FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7971, 290 aa
  1>>>pF1KB7971 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8579+/-0.000747; mu= 12.5804+/- 0.045
 mean_var=71.6956+/-14.303, 0's: 0 Z-trim(108.8): 12  B-trim: 35 in 1/49
 Lambda= 0.151470
 statistics sampled from 10422 (10427) to 10422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.32), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS14167.1 PIR gene_id:8544|Hs108|chrX            ( 290) 1979 441.3 3.9e-124


>>CCDS14167.1 PIR gene_id:8544|Hs108|chrX                 (290 aa)
 initn: 1979 init1: 1979 opt: 1979  Z-score: 2342.0  bits: 441.3 E(32554): 3.9e-124
Smith-Waterman score: 1979; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB7 MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGSSKKVTLSVLSREQSEGVGARVRRSIGRPELKNLDPFLLFDEFKGGRPGGFPDHPHRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FETVSYLLEGGSMAHEDFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVNL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB7 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IAGEPLREPVIQHGPFVMNTNEEISQAILDFRNAKNGFERAKTWKSKIGN
              250       260       270       280       290




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:47:22 2016 done: Sat Nov  5 14:47:23 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]