Result of FASTA (omim) for pF1KB7916
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7916, 345 aa
  1>>>pF1KB7916 345 - 345 aa - 345 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3336+/-0.000319; mu= -6.5049+/- 0.020
 mean_var=285.7962+/-58.099, 0's: 0 Z-trim(124.5): 4  B-trim: 643 in 1/61
 Lambda= 0.075866
 statistics sampled from 46275 (46279) to 46275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.543), width:  16
 Scan time:  9.820

The best scores are:                                      opt bits E(85289)
NP_001305837 (OMIM: 600912) transcription factor 1 ( 345) 2477 283.8 3.8e-76
NP_009040 (OMIM: 600912) transcription factor 19 [ ( 345) 2477 283.8 3.8e-76
NP_001070979 (OMIM: 600912) transcription factor 1 ( 345) 2477 283.8 3.8e-76


>>NP_001305837 (OMIM: 600912) transcription factor 19 [H  (345 aa)
 initn: 2477 init1: 2477 opt: 2477  Z-score: 1488.1  bits: 283.8 E(85289): 3.8e-76
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
              250       260       270       280       290       300

              310       320       330       340     
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
              310       320       330       340     

>>NP_009040 (OMIM: 600912) transcription factor 19 [Homo  (345 aa)
 initn: 2477 init1: 2477 opt: 2477  Z-score: 1488.1  bits: 283.8 E(85289): 3.8e-76
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_009 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
              250       260       270       280       290       300

              310       320       330       340     
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
       :::::::::::::::::::::::::::::::::::::::::::::
NP_009 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
              310       320       330       340     

>>NP_001070979 (OMIM: 600912) transcription factor 19 [H  (345 aa)
 initn: 2477 init1: 2477 opt: 2477  Z-score: 1488.1  bits: 283.8 E(85289): 3.8e-76
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
              250       260       270       280       290       300

              310       320       330       340     
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
       :::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
              310       320       330       340     




345 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:37:22 2016 done: Sat Nov  5 14:37:23 2016
 Total Scan time:  9.820 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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