FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5709, 784 aa
  1>>>pF1KB5709 784 - 784 aa - 784 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3673+/-0.00101; mu= -1.8268+/- 0.060
 mean_var=280.6396+/-56.384, 0's: 0 Z-trim(114.0): 15  B-trim: 14 in 1/52
 Lambda= 0.076560
 statistics sampled from 14613 (14625) to 14613 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.449), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(32554)
CCDS2623.1 RBSN gene_id:64145|Hs108|chr3           ( 784) 5218 590.1 4.5e-168


>>CCDS2623.1 RBSN gene_id:64145|Hs108|chr3                (784 aa)
 initn: 5218 init1: 5218 opt: 5218  Z-score: 3130.9  bits: 590.1 E(32554): 4.5e-168
Smith-Waterman score: 5218; 100.0% identity (100.0% similar) in 784 aa overlap (1-784:1-784)

               10        20        30        40        50        60
pF1KB5 MASLDDPGEVREGFLCPLCLKDLQSFYQLHSHYEEEHSGEDRDVKGQIKSLVQKAKKAKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MASLDDPGEVREGFLCPLCLKDLQSFYQLHSHYEEEHSGEDRDVKGQIKSLVQKAKKAKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 RLLKREGDDRAESGTQGYESFSYGGVDPYMWEPQELGAVRSHLSDFKKHRAARIDHYVVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RLLKREGDDRAESGTQGYESFSYGGVDPYMWEPQELGAVRSHLSDFKKHRAARIDHYVVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 VNKLIIRLEKLTAFDRTNTESAKIRAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 VNKLIIRLEKLTAFDRTNTESAKIRAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 LCGSIMCKKCMELISLPLANKLTSASKESLSTHTSPSQSPNSVHGSRRGSISSMSSVSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LCGSIMCKKCMELISLPLANKLTSASKESLSTHTSPSQSPNSVHGSRRGSISSMSSVSSV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 LDEKDDDRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LDEKDDDRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 ASLNAGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPSNLRLQRMIRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 ASLNAGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPSNLRLQRMIRY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 SATLFVQEKLLGLMSLPTKEQFEELKKKRKEEMERKRAVERQAALESQRRLEERQSGLAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SATLFVQEKLLGLMSLPTKEQFEELKKKRKEEMERKRAVERQAALESQRRLEERQSGLAS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 RAANGEVASLRRGPAPLRKAEGWLPLSGGQGQSEDSDPLLQQIHNITSFIRQAKAAGRMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 RAANGEVASLRRGPAPLRKAEGWLPLSGGQGQSEDSDPLLQQIHNITSFIRQAKAAGRMD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB5 EVRTLQENLRQLQDEYDQQQTEKAIELSRRQAEEEDLQREQLQMLRERELEREREQFRVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EVRTLQENLRQLQDEYDQQQTEKAIELSRRQAEEEDLQREQLQMLRERELEREREQFRVA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB5 SLHTRTRSLDFREIGPFQLEPSREPRTHLAYALDLGSSPVPSSTAPKTPSLSSTQPTRVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SLHTRTRSLDFREIGPFQLEPSREPRTHLAYALDLGSSPVPSSTAPKTPSLSSTQPTRVW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB5 SGPPAVGQERLPQSSMPQQHEGPSLNPFDEEDLSSPMEEATTGPPAAGVSLDPSARILKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 SGPPAVGQERLPQSSMPQQHEGPSLNPFDEEDLSSPMEEATTGPPAAGVSLDPSARILKE
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB5 YNPFEEEDEEEEAVAGNPFIQPDSPAPNPFSEEDEHPQQRLSSPLVPGNPFEEPTCINPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 YNPFEEEDEEEEAVAGNPFIQPDSPAPNPFSEEDEHPQQRLSSPLVPGNPFEEPTCINPF
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB5 EMDSDSGPEAEEPIEEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EMDSDSGPEAEEPIEEELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK
              730       740       750       760       770       780

           
pF1KB5 GGTD
       ::::
CCDS26 GGTD
           




784 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:09:04 2016 done: Sat Nov  5 16:09:04 2016
 Total Scan time:  4.860 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]