggccattgcctactggaacttagtgcttaatggaagatttaaa
ttcttagacttatggaataaatttttgttggaacatcataaacgatcaataccaaaagac
acttggaatcttcttttagacttcagtacgatgattgcagatgacatgtctaattatgat
gaagaaggagcatggcctgttcttattgatgactttgtggaatttgcacgccctcaaatt
gctgggacaaaaatctccactccagccaaccaatgttccctgcctgtgggcaacgtgtcg
gggcctgccatcaatcagggtcagaatgctgacccctacatcagcgttcagcttaaatcc
taccgtctccattaa

>gi568815595r:182845097_183065754|GENSCAN_predicted_peptide_3|62_aa
MTASASEEASGNFSSWQKANWEQVPYMTGAEPSSVGRCQTRLNNQISRELTIIITKGETP
PT

>gi568815595r:182845097_183065754|GENSCAN_predicted_CDS_3|189_bp
atgacggcttctgcttctgaagaggcctcaggaaacttttcctcatggcagaaggcaaac
tgggagcaggtgccttacatgacaggagcagaaccaagcagtgtggggaggtgccaaaca
cgtttaaacaaccagatctcacgagaacttactatcatcatcaccaaaggggaaaccccc
ccaacatga

>gi568815595r:182845097_183065754|GENSCAN_predicted_peptide_4|248_aa
MEKEGGSPGPAAAALPAKLLEMQILSPTLHLLHQNLGGEAQQDVRKDGKGAQGEGADGEN
KNKAASQAEVSPSSGGPLLGNSTTNYFPCPMKETSALGELTDLNSAGRSCPSDRASWTRA
LLDLLALSDGPQPGYVCLQVSFRCPGGPHHRFCAGGLCVTGGELQRGGPYSHTPAHTLPT
QTAASLGSAAAPHITLLARVCLGGFCIPRPASVGMQPLPIPPLITIAIGALANTEPASPA
PVSTPPLH

>gi568815595r:182845097_183065754|GENSCAN_predicted_CDS_4|747_bp
atggagaaagaaggtggtagtccagggccagcagcagcagcactacctgcgaagttatta
gaaatgcaaattctcagccccaccctacatctcctgcatcagaatcttgggggtgaggct
cagcaagacgtccgaaaggacgggaaaggtgcacagggtgaaggggcagatggggaaaat
aaaaacaaagcagcaagccaagctgaggtatcacccagctctggtggtccactgctggga
aactcaaccaccaactactttccatgccccatgaaagagacttctgccctaggggaactg
acggacctgaattctgcagggcggtcttgtccatcagacagggccagttggacccgagca
ctccttgatctgctggcactgtctgatgggccccagcctggctacgtctgcttgcaagtc
agcttcaggtgccctgggggcccacaccatagattctgtgctggtggactgtgtgtgact
ggtggagagctccagaggggtggcccctacagccacacaccagcccacacactccctacc
caaactgcagcttccctggggtccgcggcagctccccacatcactttgctggcacgtgtc
tgcctgggtgggttttgcattcctcgccctgccagtgtgggaatgcagccacttcccatt
cccccactgatcaccattgcaatcggagccttggcgaacacagagcccgccagcccagcc
cctgtcagcaccccacccttgcactaa

>gi568815595r:182845097_183065754|GENSCAN_predicted_peptide_5|550_aa
MALRRLLPVLHPYITRFALLSTEPAAREQPAVGPAAMPGRGSAEAVWPPVPAVDFGNAQE
AYRSRRTGELACSPLVLHLHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIK
SEVRKKLGEAAVRAAKAVNYVGAGTVEFIMDSKHNFCFMEMNTRLQVEHPVTEMITGTDL
VEWQLRIAAGEKIPLSQEEITLQGHAFEARIYAEDPSNNFMPVAGPLVHLSTPRADPSTR
IETGVRQGDEVSVHYDPMIAKLVVWAADRQAALTKLRYSLRQYNIVGLHTNIDFLLNLSG
HPEFEAGNVHTDFIPQHHKQLLLSRKAAAKESLCQAALGLILKEKAMTDTFTLQAHDQFS
PFSSSSGRRLNISYTRNMTLKDGKNNVAIAVTYNHDGSYSMQIEDKTFQVLGNLYSEGDC
TYLKCSVNGVASKAKLIILENTIYLFSKEGSIEIDIPVPKYLSSVSSQETQGGPLAPMTG
TIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFE
EEESDKRESE

>gi568815595r:182845097_183065754|GENSCAN_predicted_CDS_5|1653_bp
atggctctgaggcgcctcctgccggtgctgcacccctacattacccgcttcgccctgctg
tccacggagccggctgcccgcgaacagcctgccgtgggcccagcagccatgccaggacgt
gggtcggccgaggcagtgtggccgccggtgcccgcagtggacttcggcaacgcgcaggag
gcgtaccgcagccggcgaaccggggagctggcgtgcagcccgctggtgctgcacttgcat
gtagaagtccaggtgtttggtgatcaccatggcaatgctgtgtacttgtttgaaagagac
tgtagtgtgcagaggcgacatcagaagatcattgaggaggccccagcgcctggtattaaa
tctgaagtaagaaaaaagctgggagaagctgcagtcagagctgctaaagctgtaaattat
gttggagcagggactgtggagtttattatggactcaaaacataatttctgtttcatggag
atgaatacaaggctgcaagtggaacatcctgttactgagatgatcacaggaactgacttg
gtggagtggcagcttagaattgcagcaggagagaagattcctttgagccaggaagaaata
actctgcagggccatgccttcgaagctagaatatatgcagaagatcctagcaataacttc
atgcctgtggcaggcccattagtgcacctctctactcctcgagcagacccttccaccagg
attgaaactggagtacggcaaggagacgaagtttccgtgcattatgaccccatgattgcg
aagctggtcgtgtgggcagcagatcgccaggcggcattgacaaaactgaggtacagcctt
cgtcagtacaatattgttggactgcacaccaacattgacttcttactcaacctgtctggc
cacccagagtttgaagctgggaacgtgcacactgatttcatccctcaacaccacaaacag
ttgttgctcagtcggaaggctgcagccaaagagtctttatgccaggcagccctgggtctc
atcctcaaggagaaagccatgaccgacactttcactcttcaggcacatgatcaattctct
ccattttcgtctagcagtggaagaagactgaatatctcgtataccagaaacatgactctt
aaagatggtaaaaacaatgtagccatagctgtaacgtataaccatgatgggtcttatagc
atgcagattgaagataaaactttccaagtccttggtaatctttacagcgagggagactgc
acttacctgaaatgttctgttaatggagttgctagtaaagcgaagctgattatcctggaa
aacactatttacctattttccaaggaaggaagtattgagattgacattccagtccccaaa
tacttatcttctgtgagctcacaagaaactcagggcggccccttagctcctatgactgga
accattgaaaaggtgtttgtcaaagctggagacaaagtgaaagcgggagattccctcatg
gttatgatcgccatgaagatggagcataccataaagtctccaaaggatggcacagtaaag
aaagtgttctacagagaaggtgctcaggccaacagacacactcctttagtcgagtttgag
gaggaagaatcagacaaaagggaatcggaataa