Result of FASTA (ccds) for pF1KB8528
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8528, 885 aa
  1>>>pF1KB8528 885 - 885 aa - 885 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2145+/-0.000992; mu= 12.3062+/- 0.060
 mean_var=116.4626+/-23.179, 0's: 0 Z-trim(108.0): 28  B-trim: 0 in 0/51
 Lambda= 0.118845
 statistics sampled from 9951 (9957) to 9951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.306), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(32554)
CCDS30584.1 EXOSC10 gene_id:5394|Hs108|chr1        ( 885) 5937 1029.6       0
CCDS126.1 EXOSC10 gene_id:5394|Hs108|chr1          ( 860) 4739 824.1       0


>>CCDS30584.1 EXOSC10 gene_id:5394|Hs108|chr1             (885 aa)
 initn: 5937 init1: 5937 opt: 5937  Z-score: 5503.9  bits: 1029.6 E(32554):    0
Smith-Waterman score: 5937; 100.0% identity (100.0% similar) in 885 aa overlap (1-885:1-885)

               10        20        30        40        50        60
pF1KB8 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLGHRAPVSQAAKFDPSTKIYEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLGHRAPVSQAAKFDPSTKIYEI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
              790       800       810       820       830       840

              850       860       870       880     
pF1KB8 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
              850       860       870       880     

>>CCDS126.1 EXOSC10 gene_id:5394|Hs108|chr1               (860 aa)
 initn: 5756 init1: 4686 opt: 4739  Z-score: 4394.0  bits: 824.1 E(32554):    0
Smith-Waterman score: 5710; 97.2% identity (97.2% similar) in 885 aa overlap (1-885:1-860)

               10        20        30        40        50        60
pF1KB8 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLGHRAPVSQAAKFDPSTKIYEI
       ::::::::::::::::::::::::::::::::::                         :
CCDS12 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRM-------------------------I
              670       680       690                              

              730       740       750       760       770       780
pF1KB8 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
         700       710       720       730       740       750     

              790       800       810       820       830       840
pF1KB8 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
         760       770       780       790       800       810     

              850       860       870       880     
pF1KB8 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
         820       830       840       850       860




885 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:35:36 2016 done: Sat Nov  5 16:35:36 2016
 Total Scan time:  4.370 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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