Result of FASTA (ccds) for pF1KB6285
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6285, 862 aa
  1>>>pF1KB6285 862 - 862 aa - 862 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9966+/-0.00113; mu= -0.7925+/- 0.068
 mean_var=209.8332+/-43.165, 0's: 0 Z-trim(109.7): 54  B-trim: 338 in 2/51
 Lambda= 0.088540
 statistics sampled from 11046 (11091) to 11046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.341), width:  16
 Scan time:  4.810

The best scores are:                                      opt bits E(32554)
CCDS42421.1 TAF4B gene_id:6875|Hs108|chr18         ( 862) 5409 704.3 2.4e-202
CCDS77170.1 TAF4B gene_id:6875|Hs108|chr18         ( 867) 5389 701.7 1.4e-201
CCDS33500.1 TAF4 gene_id:6874|Hs108|chr20          (1085) 1210 168.0 8.4e-41


>>CCDS42421.1 TAF4B gene_id:6875|Hs108|chr18              (862 aa)
 initn: 5409 init1: 5409 opt: 5409  Z-score: 3746.3  bits: 704.3 E(32554): 2.4e-202
Smith-Waterman score: 5409; 100.0% identity (100.0% similar) in 862 aa overlap (1-862:1-862)

               10        20        30        40        50        60
pF1KB6 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 KQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQASPTQKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQASPTQKN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 RIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGAL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB6 QKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB6 DTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQ
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB6 IQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDL
              790       800       810       820       830       840

              850       860  
pF1KB6 IFCMEQEREMKYSRALYLALLK
       ::::::::::::::::::::::
CCDS42 IFCMEQEREMKYSRALYLALLK
              850       860  

>>CCDS77170.1 TAF4B gene_id:6875|Hs108|chr18              (867 aa)
 initn: 5395 init1: 3306 opt: 5389  Z-score: 3732.5  bits: 701.7 E(32554): 1.4e-201
Smith-Waterman score: 5389; 99.4% identity (99.4% similar) in 867 aa overlap (1-862:1-867)

               10        20        30        40        50        60
pF1KB6 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PLRSPVGTLVTKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SNSGPLMLVSPQQTVTRAETTSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LAQIGTTVVTTVPKPSSVQSVAVPTSVVTVTPGKPLNTVTTLKPSSLGASSTPSNEPNLK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAIC
              430       440       450       460       470       480

              490       500       510       520       530          
pF1KB6 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQL-----VVQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::     :::::
CCDS77 LPSVKPVVSSAGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLFSLFQVVQQP
              490       500       510       520       530       540

         540       550       560       570       580       590     
pF1KB6 SGGNEKQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SGGNEKQVTTISHSSTLTIQKCGQKTMPVNTIIPTSQFPPASILKQITLPGNKILSLQAS
              550       560       570       580       590       600

         600       610       620       630       640       650     
pF1KB6 PTQKNRIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PTQKNRIKENVTSCFRDEDDINDVTSMAGVNLNEENACILATNSELVGTLIQSCKDEPFL
              610       620       630       640       650       660

         660       670       680       690       700       710     
pF1KB6 FIGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FIGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLTAIAQHRMTTYKASEN
              670       680       690       700       710       720

         720       730       740       750       760       770     
pF1KB6 YILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQ
              730       740       750       760       770       780

         780       790       800       810       820       830     
pF1KB6 LELAQIQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LELAQIQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRI
              790       800       810       820       830       840

         840       850       860  
pF1KB6 CLRDLIFCMEQEREMKYSRALYLALLK
       :::::::::::::::::::::::::::
CCDS77 CLRDLIFCMEQEREMKYSRALYLALLK
              850       860       

>>CCDS33500.1 TAF4 gene_id:6874|Hs108|chr20               (1085 aa)
 initn: 1595 init1: 895 opt: 1210  Z-score: 846.0  bits: 168.0 E(32554): 8.4e-41
Smith-Waterman score: 1624; 40.5% identity (61.8% similar) in 878 aa overlap (2-862:356-1085)

                                            10        20        30 
pF1KB6                              MPAGLTEPAGAAPPAAVSASGTVTMAPAGAL
                                     ::. :   .:. ::...:: ..  .  :::
CCDS33 SGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQT--LAASGPASTAASMVIGPTMQGAL
         330       340       350       360         370       380   

              40        50        60        70        80        90 
pF1KB6 PVRVESTPVALGAVTKAPVSVCVEPTASQPLRSPVGTLVTKVAPVSAPPKVSSGPRLPAP
       :  .   : : :. :  : ..    : :   :.:..:  :.   ..  : : . :::: :
CCDS33 PSPAAVPPPAPGTPTGLPKGAAGAVTQSLS-RTPTAT--TSGIRATLTPTVLA-PRLPQP
           390       400       410          420       430          

             100       110       120       130             140     
pF1KB6 QIVAVKAPNTTTIQFPANLQLPPGTVLIKSNSGPLMLVSPQQTVTR------AETTSNIT
               : :.::   :.::::: ::..:..: :... :::....      :.  ....
CCDS33 P------QNPTNIQ---NFQLPPGMVLVRSENGQLLMI-PQQALAQMQAQAHAQPQTTMA
     440                450       460        470       480         

         150       160       170       180       190       200     
pF1KB6 SRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKKLAQIGTTVVTTVPKPSSVQSVAVPT
        :::.:..   :.: ::   .. .: .  :::        ::..  :   :..:... :.
CCDS33 PRPATPTSAPPVQISTVQAPGTPIIAR-QVTP--------TTIIKQV---SQAQTTVQPS
     490       500       510        520                  530       

         210         220        230       240       250       260  
pF1KB6 SVVTVTPG-KP-LNTVTTLKPSSLG-ASSTPSNEPNLKAENSAAVQINLSPTMLENVKKC
       ...  .:: .: :    . . .::: :... .. :.  . ......   . :: ::::::
CCDS33 ATLQRSPGVQPQLVLGGAAQTASLGTATAVQTGTPQRTVPGATTTSSAATETM-ENVKKC
       540       550       560       570       580       590       

            270       280       290       300       310       320  
pF1KB6 KNFLAMLIKLACSGSQSPEMGQNVKKLVEQLLDAKIEAEEFTRKLYVELKSSPQPHLVPF
       ::::. ::::: ::.:: : . :::.::..:::.:::::.:: .:: ::.:::::.::::
CCDS33 KNFLSTLIKLASSGKQSTETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPF
        600       610       620       630       640       650      

            330       340       350       360       370       380  
pF1KB6 LKKSVVALRQLLPNSQSFIQQCVQQTSSDMVIATCTTTVTTSPVVTTTVSSSQSEKSIIV
       ::.:. ::::: :.: .::::  ::       ::   :. :. :....:. . .. .  :
CCDS33 LKRSLPALRQLTPDSAAFIQQSQQQPPPPTSQAT---TALTAVVLSSSVQRTAGKTAATV
        660       670       680       690          700       710   

            390       400       410       420       430       440  
pF1KB6 SGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAATGGTTAGTGLLQTSKPLVTSVA
       ..:  : ..:      :. :                     : .:.:      ::: .  
CCDS33 TSALQPPVLS------LTQP---------------------TQVGVGKQGQPTPLVIQ--
           720                                  730       740      

            450       460       470       480       490       500  
pF1KB6 NTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAICLPSVKPVVSSAGTTSDKPVIGT
               :: ::                    :: :  :.:        : .. :... 
CCDS33 --------QPPKP--------------------GALIRPPQV--------TLTQTPMVA-
                                      750               760        

            510       520       530       540       550       560  
pF1KB6 PVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNEKQVTTISHSSTLTIQKCGQKTM
            : ::   .   .  :: .:.. :   ::                           
CCDS33 -----LRQPHNRIMLTT--PQQIQLNPL---QP---------------------------
            770         780          790                           

            570       580       590          600       610         
pF1KB6 PVNTIIPTSQFPPASILKQITLPGNKILSL---QASPTQKNRIKENVTSCFRDEDDINDV
            .:        ..:  .:::.: ::    ::. .:::..::   . :::.::::::
CCDS33 -----VP--------VVKPAVLPGTKALSAVSAQAAAAQKNKLKEPGGGSFRDDDDINDV
                           800       810       820       830       

     620       630       640       650       660       670         
pF1KB6 TSMAGVNLNEENACILATNSELVGTLIQSCKDEPFLFIGALQKRILDIGKKHDITELNSD
       .:::::::.::.: :::::::::::: .::::: ::. . ::.:::.::::: ::::. :
CCDS33 ASMAGVNLSEESARILATNSELVGTLTRSCKDETFLLQAPLQRRILEIGKKHGITELHPD
       840       850       860       870       880       890       

     680       690       700       710       720       730         
pF1KB6 AVNLISQATQERLRGLLEKLTAIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQR
       .:. .:.:::.::..:.::..  ::..  .:: .. :   ::.:.::::.:.:::.::::
CCDS33 VVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQR
       900       910       920       930       940       950       

     740       750       760       770       780       790         
pF1KB6 KDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDANLTALAAIGPRKK
       :: .:::.:..:::::: .::::::::::::::.:: ::::...::::::::::::::::
CCDS33 KDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKK
       960       970       980       990      1000      1010       

     800            810       820       830       840       850    
pF1KB6 RPLE-----SGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDLIFCMEQEREMKYSR
       : ..     :: ::   . .. :.:.. . .:. : ::::. :::::::.:.::: ..: 
CCDS33 RKVDCPGPGSGAEGSGPGSVVPGSSGVGTPRQFTRQRITRVNLRDLIFCLENERETSHSL
      1020      1030      1040      1050      1060      1070       

          860  
pF1KB6 ALYLALLK
        :: :.::
CCDS33 LLYKAFLK
      1080     




862 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:32:48 2016 done: Sat Nov  5 14:32:49 2016
 Total Scan time:  4.810 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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