GENSCAN 1.0	Date run:  5-Nov-116	Time: 15:23:56

Sequence gi568815597r:165301266_165544893 : 243628 bp : 43.07% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   2418   2460   43  2  1   68  116     8 0.354   2.18
 1.02 Intr +   8383   8498  116  2  2   40   99    96 0.773   6.07
 1.03 Intr +  11812  11863   52  0  1   85  111    21 0.651   2.58
 1.04 Term +  12624  12718   95  1  2  117   51    31 0.589   0.29
 1.05 PlyA +  14248  14253    6                               1.05

 2.03 PlyA -  14855  14850    6                               1.05
 2.02 Term -  15365  15129  237  2  0   65   48   141 0.524   3.97
 2.01 Init -  16577  16503   75  2  0   40   89    50 0.764   1.39
 2.00 Prom -  21215  21176   40                              -1.66

 3.00 Prom +  22278  22317   40                              -3.16
 3.01 Init +  25833  25922   90  2  0   80  102    27 0.554   3.79
 3.02 Intr +  42976  43120  145  0  1   66   42   116 0.797   4.66
 3.03 Term +  43596  43888  293  1  2  127   33    96 0.911   3.51
 3.04 PlyA +  44604  44609    6                               1.05

 4.05 PlyA -  45499  45494    6                               1.05
 4.04 Term -  51997  51807  191  2  2   78   42   400 0.274  32.01
 4.03 Intr -  54316  54219   98  0  2  129   92   110 0.948  15.15
 4.02 Intr -  54959  54805  155  2  2   95   94    14 0.716   1.57
 4.01 Init -  55966  55661  306  1  0   59   77   157 0.210   9.00
 4.00 Prom -  58057  58018   40                              -7.36

 5.00 Prom +  60073  60112   40                              -7.86
 5.01 Init +  62783  62818   36  1  0   79  115    39 0.831   5.71
 5.02 Intr +  69266  69398  133  1  1   51   64   123 0.714   6.42
 5.03 Intr +  75570  75678  109  1  1  113   70    59 0.445   5.94
 5.04 Intr +  94753  94844   92  1  2   86   94    16 0.044   1.64
 5.05 Term +  97823  98037  215  0  2   64   46    68 0.087  -2.41
 5.06 PlyA +  98648  98653    6                               1.05

 6.14 PlyA -  99683  99678    6                               1.05
 6.13 Term - 100145  99998  148  1  1  123   52   232 0.918  20.47
 6.12 Intr - 105652 105547  106  2  1   57   94   171 0.995  13.87
 6.11 Intr - 107053 106962   92  0  2   89   91    79 0.997   7.94
 6.10 Intr - 108425 108293  133  0  1  120   39   104 0.996   8.40
 6.09 Intr - 109566 109437  130  0  1  109  103   106 0.999  14.47
 6.08 Intr - 109844 109684  161  0  2   71   88   143 0.838  12.31
 6.07 Intr - 115955 115776  180  0  0   45  100   257 0.985  22.44
 6.06 Intr - 118749 118605  145  0  1  106   88   139 0.988  15.56
 6.05 Intr - 127701 127454  248  1  2  125  111   115 0.425  14.68
 6.04 Intr - 131994 131846  149  2  2   30   86    66 0.090   0.48
 6.03 Intr - 135009 134846  164  0  2  119   37    32 0.074  -0.03
 6.02 Intr - 138221 138130   92  0  2   65   39   104 0.387   2.91
 6.01 Init - 143628 143580   49  0  1   70  107    43 0.152   5.51
 6.00 Prom - 149065 149026   40                              -6.46

 7.08 PlyA - 150821 150816    6                               1.05
 7.07 Term - 151414 151334   81  1  0  108   33    77 0.540   1.89
 7.06 Intr - 181098 181084   15  0  0  118   89    16 0.216   0.44
 7.05 Intr - 183560 183469   92  0  2  133   36    50 0.324   4.01
 7.04 Intr - 190641 190473  169  0  1   54   59    84 0.011   1.62
 7.03 Intr - 206906 206815   92  0  2   81  100    47 0.693   4.91
 7.02 Intr - 221822 221709  114  0  0   60  111    59 0.508   5.82
 7.01 Init - 235950 235935   16  0  1   62   97     1 0.092  -1.39
 7.00 Prom - 237847 237808   40                              -4.26

 8.00 Prom + 241134 241173   40                              -3.16
 8.01 Init + 243083 243489  407  1  2   41   67   320 0.349  21.26

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 159284 159345   62  1  2   86   91    53 0.833   6.12
S.002 Init + 170560 170662  103  0  1   80   80    83 0.802   7.10
S.003 Init - 186242 186237    6  2  0  118   88     0 0.947   3.87


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_1|101_aa
MGSRRVLDRNVKGQASPKSNAKTTGTRRCWMLKKTSEPPTFPMNFVSGTEGLLRFSHAQL
MPIGNNIESTGNNNNKNSITGGTPWLTFPKLLSEIRAELGS

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_1|306_bp
atgggaagtaggcgggtactggacaggaatgtaaagggccaagcctctccaaaaagcaat
gcaaaaaccactgggaccagacgttgctggatgctcaagaagaccagtgaaccacccacc
ttccccatgaactttgtgtctggaactgaaggcttgttgaggtttagtcatgctcaactt
atgccaattggaaacaatatagagtctacaggtaacaacaacaacaaaaacagcatcaca
ggaggaaccccttggctgacatttcccaaactgctttcagaaatcagggctgagctcggt
agctga

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_2|103_aa
MNYAEDKWWVINVALTLNPEDDVRSPPPRQSTCAYVSVPAGKPQFFLPSASLQYSLLVKQ
LEGVISLTAKGAHHEVASVGTKEQVVSVPPGPPVLKVTVVLVP

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_2|312_bp
atgaattacgcagaggataaatggtgggtcattaatgtagcgttgaccctgaacccagag
gatgacgtgagatcgccacctccccgacaaagcacttgtgcgtatgtctcagtaccagcc
gggaagccccagtttttcctgcccagcgcctccctgcagtattctctgcttgtgaagcag
cttgagggagtcataagtcttactgccaagggtgcccatcatgaggttgctagtgtaggg
accaaggagcaggtggtatcagtgcccccaggacctccagtcctcaaagtgaccgtggtg
ctggttccatag

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_3|175_aa
MDLVGLRSRSHPLETPAETGRVDKFIGWKKSLPHGTANWFSSLKSYACIPVKTVAVITRE
HMHSRNSCHNVRRSKRRKRPHAQERHQPLPTLELGAPGQAGISSDSGSGCRVLKQRHIRT
LLQRQGAYFWAQGELALICCTMNDNNAKNENMVWGDSPQEPNILVFKGTLMSLRG

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_3|528_bp
atggatttggtaggtttgagatccagaagtcaccctctggagacgccagctgaaactggg
agagtggacaagttcattggctggaagaagagtctacctcatggcactgccaactggttt
tcatctctgaagagctatgcctgcatccctgtgaagacggtggctgtcattaccagagaa
cacatgcacagtaggaattcctgccacaatgtgaggaggagcaagaggagaaagaggccc
catgctcaggagagacatcaacctctccccaccctggagctgggggccccaggccaagct
ggcatcagctccgactcaggctcaggctgtcgggtgctcaaacaaagacatattcggacc
ctcctgcagagacagggggcctatttctgggcccagggggagctggccttaatctgctgc
acaatgaatgacaacaatgctaagaatgaaaatatggtttggggggatagtccccaggag
cccaacattttggtatttaaaggaactttaatgagcttaagaggctaa

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_4|249_aa
MASVRPMSEYGSTLKEVGNWHEPSGDEGFEELGAAGPTSTGAKQLLSASRGPGKDCSAFI
AAVGERRGNPRGGTAVQEAPTSPQRPSRGEGHWGATGPERPETFPALADWREDLPARPAH
RLLRAPQQSAAPGVQKRAGRPPGPLQCPFSTWGRSSRPGPNMLDGLKMEENFQSAIDTSA
SFSSLLGRAVSPKSVCEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDKK
LYCKYDYEK

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_4|750_bp
atggcctctgtacgccccatgagtgaatatggttcgaccttaaaggaagttggaaactgg
catgagccctcgggtgatgaggggtttgaggagctaggagctgctgggcccacatctact
ggcgctaaacagcttctcagcgcttcccggggcccgggtaaggattgcagcgcttttata
gcagcagttggagagcggcgggggaatcctcgtggcggcaccgctgtccaggaggcgccg
acatctccgcaaaggcccagtcggggtgaggggcactggggggcgaccgggccagagcgc
cccgagacattcccggcactggccgactggcgggaggacctccccgcgcgccccgcacac
cggctcctgcgcgcaccccaacagagcgcagcgccaggagtccagaagcgggcgggacgc
cctccgggtcccttacagtgccccttctcgacctggggcaggtcctcccggcccggcccg
aacatgctggacggcctaaagatggaggagaacttccaaagcgcgatcgacacctcggcc
tccttctcctcgctgctgggcagagcggtgagccccaagtctgtctgcgagggctgtcag
cgggtcatcttggacaggtttctgctgcggctcaacgacagcttctggcatgagcagtgc
gtgcagtgcgcctcctgcaaagagcccctggagaccacctgcttctaccgggacaagaag
ctgtactgcaagtatgactacgagaagtaa

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_5|194_aa
MASAKASGEKVKQFKNGLIQSPLKKFRGDANSSQAPLSTRAVKCTVPVCEEPRSKPAPSP
LRLPDPAIHSTAARIAFPFHGFDHVTSPLGRPEELGPGERMRRERSALKYVVLLMPSMWQ
VSTGYKEDQLRKEVAFEALNLMGPAHAMKTAQLLPSFCSGLVRLPSSSSGDIAPDGCAAP
CWALTTLCFAAGKS

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_5|585_bp
atggcttcagcaaaggcatccggggagaaagtcaagcaattcaagaacggattaattcag
tcccctctcaagaaatttcgaggggatgcaaatagttctcaagcacccctctccactcga
gctgtcaagtgcacagtgccagtgtgtgaggagcccagatcaaagccagcaccctcccct
ctgcggctccccgacccagccatccacagcacagctgccagaatcgcctttccgttccac
ggttttgatcatgtaacatccccacttggaagaccagaggaattgggccctggagaaagg
atgagaagagagagaagtgctcttaagtacgtggtgctgttgatgccttccatgtggcaa
gtatcaacagggtataaggaggaccagctcaggaaggaggtggcctttgaggctctgaat
ctcatgggaccagcccatgcaatgaagacagcccagctcctgccaagcttctgttcaggc
ttagtgaggctccctagcagcagttcgggagacatcgcacctgatggatgtgcagcaccc
tgctgggccctgaccactctgtgttttgctgcaggcaagagctag

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_6|598_aa
MYGNYSHFMKFPAGYGVRTSWLAFRSRTGQFHLDSCSPQRRADELLRVAPRGLRETQFED
HKQPQVMGKPYLLSPVSLLVTEGLNSMICRPFCVALTVNPALSGDLEVQDQGTSGFVSGE
VHSLLPKMVPHMMEGMEKWTNCASSDAEGMKGSPGHTGSTSMSPSAALSTGKPMDSHPSY
TDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVNS
VSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKR
TIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAE
CATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAK
RIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGS
IFDRVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYT
KQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_6|1797_bp
atgtatggaaattattctcacttcatgaagtttcccgcaggctatggagttcggaccagc
tggctagcctttcgaagccgcacagggcagttccacctggattcatgtagcccccagaga
agggctgatgagctgctcagggtggctccaaggggactcagggaaactcagtttgaagac
cacaaacagccacaggtcatgggcaagccatacctcctttccccagtgtccttgcttgta
accgaggggttgaactcgatgatctgcaggcccttctgtgtagctttgacagtcaatcca
gctctttctggagacttggaagttcaggatcaaggcacgagcgggttcgtgtctggtgag
gtccactctctgcttccaaagatggtgcctcacatgatggaagggatggaaaaatggaca
aattgtgcatcctctgatgcagaagggatgaaaggctcccctggccacactggctctaca
tccatgagcccatcagcagccttgtccacagggaagccaatggacagccaccccagctac
acagataccccagtgagtgccccacggactctgagtgcagtggggacccccctcaatgcc
ctgggctctccatatcgagtcatcacctctgccatgggcccaccctcaggagcacttgca
gcgcctccaggaatcaacttggttgccccacccagctctcagctaaatgtggtcaacagt
gtcagcagttcagaggacatcaagcccttaccagggcttcccgggattggaaacatgaac
tacccatccaccagccccggatctctggttaaacacatctgtgccatctgtggagacaga
tcctcaggaaagcactacggggtatacagttgtgaaggctgcaaagggttcttcaagagg
acgataaggaaggacctcatctacacgtgtcgggataataaagactgcctcattgacaag
cgtcagcgcaaccgctgccagtactgtcgctatcagaagtgccttgtcatgggcatgaag
agggaagctgtgcaagaagaaagacagaggagccgagagcgagctgagagtgaggcagaa
tgtgctaccagtggtcatgaagacatgcctgtggagaggattctagaagctgaacttgct
gttgaaccaaagacagaatcctatggtgacatgaatatggagaactcgacaaatgaccct
gttaccaacatatgtcatgctgctgacaagcagcttttcaccctcgttgaatgggccaag
cgtattccccacttctctgacctcaccttggaggaccaggtcattttgcttcgggcaggg
tggaatgaattgctgattgcctctttctcccaccgctcagtttccgtgcaggatggcatc
cttctggccacgggtttacatgtccaccggagcagtgcccacagtgctggggtcggctcc
atctttgacagagtcctaactgagctggtttccaaaatgaaagacatgcagatggacaag
tcggaactgggatgcctgcgagccattgtactctttaacccagatgccaagggcctgtcc
aacccctctgaggtggagactctgcgagagaaggtttatgccacccttgaggcctacacc
aagcagaagtatccggaacagccaggcaggtttgccaagctgctgctgcgcctcccagct
ctgcgttccattggcttgaaatgcctggagcacctcttcttcttcaagctcatcggggac
acccccattgacaccttcctcatggagatgttggagaccccgctgcagatcacctga

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_7|192_aa
MAPDFELRHVATSNSKGVWKTQFSCVKDIYKHLARSKGMDHSTAAWNLNVVSGASVVIQD
CKCESHALRVVEQKAISMLAFANASALYHMPCFGVQFEMPKALTENLSQSTKYGSENPSH
NGFSYSFIILGRMYVFYRNQNQRTVVKLLSSQSVTGTSIGGHSSYVGLEQIFLSSNADIY
FFGWGSLDLDPV

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_7|579_bp
atggctcctgattttgaactcaggcacgtggccacatctaacagcaagggagtctggaaa
acacagttcagctgtgtgaaggatatttataaacatttagcaagatccaaaggaatggac
catagcacagctgcctggaatttgaatgtggtatctggagcttcagtagtcatccaggac
tgtaagtgtgaaagccatgcactgagagtggtggaacagaaggcaatatctatgttagcc
tttgccaatgccagtgctttgtaccacatgccctgctttggtgtacaatttgaaatgccg
aaagcactcactgaaaacttaagccaatccacaaaatatggctctgagaatccttcccat
aatggattcagttatagtttcatcattctaggaaggatgtatgtcttttatagaaatcag
aaccagcgcacagtggtgaagttgctgtcttcccaaagtgtcacaggcaccagcattgga
ggacactcctcctacgtgggacttgaacagattttcctgagctctaatgctgacatctac
ttctttggctggggttccttggatctggacccagtctag

>gi568815597r:165301266_165544893|GENSCAN_predicted_peptide_8|136_aa
MGLVSGSKCPNNCLCQAQEVICTGKQLTEYPLDIPLNTRRLFLNENRITSLPAMHLGLLS
DLVYLDCQNNRIREVMDYTFIGVFKLIYLDLSSNNLTSISPFTFSVLSNLVQLNIANNPH
LLSLHKFTFANTTSLS

>gi568815597r:165301266_165544893|GENSCAN_predicted_CDS_8|408_bp
atggggctggtatcagggtcaaagtgtccaaataattgtctgtgtcaagcccaagaagta
atctgcacagggaagcagttaaccgaatacccccttgacatacccctgaacacccggagg
ctgttcctgaacgagaacagaatcactagtttgccagcaatgcatctaggactcctcagt
gaccttgtttatttggactgtcagaacaaccggattcgagaggtgatggattataccttc
atcggggtcttcaaactcatctaccttgacctcagctccaacaacctaacctcgatctcc
ccattcactttctcggtgctcagcaacctggtgcagctgaacattgccaacaaccctcac
ctgttatcgcttcacaagttcacctttgccaacaccacctctttgagn