GENSCAN 1.0	Date run:  5-Nov-116	Time: 15:08:49

Sequence gi568815591r:140354520_140579344 : 224825 bp : 47.27% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.04 Intr -   4266   4121  146  0  2   97   67   180 0.729  15.88
 1.03 Intr -  15163  15071   93  1  0   93  103    38 0.971   5.96
 1.02 Intr -  25871  25763  109  1  1   94   99    54 0.986   7.39
 1.01 Init -  28007  27919   89  2  2   87  115   -45 0.644  -1.67
 1.00 Prom -  28651  28612   40                              -5.06

 2.00 Prom +  40886  40925   40                              -2.96
 2.01 Init +  42283  42308   26  0  2   63   80    13 0.282  -3.79
 2.02 Intr +  43786  43996  211  1  1   45   54   137 0.103   4.92
 2.03 Intr +  49549  49698  150  0  0   67  115    50 0.105   5.96
 2.04 Intr +  53116  53328  213  0  0   48   77   159 0.246   9.71
 2.05 Intr +  57355  57538  184  0  1  115   52   306 0.697  29.06
 2.06 Term +  71363  71631  269  0  2   86   44   373 0.553  28.36
 2.07 PlyA +  76180  76185    6                               1.05

 3.02 PlyA -  76640  76635    6                              -0.45
 3.01 Sngl -  81136  80795  342  1  0   62   54   211 0.817  11.30
 3.00 Prom -  85395  85356   40                              -4.66

 4.11 PlyA -  86299  86294    6                               1.05
 4.10 Term -  92314  92202  113  2  2   51   49   167 0.411   7.82
 4.09 Intr - 100210 100084  127  1  1   97   75   183 0.203  18.15
 4.08 Intr - 100714 100576  139  0  1   68   60    70 0.989   2.67
 4.07 Intr - 101381 101271  111  1  0   54   64   104 0.894   4.09
 4.06 Intr - 102347 102133  215  2  2   82   50   315 0.996  24.61
 4.05 Intr - 104714 104488  227  0  2   64  106   218 0.805  18.90
 4.04 Intr - 105417 105188  230  2  2   80   86   103 0.930   6.81
 4.03 Intr - 117492 117364  129  2  0  106  110    61 0.994   9.91
 4.02 Intr - 124467 124408   60  2  0   70   62    78 0.614   1.25
 4.01 Init - 124825 124641  185  1  2   79   91   162 0.964  12.29
 4.00 Prom - 126428 126389   40                              -7.66

 5.00 Prom + 134078 134117   40                              -1.66
 5.01 Init + 141219 141338  120  2  0   83   81   105 0.963   8.88
 5.02 Term + 152566 152637   72  0  0  116   49    41 0.625   0.91
 5.03 PlyA + 156539 156544    6                               1.05

 6.17 PlyA - 157365 157360    6                               1.05
 6.16 Term - 162994 162894  101  2  2   45   50    67 0.222  -3.11
 6.15 Intr - 165199 165113   87  2  0   90   82    98 0.998   9.34
 6.14 Intr - 167581 167336  246  2  0  103  100   427 0.992  42.83
 6.13 Intr - 168905 168788  118  2  1  107  127   158 0.998  21.64
 6.12 Intr - 171273 171232   42  0  0  110  109    67 0.997   9.44
 6.11 Intr - 172976 172799  178  1  1   93   83   316 0.566  31.52
 6.10 Intr - 179328 179280   49  1  1   98   92   -16 0.061  -2.46
 6.09 Intr - 185772 185579  194  2  2   39   71   145 0.287   7.04
 6.08 Intr - 190247 190099  149  2  2  122   80   127 0.416  14.33
 6.07 Intr - 192420 192280  141  0  0   93  105    79 0.973  10.65
 6.06 Intr - 203693 203624   70  1  1   70  105    25 0.565   1.58
 6.05 Intr - 205298 205189  110  2  2   96   96    64 0.562   7.08
 6.04 Intr - 212754 212567  188  1  2  102   87   303 0.997  31.01
 6.03 Intr - 214294 214244   51  2  0  106  100    65 0.969   8.38
 6.02 Intr - 215219 215126   94  2  1   80   70   113 0.999   8.24
 6.01 Intr - 219489 219289  201  0  0  118   90    78 0.967  10.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591r:140354520_140579344|GENSCAN_predicted_peptide_1|146_aa
MAWPNVFQRGSLLSQFSHHHVVVFLLTFFSYSLLHASRKTFSNVKVSISEQWTPSAFNTS
VELPVEIWSSNHLFPSAEKATLFLGTLDTIFLFSYAVVFVFGALTEWLRFYNKWLYCCLW
IVNGLLQSTGWPCVVAVMGNWFGKAG

>gi568815591r:140354520_140579344|GENSCAN_predicted_CDS_1|438_bp
atggcctggccaaatgtttttcaaagagggtctctgctgtcccagttcagccatcatcat
gttgtagtgttcctgctcactttcttcagttattcgttgctccatgcttcacgaaaaaca
tttagcaatgtcaaagtcagtatctctgagcagtggaccccaagtgcttttaacacgtca
gttgagctgcctgtggagatctggagcagcaaccatttgttccccagtgcagagaaagcg
actcttttcctcggcacactggataccattttcctcttctcctatgctgtggtgtttgtc
tttggtgcgctcacagaatggctgcgtttctacaacaaatggctgtactgctgcctgtgg
attgtgaacggcctgctgcagtccactggttggccctgtgtggttgctgttatgggcaac
tggtttgggaaagccggn

>gi568815591r:140354520_140579344|GENSCAN_predicted_peptide_2|350_aa
MVSFKRQARGAATYISPPPSRPGKPLGLDPPPPQQVFGPTHHRLRTRDPQWSPLSSPGSA
RRVSLAPLPASPAASSPLADAKPDTWGQNYTSHQAARQEEEGGTGGLKSKPRRKRKHYLL
TSRGERARQVARTMHFSSSARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQ
NTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFES
IPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKN
IEEVFVLMAKELIARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC

>gi568815591r:140354520_140579344|GENSCAN_predicted_CDS_2|1053_bp
atggtgtcattcaagagacaagccaggggggccgccacctacatctccccaccgccctcc
cgacccgggaagcccctcggattggacccgcccccgccccagcaggtcttcggccccacg
catcaccgcttgcgcacccgagatccgcagtggtcgccgctctccagccccggctccgct
cgccgggtcagcttggctccgctgcccgcctcccccgccgccagctcacccctggcggac
gccaaacccgacacctggggccagaactacacttcccaccaagcagcgaggcaggaggaa
gaagggggcactggggggctgaaaagcaaacccagaagaaagcgaaaacattacctgctg
accagcagaggtgagagagcgagacaggtggcaagaaccatgcacttctccagctcagcc
agggcagcagatgagaactttgactatttgttcaagattatcctcattggggattccaat
gtggggaagacgtgtgtggtgcagcatttcaagtctggagtctacactgagacacagcag
aacacgattggagtggactttaccgtgcgttcccttgatattgacggcaaaaaagtgaag
atgcaggtgtgggacacagctggccaggagcgcttccgcaccatcacccaaagctactac
cgcagtgcccacgcagccatcatcgcctatgacctcacccggcggtccacgttcgagtcc
atccctcactggattcatgagatagagaaatatggagctgcaaatgtggtcattatgctg
attggaaataaatgtgacctctgggaaaagcggcacgtcctgttcgaggatgcctgcaca
ctggctgagaagtacggcctcctggccgttttggagacatctgccaaggagtcaaagaac
atagaagaagtcttcgtgctcatggccaaggagctgatcgcgcgcaacagcctgcaccta
tatggggagagtgccctgaacggcctccccctggactccagccccgttcttatggcccag
ggtccaagtgaaaagacccactgcacttgctaa

>gi568815591r:140354520_140579344|GENSCAN_predicted_peptide_3|113_aa
MGHSGGSWGTGSSALRGGFTLVGKDAGAQRVLAGHREGPRGPAGEALLPKACEGSSVVPR
PGTIQGDFSAHISRNFFQASNSVEGARRWIPLWLPSRDLVSWARRQHSRSHPA

>gi568815591r:140354520_140579344|GENSCAN_predicted_CDS_3|342_bp
atggggcacagcggcggctcgtgggggacgggatccagcgctttgagaggtggcttcacg
ctggtggggaaggacgcaggcgcacagcgcgtccttgccgggcaccgcgagggcccgcga
gggcccgcgggggaagccctgctacccaaggcctgcgaagggtccagtgtggtcccgcgc
cccgggaccatacagggagatttcagcgcccacatcagcaggaacttcttccaggcaagc
aactccgtggaaggggctcggagatggatcccgctgtggctcccgagcagggacctggtg
agctgggcacggcgccagcacagccgcagccacccagcctga

>gi568815591r:140354520_140579344|GENSCAN_predicted_peptide_4|511_aa
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
CSHCVNPRWAAEPSALSAEAWRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIY
GDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG
AGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVG
ECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMV
CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF
VIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP
QRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAAFISTS
FLSMDGQCFIAGVLNPRTVYKYQYEYQSVAC

>gi568815591r:140354520_140579344|GENSCAN_predicted_CDS_4|1536_bp
atggcggaggctgcaactcccggaacaacagccacaacatcaggagcaggagcggcagcg
gcgacggcggcagcagcctcccccaccccgatccccacagtcaccgccccgtccctgggg
gcgggcggagggggcggcggcagcgacggcagcggcggcggctggactaaacaggtcacc
tgcagtcactgcgtcaacccccgctgggccgcggagccctcagcgctgtccgcggaggcc
tggcggtattttatgcatggggtttgtaaggaaggagacaactgtcgctactcgcatgac
ctctctgacagtccgtatagtgtagtgtgcaagtattttcagcgagggtactgtatttat
ggagaccgctgcagatatgaacatagcaaaccattgaaacaggaagaagcaactgctaca
gagctaactacaaagtcatcccttgctgcttcctcaagtctctcatcgatagttggacca
cttgttgaaatgaatacaggcgaagctgagtcaagaaattcaaactttgcaactgtagga
gcaggttcagaggactgggtgaatgctattgagtttgttcctgggcaaccctactgtggc
cgtactgcgccttcctgcactgaagcacccctgcagggctcagtgaccaaggaagaatca
gagaaagagcaaaccgccgtggagacaaagaagcagctgtgcccctatgctgcagtggga
gagtgccgatacggggagaactgtgtgtatctccacggagattcttgtgacatgtgtggg
ctgcaggtcctgcatccaatggatgctgcccagagatcgcagcatatcaaatcgtgcatt
gaggcccatgagaaggacatggagctctcatttgccgtgcagcgcagcaaggacatggtg
tgtgggatctgcatggaggtggtctatgagaaagccaaccccagtgagcgccgcttcggg
atcctctccaactgcaaccacacctactgtctcaagtgcattcgcaagtggaggagtgct
aagcaatttgagagcaagatcataaagtcctgcccagaatgccggatcacatctaacttt
gtcattccaagtgagtactgggtggaggagaaagaagagaagcagaaactcattctgaaa
tacaaggaggcaatgagcaacaaggcgtgcaggtattttgatgaaggacgtgggagctgc
ccatttggagggaactgtttttacaagcatgcgtaccctgatggccgtagagaggagcca
cagagacagaaagtgggaacatcaagcagataccgggcccaacgaaggaaccacttctgg
gaactcattgaggaaagagagaacagcaacccctttgacaacgatgaagaagaggttgtc
acctttgagctgggcgagatgttgcttatgcttttggctgcagcatttatcagtacttca
tttctttcaatggatggacagtgttttattgcaggggtcctcaaccctcggaccgtgtac
aagtaccagtacgagtaccaatccgtggcctgttag

>gi568815591r:140354520_140579344|GENSCAN_predicted_peptide_5|63_aa
MREERTGQREQQVWPGGWALLGVIQDLLTPLWLDPGSQAKAPPCFAQGSTSPLSPESDNV
NIS

>gi568815591r:140354520_140579344|GENSCAN_predicted_CDS_5|192_bp
atgagggaagagcgcacaggccagagggaacagcaggtatggcccggaggctgggccctg
cttggtgtgatccaggacctgctgacgccactgtggctggacccagggagccaggccaag
gcacccccttgttttgcacagggctccacctcccccctgtctcctgaatctgacaatgtc
aacatcagctga

>gi568815591r:140354520_140579344|GENSCAN_predicted_peptide_6|672_aa
QSLSKPAFFRQNSERRNFKLLDTRKLSRDGTGSPSKISPPSTPSSPDDIFFNLGDPQNGR
KKRKIPKLVLRINAIYEVRRGKKRVKRLSQSMESNSGKVTDENSESDSDTEEKLKAHSQR
LVNVKSRLKQAPRYPSLARELIEYQERQLFEYFVVVSLHKKQAGAAYVPELTQQFPLKLE
RSFKFMREAEDQLKAIPQFCFPDAKDWVPVQQFTSETFSFVLTGEDGSRRFGYCRRLLIL
DEVEKRRGISPALVQPLMRSVMEAPFPALGKTILVKNFLPGSGTEVIELCRPLDSRLEHV
DFESLFSSLSVRHLVCVFASLLLERRVIFIADKLRGFLLQQLPNVRRCEDGISVGEEKAA
GTWIIVVPSLEREPGHGTVMVCECEKDRHWVFRPFTAFRAPCAPWAPANEVFMITSILSK
CCHAMVALIYPFAWQHTYIPVLPPAMVDIVCSPTPFLIGLLSSSLPLLRELPLEEVLVVD
LVNSRFLRQMDDEDSILPRKLQVALEHILEQRNELACEQDEGPLDGRHGPESSPLNEVVS
EAFVRFFVEIVGHYSLFLTSGEREERTLQREAFRKAVSSKSLRHFLEVFMETQMFRGFIQ
ERELRRQDAKGLFEVRAQEYLETLPSGEHSGVNKFLKGLALTSDPHRNTKGRGADLNNGP
EGPYCLAGVLNL

>gi568815591r:140354520_140579344|GENSCAN_predicted_CDS_6|2019_bp
cagtcattgtccaaacctgcttttttccgacaaaattcagagaggaggaacttcaagctg
ctggacactaggaagctgagtcgggatggaactgggtccccttccaaaatcagccctccc
tccactcccagcagccctgatgacattttctttaaccttggagacccacagaacggcagg
aagaagagaaagatacccaagctggtgttgcgaatcaacgccatttatgaggtccggaga
ggaaagaaacgggtgaagaggctgtcccagtcaatggagagcaactcaggaaaagtgaca
gatgagaacagtgagtctgacagtgacacagaggagaagctgaaagctcacagccagcgc
ctggtcaacgtgaagtcccggctgaagcaggcgcctcggtacccatcacttgcccgggaa
ctcatcgagtaccaggagaggcagctcttcgagtactttgtggttgtgtctttgcacaag
aagcaggccggggctgcctacgtgccagaactcacccaacagttccctctgaagttggaa
aggtctttcaagttcatgagagaagctgaggaccaactgaaggccattccccagttctgt
tttcccgatgccaaggattgggttcctgtccagcagttcaccagtgaaacattctcattt
gtcttaactggagaagatgggagcagaaggttcggttactgccgaagactgctgatcttg
gatgaggtggaaaaaagacgaggcatctctcctgccctggttcagccactcatgagaagt
gtcatggaagcccctttcccagccctgggcaaaaccatccttgtcaagaacttcctgcca
ggttcaggaactgaggtgatcgaactgtgccgcccgctggactcccggctcgagcacgtg
gactttgagtctctcttctcctccctcagcgtccgccacctggtctgtgtgtttgcctcc
ctgcttctggagaggagggtcatcttcattgcagacaagctcaggggttttcttctgcag
cagctgccaaatgtcaggcgctgtgaggatgggatttctgtgggagaagagaaggcagca
ggaacgtggataattgtggtgccctccttggagcgagagccaggccatggtacagtaatg
gtgtgcgagtgtgagaaagaccgtcattgggtttttagaccctttacagctttcagagca
ccctgtgctccatgggctccagctaacgaggtattcatgataaccagcatcctgtccaag
tgctgccacgcgatggtggcgctgatctaccccttcgcctggcagcacacctacatcccg
gtgctgccacccgccatggtcgacatcgtgtgctcgccgacgcccttcctcatcgggctg
ctctccagctcgctgccactgctcagggagctgccgctggaagaggtccttgtggttgac
ctcgtcaacagccggttcctcagacagatggacgatgaggactccatcctgccccggaag
cttcaggtggccctggaacacattctggaacagaggaacgagctggcttgtgagcaggac
gaagggcccctagacggcaggcacggtccagagtccagccccttgaacgaggtggtgtct
gaagcctttgtccgcttcttcgtggagattgtgggacactactctttgttcctgacgtcg
ggcgagcgtgaggagagaaccctgcagcgggaggccttccgcaaagctgtctcctccaag
agcctccgccacttcctggaggtcttcatggagactcagatgtttcggggcttcatccag
gagcgggagctgcgccggcaggatgccaaaggtctgtttgaggtccgagcccaagagtat
ctggaaacactccccagtggagagcacagcggtgtcaataagttcctgaagggactagct
ctcaccagcgaccctcacagaaacacaaaagggaggggcgccgacctcaacaatggccca
gaggggccatactgcctggcaggggttctcaacctttag