Result of FASTA (ccds) for pF1KB8491
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8491, 903 aa
  1>>>pF1KB8491 903 - 903 aa - 903 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.5652+/-0.00108; mu= -10.8117+/- 0.065
 mean_var=442.2023+/-93.942, 0's: 0 Z-trim(115.7): 99  B-trim: 119 in 1/51
 Lambda= 0.060991
 statistics sampled from 16220 (16308) to 16220 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.501), width:  16
 Scan time:  5.810

The best scores are:                                      opt bits E(32554)
CCDS11126.1 CNTROB gene_id:116840|Hs108|chr17      ( 903) 5934 537.0 5.8e-152
CCDS82063.1 CNTROB gene_id:116840|Hs108|chr17      ( 904) 5922 536.0 1.2e-151
CCDS32557.1 CNTROB gene_id:116840|Hs108|chr17      ( 925) 5500 498.9 1.8e-140


>>CCDS11126.1 CNTROB gene_id:116840|Hs108|chr17           (903 aa)
 initn: 5934 init1: 5934 opt: 5934  Z-score: 2841.7  bits: 537.0 E(32554): 5.8e-152
Smith-Waterman score: 5934; 99.9% identity (99.9% similar) in 903 aa overlap (1-903:1-903)

               10        20        30        40        50        60
pF1KB8 MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TSPPHEGLDGFAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSPPHEGLDGFAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLIPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PLIPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PDFQGLRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDFQGLRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTRLEQSLSEAMEALNREQESAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTRLEQSLSEAMEALNREQESAR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELETLRAALEEERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELETLRAALEEERQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 HRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 QLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPQAPPAGPSSPGPQEPEKEERRVW
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS11 QLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQEPEKEERRVW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 TMPPMAVALKPVLQQSREARDELPGAPPVLCSSSSDLSLLLGPSFQSQHSFQPLEPKPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TMPPMAVALKPVLQQSREARDELPGAPPVLCSSSSDLSLLLGPSFQSQHSFQPLEPKPDL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 TSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQGLPPAQLEGLKNFLHQLLETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQGLPPAQLEGLKNFLHQLLETV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 PQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSH
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 SQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGTD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB8 GRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKTEKPPARKKSGHPAPSSMRSRGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKTEKPPARKKSGHPAPSSMRSRGG
              850       860       870       880       890       900

          
pF1KB8 VWR
       :::
CCDS11 VWR
          

>>CCDS82063.1 CNTROB gene_id:116840|Hs108|chr17           (904 aa)
 initn: 5920 init1: 5484 opt: 5922  Z-score: 2836.0  bits: 536.0 E(32554): 1.2e-151
Smith-Waterman score: 5922; 99.8% identity (99.8% similar) in 904 aa overlap (1-903:1-904)

               10        20        30        40        50        60
pF1KB8 MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TSPPHEGLDGFAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSPPHEGLDGFAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLIPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PLIPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PDFQGLRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PDFQGLRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTRLEQSLSEAMEALNREQESAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTRLEQSLSEAMEALNREQESAR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELETLRAALEEERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELETLRAALEEERQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 HRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 QLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPQAPPAGPSSPGPQEPEKEERRVW
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS82 QLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQEPEKEERRVW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 TMPPMAVALKPVLQQSREARDELPGAPPVLCSSSSDLSLLLGPSFQSQHSFQPLEPKPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TMPPMAVALKPVLQQSREARDELPGAPPVLCSSSSDLSLLLGPSFQSQHSFQPLEPKPDL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 TSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQGLPPAQLEGLKNFLHQLLETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQGLPPAQLEGLKNFLHQLLETV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 PQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSH
              730       740       750       760       770       780

              790       800       810       820       830          
pF1KB8 SQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSG-T
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS82 SQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGRT
              790       800       810       820       830       840

     840       850       860       870       880       890         
pF1KB8 DGRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKTEKPPARKKSGHPAPSSMRSRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DGRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKTEKPPARKKSGHPAPSSMRSRG
              850       860       870       880       890       900

     900   
pF1KB8 GVWR
       ::::
CCDS82 GVWR
           

>>CCDS32557.1 CNTROB gene_id:116840|Hs108|chr17           (925 aa)
 initn: 5484 init1: 5484 opt: 5500  Z-score: 2635.2  bits: 498.9 E(32554): 1.8e-140
Smith-Waterman score: 5880; 97.5% identity (97.5% similar) in 925 aa overlap (1-903:1-925)

               10        20        30        40        50        60
pF1KB8 MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MATSADSPSSPLGAEDLLSDSSEPPGLNQVSSEVTSQLYASLRLSRQAEATARAQLYLPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TSPPHEGLDGFAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSPPHEGLDGFAQELSRSLSVGLEKNLKKKDGSKHIFEMESVRGQLQTMLQTSRDTAYRD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PLIPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PLIPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PDFQGLRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PDFQGLRDALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVAADRKKDTMIEQLDKTLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTRLEQSLSEAMEALNREQESAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RVVEGWNRHEAERTEVLRGLQEEHQAAELTRSKQQETVTRLEQSLSEAMEALNREQESAR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 LQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELETLRAALEEERQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LQQRERETLEEERQALTLRLEAEQQRCCVLQEERDAARAGQLSEHRELETLRAALEEERQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TWAQQEHQLKEHYQALQEESQAQLEREKEKSQREAQAAWETQHQLALVQSEVRRLEGELD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TARRERDALQLEMSLVQARYESQRIQLESELAVQLEQRVTERLAQAQESSLRQAASLREH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 HRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HRKQLQDLSGQHQQELASQLAQFKVEMAEREERQQQVAEDYELRLAREQARVCELQSGNQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 QLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPQAPPAGPSSPGPQEPEKEERRVW
       ::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
CCDS32 QLEEQRVELVERLQAMLQAHWDEANQLLSTTLPPPNPPAPPAGPSSPGPQEPEKEERRVW
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 TMPPMAVALKPVLQQSREARDELPGAPPVLCSSSSDLSLLLGPSFQSQHSFQPLEPKPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TMPPMAVALKPVLQQSREARDELPGAPPVLCSSSSDLSLLLGPSFQSQHSFQPLEPKPDL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 TSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQGLPPAQLEGLKNFLHQLLETV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSSTAGAFSALGAFHPDHRAERPFPEEDPGPDGEGLLKQGLPPAQLEGLKNFLHQLLETV
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 PQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQNNENPSVDLLPPKSGPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSH
              730       740       750       760       770       780

              790       800       810       820       830          
pF1KB8 SQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSG--
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS32 SQGSGPSSGSPERGGDGLTFPRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGYK
              790       800       810       820       830       840

                          840       850       860       870        
pF1KB8 --------------------TDGRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKT
                           ::::::::::::::::::::::::::::::::::::::::
CCDS32 PGRKEEGFSGWKLDYGEWSGTDGRGDNVPRRNTDSRLGEIPRKEIPSQAVPRRLATAPKT
              850       860       870       880       890       900

      880       890       900   
pF1KB8 EKPPARKKSGHPAPSSMRSRGGVWR
       :::::::::::::::::::::::::
CCDS32 EKPPARKKSGHPAPSSMRSRGGVWR
              910       920     




903 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:40:50 2016 done: Sat Nov  5 15:40:51 2016
 Total Scan time:  5.810 Total Display time:  0.110

Function used was FASTA [36.3.4 Apr, 2011]
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