Result of FASTA (omim) for pF1KB5874
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5874, 494 aa
  1>>>pF1KB5874 494 - 494 aa - 494 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.5901+/-0.000667; mu= -13.3072+/- 0.042
 mean_var=554.0721+/-112.585, 0's: 0 Z-trim(118.6): 403  B-trim: 1939 in 2/56
 Lambda= 0.054487
 statistics sampled from 31189 (31632) to 31189 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.371), width:  16
 Scan time: 10.730

The best scores are:                                      opt bits E(85289)
NP_005617 (OMIM: 601940) serine/arginine-rich spli ( 494) 3163 263.7 8.6e-70
XP_011540253 (OMIM: 601940) PREDICTED: serine/argi ( 464) 1728 150.9 7.5e-36
NP_006266 (OMIM: 601944) serine/arginine-rich spli ( 344) 1385 123.8   8e-28
XP_005268056 (OMIM: 600914) PREDICTED: serine/argi ( 271) 1027 95.5   2e-19
XP_005268057 (OMIM: 600914) PREDICTED: serine/argi ( 271) 1027 95.5   2e-19
XP_016877082 (OMIM: 600914) PREDICTED: serine/argi ( 271) 1027 95.5   2e-19
NP_008856 (OMIM: 600914) serine/arginine-rich spli ( 272) 1020 95.0 2.9e-19
NP_001307143 (OMIM: 600914) serine/arginine-rich s ( 272) 1020 95.0 2.9e-19
NP_001034554 (OMIM: 600914) serine/arginine-rich s ( 272) 1020 95.0 2.9e-19
XP_011535379 (OMIM: 600914) PREDICTED: serine/argi ( 239)  646 65.5 1.9e-10
NP_008855 (OMIM: 600812) serine/arginine-rich spli ( 248)  599 61.8 2.5e-09
XP_016877083 (OMIM: 600914) PREDICTED: serine/argi ( 145)  493 53.3 5.6e-07
NP_001071634 (OMIM: 600812) serine/arginine-rich s ( 201)  464 51.1 3.4e-06
XP_016864545 (OMIM: 609268) PREDICTED: splicing re ( 359)  438 49.4 2.1e-05
NP_001310463 (OMIM: 609268) splicing regulatory gl ( 359)  438 49.4 2.1e-05
NP_001310464 (OMIM: 609268) splicing regulatory gl ( 358)  436 49.2 2.3e-05
XP_011541473 (OMIM: 609268) PREDICTED: splicing re ( 508)  438 49.5 2.7e-05
NP_001310456 (OMIM: 609268) splicing regulatory gl ( 508)  438 49.5 2.7e-05
NP_631907 (OMIM: 609268) splicing regulatory gluta ( 508)  438 49.5 2.7e-05
XP_005247024 (OMIM: 606093) PREDICTED: peptidyl-pr ( 754)  441 49.9   3e-05
NP_004783 (OMIM: 606093) peptidyl-prolyl cis-trans ( 754)  441 49.9   3e-05
XP_005247023 (OMIM: 606093) PREDICTED: peptidyl-pr ( 754)  441 49.9   3e-05
NP_001257421 (OMIM: 609268) splicing regulatory gl ( 507)  436 49.4   3e-05
NP_001070667 (OMIM: 609268) splicing regulatory gl ( 624)  438 49.6 3.1e-05
XP_005255283 (OMIM: 606032) PREDICTED: serine/argi (2751)  455 51.6 3.4e-05
NP_057417 (OMIM: 606032) serine/arginine repetitiv (2752)  455 51.6 3.4e-05
NP_001310458 (OMIM: 609268) splicing regulatory gl ( 623)  436 49.4 3.4e-05
NP_003760 (OMIM: 601943) serine/arginine-rich spli ( 221)  414 47.2 5.6e-05
XP_016872631 (OMIM: 603269) PREDICTED: serine/argi ( 282)  394 45.8  0.0002
NP_115285 (OMIM: 603269) serine/arginine-rich spli ( 282)  394 45.8  0.0002
NP_001310462 (OMIM: 609268) splicing regulatory gl ( 538)  396 46.2 0.00027
XP_016879869 (OMIM: 614396) PREDICTED: G patch dom (1288)  389 46.1 0.00073
NP_001291869 (OMIM: 614396) G patch domain-contain (1424)  389 46.1 0.00078
NP_001291871 (OMIM: 614396) G patch domain-contain (1424)  389 46.1 0.00078
XP_016879867 (OMIM: 614396) PREDICTED: G patch dom (1424)  389 46.1 0.00078
XP_016879866 (OMIM: 614396) PREDICTED: G patch dom (1424)  389 46.1 0.00078
XP_016879865 (OMIM: 614396) PREDICTED: G patch dom (1424)  389 46.1 0.00078
NP_001291872 (OMIM: 614396) G patch domain-contain (1424)  389 46.1 0.00078
XP_016879864 (OMIM: 614396) PREDICTED: G patch dom (1424)  389 46.1 0.00078
XP_016879868 (OMIM: 614396) PREDICTED: G patch dom (1424)  389 46.1 0.00078
NP_001291870 (OMIM: 614396) G patch domain-contain (1424)  389 46.1 0.00078
XP_016858323 (OMIM: 602010) PREDICTED: serine/argi ( 293)  369 43.8 0.00079
XP_016858319 (OMIM: 602010) PREDICTED: serine/argi ( 293)  369 43.8 0.00079
XP_016858320 (OMIM: 602010) PREDICTED: serine/argi ( 293)  369 43.8 0.00079
XP_016858321 (OMIM: 602010) PREDICTED: serine/argi ( 293)  369 43.8 0.00079
XP_016858322 (OMIM: 602010) PREDICTED: serine/argi ( 293)  369 43.8 0.00079
XP_011522860 (OMIM: 614396) PREDICTED: G patch dom (1453)  389 46.1 0.00079
XP_016879862 (OMIM: 614396) PREDICTED: G patch dom (1453)  389 46.1 0.00079
XP_016879861 (OMIM: 614396) PREDICTED: G patch dom (1453)  389 46.1 0.00079
XP_011522861 (OMIM: 614396) PREDICTED: G patch dom (1453)  389 46.1 0.00079


>>NP_005617 (OMIM: 601940) serine/arginine-rich splicing  (494 aa)
 initn: 3163 init1: 3163 opt: 3163  Z-score: 1374.0  bits: 263.7 E(85289): 8.6e-70
Smith-Waterman score: 3163; 99.8% identity (100.0% similar) in 494 aa overlap (1-494:1-494)

               10        20        30        40        50        60
pF1KB5 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 RSKKEKSRSPSKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 REESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 REESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB5 ESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS
              430       440       450       460       470       480

              490    
pF1KB5 RSPSRSRSRSHSRS
       ::::::::::::::
NP_005 RSPSRSRSRSHSRS
              490    

>>XP_011540253 (OMIM: 601940) PREDICTED: serine/arginine  (464 aa)
 initn: 2125 init1: 1719 opt: 1728  Z-score: 764.7  bits: 150.9 E(85289): 7.5e-36
Smith-Waterman score: 2909; 93.7% identity (93.9% similar) in 494 aa overlap (1-494:1-464)

               10        20        30        40        50        60
pF1KB5 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 RRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRS
       ::::::::::::::                              ::::::::::::::::
XP_011 RRRSYSRSRSHSRS------------------------------GSRSRSKSRSRSQSRS
              190                                     200       210

              250       260       270       280       290       300
pF1KB5 RSKKEKSRSPSKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS
              220       230       240       250       260       270

              310       320       330       340       350       360
pF1KB5 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS
              280       290       300       310       320       330

              370       380       390       400       410       420
pF1KB5 REESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 REESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKS
              340       350       360       370       380       390

              430       440       450       460       470       480
pF1KB5 ESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSAS
              400       410       420       430       440       450

              490    
pF1KB5 RSPSRSRSRSHSRS
       ::::::::::::::
XP_011 RSPSRSRSRSHSRS
              460    

>>NP_006266 (OMIM: 601944) serine/arginine-rich splicing  (344 aa)
 initn: 841 init1: 841 opt: 1385  Z-score: 620.5  bits: 123.8 E(85289): 8e-28
Smith-Waterman score: 1427; 66.5% identity (80.9% similar) in 361 aa overlap (1-352:1-344)

               10        20        30        40        50        60
pF1KB5 MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDL
       :::::::::::..::.:..:::.:::..::::::::::::::.: :::::::::::::.:
NP_006 MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL
               10        20        30        40        50        60

               70           80           90       100       110    
pF1KB5 CGERVIVEHARGPRRD--G-SYGSGRSGYGY---RRSGRDKYGPPTRTEYRLIVENLSSR
       ::::::::::::::::  : ::::  .: ::   : :::::::::.::::::::::::::
NP_006 CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB5 CSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVE
       ::::::::.:::::::::::::: : ::::::: :::::::::.::::::.:::.:::.:
NP_006 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB5 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS
       ::: . .::::: :::.:::: :::    :::: .:      .::::: : :::::.:::
NP_006 DKPRTSHRRSYSGSRSRSRSRRRSR----SRSRRSS------RSRSRSISKSRSRSRSRS
              190       200           210             220       230

          240       250       260       270       280       290    
pF1KB5 RSQSRSRSKKEKSRSPSKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRH
       ...:::::: .:::: ::.: .:   : ..:::.:::. :.      . .. .::::...
NP_006 KGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEK------SRSRSRSRSPKEN
              240       250       260       270             280    

             300       310       320       330       340       350 
pF1KB5 KS---KSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSK
        .   ::::::::: :          :..::     ... :::::.. :.:::::::.:.
NP_006 GKGDIKSKSRSRSQSRSNSPLPVPP-SKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSR
          290       300        310       320       330       340   

             360       370       380       390       400       410 
pF1KB5 DKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSV
       :                                                           
NP_006 D                                                           
                                                                   

>>XP_005268056 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 1188 init1: 480 opt: 1027  Z-score: 469.7  bits: 95.5 E(85289): 2e-19
Smith-Waterman score: 1027; 61.7% identity (81.6% similar) in 277 aa overlap (3-271:5-268)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
XP_005 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80          90        100       110     
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
       .::.::: .::::. :  :. : :: .  .. ::   :. . ::.::: :::::::::: 
XP_005 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
               70         80        90       100       110         

         120       130       140       150       160       170     
pF1KB5 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
       :::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.: 
XP_005 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB5 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
         ::.:.:: :::::..:: ::::    :::::  :..:.:.::::::: :::.:.: ::
XP_005 --GSKRHRSRSRSRSRTRSSSRSR----SRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSR
        180       190       200            210       220       230 

             240       250        260       270       280       290
pF1KB5 S----QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
       :    .:..:... .:.:: : :..::::    .:::.: :                   
XP_005 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                
             240       250       260           270                 

              300       310       320       330       340       350
pF1KB5 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS

>>XP_005268057 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 1188 init1: 480 opt: 1027  Z-score: 469.7  bits: 95.5 E(85289): 2e-19
Smith-Waterman score: 1027; 61.7% identity (81.6% similar) in 277 aa overlap (3-271:5-268)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
XP_005 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80          90        100       110     
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
       .::.::: .::::. :  :. : :: .  .. ::   :. . ::.::: :::::::::: 
XP_005 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
               70         80        90       100       110         

         120       130       140       150       160       170     
pF1KB5 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
       :::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.: 
XP_005 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB5 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
         ::.:.:: :::::..:: ::::    :::::  :..:.:.::::::: :::.:.: ::
XP_005 --GSKRHRSRSRSRSRTRSSSRSR----SRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSR
        180       190       200            210       220       230 

             240       250        260       270       280       290
pF1KB5 S----QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
       :    .:..:... .:.:: : :..::::    .:::.: :                   
XP_005 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                
             240       250       260           270                 

              300       310       320       330       340       350
pF1KB5 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS

>>XP_016877082 (OMIM: 600914) PREDICTED: serine/arginine  (271 aa)
 initn: 1188 init1: 480 opt: 1027  Z-score: 469.7  bits: 95.5 E(85289): 2e-19
Smith-Waterman score: 1027; 61.7% identity (81.6% similar) in 277 aa overlap (3-271:5-268)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
XP_016 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80          90        100       110     
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
       .::.::: .::::. :  :. : :: .  .. ::   :. . ::.::: :::::::::: 
XP_016 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
               70         80        90       100       110         

         120       130       140       150       160       170     
pF1KB5 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
       :::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.: 
XP_016 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB5 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
         ::.:.:: :::::..:: ::::    :::::  :..:.:.::::::: :::.:.: ::
XP_016 --GSKRHRSRSRSRSRTRSSSRSR----SRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSR
        180       190       200            210       220       230 

             240       250        260       270       280       290
pF1KB5 S----QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
       :    .:..:... .:.:: : :..::::    .:::.: :                   
XP_016 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                
             240       250       260           270                 

              300       310       320       330       340       350
pF1KB5 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS

>>NP_008856 (OMIM: 600914) serine/arginine-rich splicing  (272 aa)
 initn: 1381 init1: 525 opt: 1020  Z-score: 466.7  bits: 95.0 E(85289): 2.9e-19
Smith-Waterman score: 1020; 61.0% identity (81.2% similar) in 277 aa overlap (3-271:5-269)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
NP_008 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80          90        100       110     
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
       .::.::: .::::. :  :. : :: .  .. ::   :. . ::.::: :::::::::: 
NP_008 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
               70         80        90       100       110         

         120       130       140       150       160       170     
pF1KB5 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
       :::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.: 
NP_008 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB5 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
         ::.:   .:::::.::::.::    .:::::  :..:.:.::::::: :::.:.: ::
NP_008 --GSKR---HSRSRSRSRSRTRSSSRSRSRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSR
        180          190       200        210       220       230  

             240       250        260       270       280       290
pF1KB5 S----QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
       :    .:..:... .:.:: : :..::::    .:::.: :                   
NP_008 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                
            240       250       260           270                  

              300       310       320       330       340       350
pF1KB5 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS

>>NP_001307143 (OMIM: 600914) serine/arginine-rich splic  (272 aa)
 initn: 1381 init1: 525 opt: 1020  Z-score: 466.7  bits: 95.0 E(85289): 2.9e-19
Smith-Waterman score: 1020; 61.0% identity (81.2% similar) in 277 aa overlap (3-271:5-269)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
NP_001 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80          90        100       110     
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
       .::.::: .::::. :  :. : :: .  .. ::   :. . ::.::: :::::::::: 
NP_001 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
               70         80        90       100       110         

         120       130       140       150       160       170     
pF1KB5 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
       :::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.: 
NP_001 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB5 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
         ::.:   .:::::.::::.::    .:::::  :..:.:.::::::: :::.:.: ::
NP_001 --GSKR---HSRSRSRSRSRTRSSSRSRSRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSR
        180          190       200        210       220       230  

             240       250        260       270       280       290
pF1KB5 S----QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
       :    .:..:... .:.:: : :..::::    .:::.: :                   
NP_001 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                
            240       250       260           270                  

              300       310       320       330       340       350
pF1KB5 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS

>>NP_001034554 (OMIM: 600914) serine/arginine-rich splic  (272 aa)
 initn: 1381 init1: 525 opt: 1020  Z-score: 466.7  bits: 95.0 E(85289): 2.9e-19
Smith-Waterman score: 1020; 61.0% identity (81.2% similar) in 277 aa overlap (3-271:5-269)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
NP_001 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80          90        100       110     
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSG--YGYRRSGRDKYG-PPTRTEYRLIVENLSSRC
       .::.::: .::::. :  :. : :: .  .. ::   :. . ::.::: :::::::::: 
NP_001 ELCSERVTIEHARA-RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV
               70         80        90       100       110         

         120       130       140       150       160       170     
pF1KB5 SWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED
       :::::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.: 
NP_001 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-
     120       130       140       150       160       170         

         180       190       200       210       220       230     
pF1KB5 KPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSR
         ::.:   .:::::.::::.::    .:::::  :..:.:.::::::: :::.:.: ::
NP_001 --GSKR---HSRSRSRSRSRTRSSSRSRSRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSR
        180          190       200        210       220       230  

             240       250        260       270       280       290
pF1KB5 S----QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRS
       :    .:..:... .:.:: : :..::::    .:::.: :                   
NP_001 SPVPEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                
            240       250       260           270                  

              300       310       320       330       340       350
pF1KB5 PSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKS

>>XP_011535379 (OMIM: 600914) PREDICTED: serine/arginine  (239 aa)
 initn: 676 init1: 525 opt: 646  Z-score: 308.5  bits: 65.5 E(85289): 1.9e-10
Smith-Waterman score: 896; 56.9% identity (74.8% similar) in 274 aa overlap (3-271:5-236)

                 10        20        30        40        50        
pF1KB5   MPRVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGK
           ::.::::.  :::.::::::::::.: ..::: :.:::::.: ::::::::::.::
XP_011 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB5 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ
       .::.::                                .::.::: :::::::::: :::
XP_011 ELCSER-------------------------------NAPPVRTENRLIVENLSSRVSWQ
                                              70        80         

      120       130       140       150       160       170        
pF1KB5 DLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKPG
       ::::.::::::::.::::. . ::::.::.::.:.: :.:::.: :.:::::.:.:   :
XP_011 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE---G
      90       100       110       120       130       140         

      180       190       200       210       220       230        
pF1KB5 SRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRS--
       :.:   .:::::.::::.::    .:::::  :..:.:.::::::: :::.:.: :::  
XP_011 SKR---HSRSRSRSRSRTRSSSRSRSRSRS-RSRKSYSRSRSRSRSRSRSKSRSVSRSPV
           150       160       170        180       190       200  

          240       250        260       270       280       290   
pF1KB5 --QSRSRSKKEKSRSP-SKDKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSR
         .:..:... .:.:: : :..::::    .:::.: :                      
XP_011 PEKSQKRGSSSRSKSPASVDRQRSRS----RSRSRSVDSGN                   
            210       220           230                            

           300       310       320       330       340       350   
pF1KB5 HKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDK




494 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:25:46 2016 done: Sat Nov  5 15:25:48 2016
 Total Scan time: 10.730 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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