Result of FASTA (omim) for pF1KB7929
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7929, 352 aa
  1>>>pF1KB7929 352 - 352 aa - 352 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5695+/-0.00036; mu= 16.3582+/- 0.023
 mean_var=92.5742+/-18.446, 0's: 0 Z-trim(115.9): 120  B-trim: 211 in 1/55
 Lambda= 0.133300
 statistics sampled from 26539 (26674) to 26539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.313), width:  16
 Scan time:  8.270

The best scores are:                                      opt bits E(85289)
NP_775847 (OMIM: 601332) homeobox protein Mohawk [ ( 352) 2341 460.2 3.1e-129
XP_016871595 (OMIM: 601332) PREDICTED: homeobox pr ( 352) 2341 460.2 3.1e-129
XP_016871594 (OMIM: 601332) PREDICTED: homeobox pr ( 352) 2341 460.2 3.1e-129
NP_001229631 (OMIM: 601332) homeobox protein Mohaw ( 352) 2341 460.2 3.1e-129
XP_016871597 (OMIM: 601332) PREDICTED: homeobox pr ( 291) 1949 384.7 1.3e-106
XP_016871596 (OMIM: 601332) PREDICTED: homeobox pr ( 295) 1874 370.3 2.9e-102
NP_005844 (OMIM: 606195,611174) iroquois-class hom ( 483)  285 64.9 4.1e-10
NP_001239126 (OMIM: 606195,611174) iroquois-class  ( 482)  282 64.4 6.2e-10
XP_011512281 (OMIM: 606198) PREDICTED: iroquois-cl ( 471)  278 63.6   1e-09
NP_001127694 (OMIM: 606198) iroquois-class homeodo ( 471)  278 63.6   1e-09
NP_150366 (OMIM: 606198) iroquois-class homeodomai ( 471)  278 63.6   1e-09
XP_011521111 (OMIM: 606195,611174) PREDICTED: iroq ( 413)  277 63.3 1.1e-09
XP_005256194 (OMIM: 606196) PREDICTED: iroquois-cl ( 445)  272 62.4 2.2e-09
NP_077311 (OMIM: 606196) iroquois-class homeodomai ( 446)  272 62.4 2.2e-09
NP_057442 (OMIM: 606199) iroquois-class homeodomai ( 519)  266 61.3 5.5e-09
NP_001265563 (OMIM: 606199) iroquois-class homeodo ( 519)  266 61.3 5.5e-09
NP_001265561 (OMIM: 606199) iroquois-class homeodo ( 519)  266 61.3 5.5e-09
NP_077312 (OMIM: 612985) iroquois-class homeodomai ( 501)  264 60.9   7e-09
XP_005256196 (OMIM: 612985) PREDICTED: iroquois-cl ( 529)  264 60.9 7.3e-09
NP_001265564 (OMIM: 606199) iroquois-class homeodo ( 545)  260 60.2 1.3e-08
NP_001265562 (OMIM: 606199) iroquois-class homeodo ( 545)  260 60.2 1.3e-08
XP_016865334 (OMIM: 606197) PREDICTED: iroquois-cl ( 449)  256 59.3 1.9e-08
NP_077313 (OMIM: 606197) iroquois-class homeodomai ( 480)  256 59.3   2e-08
NP_001273187 (OMIM: 602100) homeobox protein PKNOX ( 319)  207 49.8 9.9e-06
NP_001307623 (OMIM: 602100) homeobox protein PKNOX ( 435)  207 49.9 1.3e-05
NP_004562 (OMIM: 602100) homeobox protein PKNOX1 i ( 436)  207 49.9 1.3e-05
NP_775301 (OMIM: 142946,602630) homeobox protein T ( 252)  193 47.0 5.4e-05
NP_001265615 (OMIM: 142946,602630) homeobox protei ( 252)  193 47.0 5.4e-05
XP_011524037 (OMIM: 142946,602630) PREDICTED: home ( 252)  193 47.0 5.4e-05
NP_775302 (OMIM: 142946,602630) homeobox protein T ( 252)  193 47.0 5.4e-05
NP_775303 (OMIM: 142946,602630) homeobox protein T ( 252)  193 47.0 5.4e-05
XP_016881448 (OMIM: 142946,602630) PREDICTED: home ( 252)  193 47.0 5.4e-05
NP_777480 (OMIM: 142946,602630) homeobox protein T ( 252)  193 47.0 5.4e-05
NP_003235 (OMIM: 142946,602630) homeobox protein T ( 272)  193 47.0 5.7e-05
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272)  193 47.0 5.7e-05
NP_001265613 (OMIM: 142946,602630) homeobox protei ( 272)  193 47.0 5.7e-05
NP_775300 (OMIM: 142946,602630) homeobox protein T ( 272)  193 47.0 5.7e-05
NP_001265611 (OMIM: 142946,602630) homeobox protei ( 275)  193 47.0 5.8e-05
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286)  193 47.0 5.9e-05
NP_733796 (OMIM: 142946,602630) homeobox protein T ( 401)  193 47.2 7.6e-05
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX  ( 241)  187 45.8 0.00012
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339)  184 45.4 0.00022
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339)  184 45.4 0.00022
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339)  184 45.4 0.00022
NP_001186442 (OMIM: 607294) homeobox protein TGIF2 ( 237)  181 44.7 0.00026
NP_001186444 (OMIM: 607294) homeobox protein TGIF2 ( 237)  181 44.7 0.00026
NP_068581 (OMIM: 607294) homeobox protein TGIF2 [H ( 237)  181 44.7 0.00026
NP_001186443 (OMIM: 607294) homeobox protein TGIF2 ( 237)  181 44.7 0.00026
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443)  184 45.5 0.00027
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472)  184 45.5 0.00029


>>NP_775847 (OMIM: 601332) homeobox protein Mohawk [Homo  (352 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 2441.2  bits: 460.2 E(85289): 3.1e-129
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB7 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
              310       320       330       340       350  

>>XP_016871595 (OMIM: 601332) PREDICTED: homeobox protei  (352 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 2441.2  bits: 460.2 E(85289): 3.1e-129
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB7 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
              310       320       330       340       350  

>>XP_016871594 (OMIM: 601332) PREDICTED: homeobox protei  (352 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 2441.2  bits: 460.2 E(85289): 3.1e-129
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB7 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
              310       320       330       340       350  

>>NP_001229631 (OMIM: 601332) homeobox protein Mohawk [H  (352 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 2441.2  bits: 460.2 E(85289): 3.1e-129
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 352 aa overlap (1-352:1-352)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
              250       260       270       280       290       300

              310       320       330       340       350  
pF1KB7 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF
              310       320       330       340       350  

>>XP_016871597 (OMIM: 601332) PREDICTED: homeobox protei  (291 aa)
 initn: 1949 init1: 1949 opt: 1949  Z-score: 2034.9  bits: 384.7 E(85289): 1.3e-106
Smith-Waterman score: 1949; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGESAANRKGPSK
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
XP_016 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLENGSNKGES         
              250       260       270       280       290          

              310       320       330       340       350  
pF1KB7 DDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF

>>XP_016871596 (OMIM: 601332) PREDICTED: homeobox protei  (295 aa)
 initn: 1873 init1: 1873 opt: 1874  Z-score: 1956.9  bits: 370.3 E(85289): 2.9e-102
Smith-Waterman score: 1874; 98.6% identity (99.0% similar) in 287 aa overlap (1-286:1-285)

               10        20        30        40        50        60
pF1KB7 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNTIVFNKLSGAVLFEDGGASERERGGRPYSGVLDSPHARPEVGIPDGPPLKDNLGLRHR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FANARRRLKNTVRQPDLSWALRIKLYNKYVQGNAERLSVSSDDSCSEDGENPPRTHMNEG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSSLLNRYLNDSLRHVMATNTT
              190       200       210       220       230       240

              250       260       270       280        290         
pF1KB7 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRTDTLEN-GSNKGESAANRKGPS
       :::::::::::::::::::::::::::::::::::::::  .:: ::             
XP_016 MMGKTRQRNHSGSFSSNEFEEELVSPSSSETEGNFVYRT--VENLGSLSEDSWDFLK   
              250       260       270         280       290        

     300       310       320       330       340       350  
pF1KB7 KDDTYWKEINAAMALTNLAQGKDKLQGTTSCIIQKSSHIAEVKTVKVPLVQQF

>>NP_005844 (OMIM: 606195,611174) iroquois-class homeodo  (483 aa)
 initn: 268 init1: 244 opt: 285  Z-score: 302.5  bits: 64.9 E(85289): 4.1e-10
Smith-Waterman score: 285; 29.7% identity (56.6% similar) in 219 aa overlap (6-216:45-256)

                                        10           20        30  
pF1KB7                          MNTIVFNKLSGAVLFE---DGGASERERGGRPYSG
                                     :.  .:.. :     :  :. . :. : ..
NP_005 LALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADPAAA
           20        30        40        50        60        70    

             40         50         60          70        80        
pF1KB7 VLDSPHARPEVGIP-DGPP-LKDNLGLRHRRT--GARQNGGKVRHKRQALQDMARPLKQW
       .  .  .   :: : :  : .  .:: .   .  :.   :  . ....: .: .  :: :
NP_005 AAAAFSSY--VGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPA-YRKNATRDATATLKAW
           80          90       100       110        120       130 

       90       100       110       120       130       140        
pF1KB7 LYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNK
       : .:: :::::: :::.::. ..:::.:::.::::::::::   ..  ..:. : .  ..
NP_005 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK---KENKMTWTPRNRSEDE
             140       150       160       170          180        

      150       160       170       180       190       200        
pF1KB7 YVQGNAERLSVSSDDSCSEDGENPPRTHMNEGGYNTPVHHPVIKSENSVIKAGVRPESRA
         . : .  . . :.  . . .. :.   . :: .  .     . ..    :: . :.  
NP_005 EEEENIDLEKNDEDEPQKPEDKGDPEGP-EAGGAEQKAASGCERLQGPPTPAGKETEGSL
      190       200       210        220       230       240       

      210        220       230       240       250       260       
pF1KB7 SE-DYVAPPKYKSSLLNRYLNDSLRHVMATNTTMMGKTRQRNHSGSFSSNEFEEELVSPS
       :. :.  ::                                                   
NP_005 SDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV
       250       260       270       280       290       300       

>>NP_001239126 (OMIM: 606195,611174) iroquois-class home  (482 aa)
 initn: 268 init1: 244 opt: 282  Z-score: 299.4  bits: 64.4 E(85289): 6.2e-10
Smith-Waterman score: 282; 29.7% identity (56.6% similar) in 219 aa overlap (6-216:45-255)

                                        10           20        30  
pF1KB7                          MNTIVFNKLSGAVLFE---DGGASERERGGRPYSG
                                     :.  .:.. :     :  :. . :. : ..
NP_001 LALYSCPAYSTSVISGPRTDELGRSSSGSAFSPYAGSTAFTAPSPGYNSHLQYGADPAAA
           20        30        40        50        60        70    

             40         50         60          70        80        
pF1KB7 VLDSPHARPEVGIP-DGPP-LKDNLGLRHRRT--GARQNGGKVRHKRQALQDMARPLKQW
       .  .  .   :: : :  : .  .:: .   .  :.   :  . ....: .: .  :: :
NP_001 AAAAFSSY--VGSPYDHTPGMAGSLGYHPYAAPLGSYPYGDPA-YRKNATRDATATLKAW
           80          90       100       110        120       130 

       90       100       110       120       130       140        
pF1KB7 LYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNK
       : .:: :::::: :::.::. ..:::.:::.::::::::::   ..  ..:. : .  ..
NP_001 LNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK---KENKMTWTPRNRSEDE
             140       150       160       170          180        

      150       160       170       180       190       200        
pF1KB7 YVQGNAERLSVSSDDSCSEDGENPPRTHMNEGGYNTPVHHPVIKSENSVIKAGVRPESRA
         . : .  . . :.  . . .. :.    :.: .  .     . ..    :: . :.  
NP_001 EEEENIDLEKNDEDEPQKPEDKGDPEGP--EAGAEQKAASGCERLQGPPTPAGKETEGSL
      190       200       210         220       230       240      

      210        220       230       240       250       260       
pF1KB7 SE-DYVAPPKYKSSLLNRYLNDSLRHVMATNTTMMGKTRQRNHSGSFSSNEFEEELVSPS
       :. :.  ::                                                   
NP_001 SDSDFKEPPSEGRLDALQGPPRTGGPSPAGPAAARLAEDPAPHYPAGAPAPGPHPAAGEV
        250       260       270       280       290       300      

>>XP_011512281 (OMIM: 606198) PREDICTED: iroquois-class   (471 aa)
 initn: 273 init1: 244 opt: 278  Z-score: 295.4  bits: 63.6 E(85289): 1e-09
Smith-Waterman score: 278; 44.0% identity (69.7% similar) in 109 aa overlap (73-180:117-219)

             50        60        70        80        90       100  
pF1KB7 VGIPDGPPLKDNLGLRHRRTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTE
                                     ....: .: .  :: :: .:: :::::: :
XP_011 YDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRKNATRDATATLKAWLNEHRKNPYPTKGE
         90       100       110       120       130       140      

            110       120       130       140       150        160 
pF1KB7 KILLALGSQMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNKYV-QGNAERLSVSS
       ::.::. ..:::.:::.::::::::::   ..  ..:: : :  ..   .:.: :   :.
XP_011 KIMLAIITKMTLTQVSTWFANARRRLK---KENKMTWAPRNKSEDEDEDEGDATR---SK
        150       160       170          180       190          200

             170       180       190       200       210       220 
pF1KB7 DDSCSEDGENPPRTHMNEGGYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSS
       :.: ..  :.   .  .::                                         
XP_011 DESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDGEKLPCRAGDPLCESGSECKDKY
              210       220       230       240       250       260

>>NP_001127694 (OMIM: 606198) iroquois-class homeodomain  (471 aa)
 initn: 273 init1: 244 opt: 278  Z-score: 295.4  bits: 63.6 E(85289): 1e-09
Smith-Waterman score: 278; 44.0% identity (69.7% similar) in 109 aa overlap (73-180:117-219)

             50        60        70        80        90       100  
pF1KB7 VGIPDGPPLKDNLGLRHRRTGARQNGGKVRHKRQALQDMARPLKQWLYKHRDNPYPTKTE
                                     ....: .: .  :: :: .:: :::::: :
NP_001 YDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRKNATRDATATLKAWLNEHRKNPYPTKGE
         90       100       110       120       130       140      

            110       120       130       140       150        160 
pF1KB7 KILLALGSQMTLVQVSNWFANARRRLKNTVRQPDLSWALRIKLYNKYV-QGNAERLSVSS
       ::.::. ..:::.:::.::::::::::   ..  ..:: : :  ..   .:.: :   :.
NP_001 KIMLAIITKMTLTQVSTWFANARRRLK---KENKMTWAPRNKSEDEDEDEGDATR---SK
        150       160       170          180       190          200

             170       180       190       200       210       220 
pF1KB7 DDSCSEDGENPPRTHMNEGGYNTPVHHPVIKSENSVIKAGVRPESRASEDYVAPPKYKSS
       :.: ..  :.   .  .::                                         
NP_001 DESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAESDGEKLPCRAGDPLCESGSECKDKY
              210       220       230       240       250       260




352 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:39:39 2016 done: Sat Nov  5 14:39:40 2016
 Total Scan time:  8.270 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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