GENSCAN 1.0	Date run:  5-Nov-116	Time: 14:21:37

Sequence gi568815589r:3125045_3495588 : 370544 bp : 36.22% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   2201   2493  293  0  2   78   42   131 0.637   2.02
 1.02 PlyA +   3300   3305    6                               1.05

 2.02 PlyA -   3778   3773    6                               1.05
 2.01 Sngl -  20634  19798  837  0  0   66   42   315 0.827  20.18
 2.00 Prom -  22522  22483   40                              -3.65

 3.00 Prom +  22916  22955   40                              -5.65
 3.01 Init +  26346  26538  193  2  1   95   81    37 0.144   2.88
 3.02 Intr +  49354  49465  112  2  1   82   93    47 0.010   3.12
 3.03 Term +  55803  56430  628  0  1   84   43   280 0.018  15.94
 3.04 PlyA +  58214  58219    6                               1.05

 4.05 PlyA -  58470  58465    6                               1.05
 4.04 Term -  61160  60979  182  0  2   74   54   149 0.984   6.89
 4.03 Intr -  73658  73459  200  1  2   -9   80   173 0.135   4.87
 4.02 Intr -  75978  75881   98  0  2   76   31   112 0.265   2.19
 4.01 Init -  77227  77126  102  1  0   52  109    50 0.495   3.79
 4.00 Prom -  90091  90052   40                              -5.05

 5.14 PlyA -  90098  90093    6                               1.05
 5.13 Term - 100236  99998  239  1  2   67   43   218 0.933  10.55
 5.12 Intr - 103845 103803   43  0  1   48  116    43 0.004  -0.01
 5.11 Intr - 123141 122988  154  2  1   58   94   176 0.828  14.35
 5.10 Intr - 132155 131947  209  2  2   79   69   198 0.855  13.95
 5.09 Intr - 138040 137891  150  1  0   39   66   155 0.725   7.84
 5.08 Intr - 141261 141164   98  1  2   79   69    73 0.925   3.31
 5.07 Intr - 145481 145327  155  1  2   29   94   173 0.982  10.79
 5.06 Intr - 146074 145959  116  1  2   82   55    58 0.533   0.23
 5.05 Intr - 150568 150456  113  2  2   62  107    80 0.503   6.48
 5.04 Intr - 152417 152296  122  1  2   76   77    78 0.975   4.72
 5.03 Intr - 163206 163087  120  2  0    5   69   126 0.635   1.09
 5.02 Intr - 168214 168033  182  1  2   85   78   122 0.981   8.64
 5.01 Init - 176570 176502   69  2  0   64  103    74 0.895   7.60
 5.00 Prom - 179615 179576   40                              -4.85

 6.00 Prom + 179737 179776   40                              -6.05
 6.01 Init + 184868 184979  112  1  1   57   41   134 0.922   6.02
 6.02 Intr + 184996 185114  119  2  2   16   92   114 0.405   3.86
 6.03 Term + 188429 188665  237  1  0   79   54   338 0.950  24.68
 6.04 PlyA + 189615 189620    6                               1.05

 7.00 Prom + 189785 189824   40                              -6.15
 7.01 Sngl + 191886 192713  828  2  0   86   42   191 0.705   9.82
 7.02 PlyA + 194782 194787    6                               1.05

 8.05 PlyA - 195191 195186    6                               1.05
 8.04 Term - 199051 198938  114  1  0  116   38    22 0.524  -2.41
 8.03 Intr - 205473 205215  259  2  1   72   98   194 0.768  15.34
 8.02 Intr - 221720 221623   98  2  2   78  101    87 0.032   6.89
 8.01 Init - 270544 270428  117  1  0   89  110    99 0.493  12.46
 8.00 Prom - 271481 271442   40                              -3.25

 9.00 Prom + 287527 287566   40                              -5.05
 9.01 Sngl + 294851 295249  399  1  0   40   47   200 0.564   7.11
 9.02 PlyA + 296353 296358    6                               1.05

10.04 PlyA - 296365 296360    6                               1.05
10.03 Term - 323472 323310  163  2  1   68   47   125 0.470   2.83
10.02 Intr - 331196 331012  185  2  2   82   56    92 0.201   3.06
10.01 Init - 332678 332670    9  2  0   72   99     1 0.405   0.25
10.00 Prom - 346154 346115   40                              -5.65

11.02 PlyA - 347028 347023    6                               1.05
11.01 Sngl - 350963 350703  261  2  0   58   44   195 0.766   7.01

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  56400  56233  168  0  0   91   57   258 0.811  20.58
S.002 Init -  61333  61291   43  1  1   92   92    39 0.877   5.33
S.003 Init - 103863 103803   61  0  1   55  116    47 0.974   5.66
S.004 Init + 110271 110352   82  2  1   48   94   109 0.915   8.68
S.005 Term + 113493 113608  116  1  2   81   32   104 0.949   1.85
S.006 Term - 121393 121346   48  1  0  104   43    50 0.822  -1.57


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_1|97_aa
XNSSAKPWDLMEQTLKTFARSIMASLPFLLKYWNSLSVSSLLGYIAIGDYPLCSPDTSLE
PEAPRLLSHIPLPFHLLLLLHVCNLIISPGVSSAFRL

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_1|294_bp
nataactcctctgcaaaaccttgggatttgatggagcaaactctgaaaacctttgcgcgt
agcatcatggccagtctaccatttctgctaaaatactggaactcgttgtctgtatcttca
ctgttgggttatatcgctattggggattatcctctgtgctcaccggacacatccctagag
ccagaggctcctagactcctatcccacattcctcttcctttccacctgctcctgctcctg
catgtatgcaacttaattatttctcctggtgtttcctctgcatttaggctatag

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_2|278_aa
MKKDKGGHYIMVKGLIQQEEVTILNIYAPNIGTPRIIKKVFRDLQRDLDSYTIAVGDFNT
ALSILDRSTRQKINKDIQELNSALDQADLIDIYRTLHPKSTEYTIFSAPQRTYSKIDHII
GSKTLLSKCRRREMITNSFSDHSAIKLELRIKKLTQNHTTTWKLNNLLVSDYWVNNEIKA
EINKFCGMRTKYQNLWDTAKAMFRGIFIALNVHRRKQERSNVDTLTSQLKELEKQEQTNS
KASRRQEMTKIRAELKEIETRKTLQKINESRGWLFLKD

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_2|837_bp
atgaaaaaagacaaaggagggcattacataatggtaaagggattaattcaacaagaagag
gtaactatcctaaatatatatgcacccaatataggaacacccagaatcataaagaaagtt
tttagagacctacaaagagacttagactcctacacaatagcagtgggcgactttaacacc
gcactgtcaatattagacagatcaacaagacagaaaattaacaaggatattcaggagttg
aactcagctttagaccaagcagacctaatagacatctacagaactctccaccccaaatca
acagaatatacgatcttctcagcaccacagcgcacttattctaaaattgatcacataatt
ggaagcaaaacactcctcagcaaatgcagaagaagggaaatgataacaaacagtttctct
gaccacagtgcaattaaattagaactcaggattaagaaactcactcaaaaccacacaact
acatggaaactgaacaacctgctcgtgagtgactactgggtaaataatgaaattaaggca
gaaataaataagttctgtgggatgagaacaaagtaccagaatctctgggacacagcaaaa
gcaatgtttagagggatatttatagcactaaatgtccataggagaaagcaggaaagatct
aatgtcgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacaaattca
aaagctagcagaagacaagaaatgactaagatcagagcagaactgaaggagatagagaca
cgaaaaacccttcaaaaaatcaatgaatccaggggctggctttttttaaaagattaa

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_3|310_aa
MDVPTEVMQAKPCTVTNLNIGRMPYVHSKTQEDRRLLRNHLEAISHSSPYFSWEAVSFLL
PPSSVTSLFPVLTLKIKGRLTMLSTLYSQDSHTSSSSKWHSLPKLVLRARLPTATKFSES
NKDTTGSIWTFSGQERQPGISLQRVAGDAHLLWDSRSAQPALLHARAGQHSAPRVHARRP
DTRSLVHAQRAHTPALHARAMGAHTRIPTRAHTRAPITALARKRAATSEWDSACGGSARY
FTISHLRVRLLPCWLHLQPQRFPAGAPELSRPKELLLRHKAQLHTVLQARGDPGRSRGRS
HGPSASAPEP

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_3|933_bp
atggatgtacccacagaggtcatgcaagcaaagccttgtactgtaactaatctcaatatt
ggaagaatgccctatgttcattccaaaacacaagaagataggaggctcctgaggaaccat
cttgaagccatctcccattcatctccctatttttcttgggaggctgtcagtttcctactg
cctccaagttctgtaacctctctgtttccagtattaactctgaaaatcaagggccgacta
accatgctgtctacactttactcacaagatagccatacctcttcttcttcgaagtggcat
tcactgccgaagctggttctcagagctcgtctgcctacagctactaagttctctgagagc
aataaagatacgacgggatccatctggacgttttccggacaggagaggcagcccggcatt
tcccttcagagagttgctggggatgcacacctgctctgggacagccggagtgcgcaaccc
gcacttctacacgcgcgcgccgggcaacatagcgcaccgcgggtacacgcacgccgaccg
gacacacgcagtctcgtacacgcccaacgagcgcacacacccgcactccatgcacgcgcg
atgggcgcacacactcgcatccctacacgtgcacacacccgcgctccaattaccgcgcta
gcgcgcaaaagagccgcaacttccgagtgggactcggcatgcgggggcagtgcccggtac
ttcaccatcagtcaccttcgcgtccgcctcctcccctgctggttgcacctccagccgcag
agatttccggctggggcaccagaactgtccaggccgaaagagctgctcctccgtcacaaa
gcgcagttgcacactgtactgcaggcgcgcggggacccgggccggagccggggtcgcagc
catggtccaagcgcctctgctcctgagccctag

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_4|193_aa
MSRPPSGVIAGEVDWRSGRCGIEVYHFHNNINLSLRPEGPRGDADGETVTPFLQPQLPKK
GLLSLIKCSIEWGTKVCDKGSSRAEILGVSSQQHSLSGKSTWQNLSWCFLNSQGQCGKPS
CTKYLRRCSGQLTVCKCNTDPVKGLLNKANSLLPGVSRVFFQLPNPHPPTLLRPQLELDP
NPDCDTGVVQMLT

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_4|582_bp
atgagcaggcctccaagtggtgtcatagctggagaggtggattggcggagtggcagatgt
gggatcgaagtctatcactttcataacaacatcaacctctcgctcagacctgaaggaccc
agaggggatgctgatggggaaacggtcactccattcctgcagccccaattacccaagaag
gggcttctctcgctcatcaagtgctcgattgaatggggaaccaaggtctgtgacaaaggc
agctcccgtgctgagattctaggcgtcagcagccagcagcactcgctgtcaggaaagagc
acgtggcagaacctaagctggtgcttcctcaactcccaaggccaatgtggtaaaccatcc
tgcacaaaatacctccgcaggtgttcaggacaactgacagtgtgtaaatgtaacactgac
cctgtgaaggggctgctgaataaagccaactctcttttacctggtgtctctcgagtgttc
ttccagctccccaacccacatccacccactctcctcagacctcagctggagctggacccc
aaccctgattgtgacactggagttgtacagatgctcacttga

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_5|589_aa
MAIETLQKSDGLSTHRSSLLNSHLQWLLDNYETAEGVSLPRSTLYNHYLRHCQEHKLDPV
NAASFGKLIRSIFMGLRTRRLGTRGNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQ
QKQRYKPMQKVDGVADGFTGSGQQTGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEISS
LPDGTTFEDIKSLQSLYREHCEAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITES
SNLSEIESRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIR
NFAKSLEGWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQIN
QMLSDLNRVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQA
LKPYEGRPSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEH
RVAQATGETPIAVMGEFGDLNAVSPGNLDKDEGSEVESEMDEELDDSSEPQAKREKTELS
QAFPVGCMQPVLETGVQPSLLNPIHSEHIVTSTQTIRQCSATGNTYTAV

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_5|1770_bp
atggcgattgagacgctgcaaaagtctgacggtctgtccactcacagaagctctcttctc
aacagccatctccagtggctgttggacaattatgagacagcagaaggagtgagccttccc
agaagcactctgtacaaccactaccttcgacactgtcaggaacacaaactggacccagtc
aatgctgcctcttttggaaaattaataagatcaatttttatggggctacgaaccaggaga
ttgggcactagaggaaactccaaataccactactatgggattcgtgtcaagccagattcc
cctcttaatcgtctgcaagaagacatgcagtatatggctatgagacaacaacccatgcaa
cagaaacaaaggtacaagcctatgcagaaagtggatggggttgcagatggtttcacagga
agtggtcaacagacaggcacatctgttgagcaaactgtaattgcccaaagccaacatcat
caacagtttttagatgcatctcgagcacttccagagtttggagaagttgaaatctcttct
ctgccagatggtactacctttgaggatatcaagtcactgcagagtctttatagagagcac
tgtgaggcaatattggacgttgttgtgaatcttcaatttagcctgatagaaaaattgtgg
caaacattctggcgctattctccctctactccaactgatggcactaccattaccgaatcg
agcaatctgagtgaaatagaaagtcgacttccgaaagcaaagctgataactctgtgcaaa
catgagtctatcctgaaatggatgtgtaactgtgaccatgggatgtaccaggctttggtg
gagattctcatccccgacgtccttagacctattcctagtgccttgacccaagccattcga
aattttgcaaaaagccttgaaggttggctttccaatgccatgaacaatattccacagaga
atgatacaaaccaaggttgccgctgtaagtgcctttgcccagactctgcgaagatacacg
tcgcttaatcacctggcccaggcagctcgtgcagtgcttcagaacacttcccaaatcaac
cagatgcttagtgacctcaaccgtgtcgactttgccaatgtccaggagcaggcttcctgg
gtgtgccagtgtgatgacaacatggttcagagactagaaacagacttcaagatgactctt
cagcagcagagcaccctggagcagtgggctgcgtggcttgacaatgtgatgatgcaagca
ctgaaaccctatgaaggaagacccagttttcctaaagccgccaggcagtttctgctaaaa
tggtctttctacagctcaatggttattcgggacttaaccttacgcagtgctgctagcttt
ggctccttccacctgatccgtctactctacgacgaatatatgttttacttagtagaacat
cgtgttgctcaggcaacaggagagactcctatagcagtcatgggcgagtttggtgattta
aatgccgtgtctcctggaaatctggataaagatgaaggcagtgaagtagaaagtgaaatg
gatgaagaactggatgactcttcagagcctcaagccaaaagagagaaaacagagctgagc
caggcatttccagtgggctgcatgcagcctgttctcgagactggcgtgcaaccaagcctc
ctgaatccaattcacagcgagcacattgtcacaagtactcagactatcagacagtgcagc
gctacaggaaatacctacactgcagtctaa

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_6|155_aa
MIPDLERLKVEDHWQNKRTEWGEQGGTKEALCDRLLEVLSPAKSSVKPMPLADASSTSNR
DWLEHRDHLGAVDNAKKERSSPPATEQSWMENNFDELREEDFRRSAITNFSELKEDVRTH
HKEAKNLEKRLDEWLTRINSLEKSLNDLMELKTMA

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_6|468_bp
atgatcccagacctggaaagactgaaggtggaggatcactggcagaataaaaggacagag
tggggagaacaaggtggtacaaaagaggctttgtgtgaccgtcttttagaggtgctttcc
cctgcaaaatcttcagtaaaacctatgccacttgcagatgcttctagtacaagtaatcga
gactggctggagcacagggatcatttaggggcagttgataatgccaagaaggaacgcagc
tccccgccagcaacggaacaaagctggatggagaataattttgacgagttgagagaagaa
gacttcagacgatcggcaataacaaacttctctgagctaaaggaggatgttcgaacccat
cacaaagaagctaaaaaccttgaaaaaagattagacgaatggctaactagaataaacagt
ctagagaaatccttaaatgacctgatggagctgaaaaccatggcatga

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_7|275_aa
MAILPKVIYRFNAIPIKLLLTFFTELEKTTLKFIWNQKRARIAQTILSQKNKAGGIMLPD
FKLYYKATVTKTAWYWNQNRDIDQWNRIEPSEIIPHIYNHLIFDKFDKSKKWGKDSLFNK
WCWENWLATCRKLKLDLFLTPYAKINSRWIKDLNVRPKTVKALEENLGNTIQDIGMGKDF
MTKTPKAMATKAKIDKWVLIKLKSFCTAKETTIRVNRQPTEWEKIFTIYPSDKGLISRIY
KELKTNLQDKIKQPHQKVGKGYEQTLLKRRHLCSQ

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_7|828_bp
atggccatactgcccaaggtaatttatagattcaatgccatccccatcaaactactactg
actttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcc
cgcattgcccagacaatcctaagccaaaagaacaaagctggaggcatcatgctacctgac
ttcaaactatactacaaggctacagtaaccaaaacagcatggtactggaaccaaaacaga
gatatagaccaatggaacagaatagagccctcagaaataataccacacatctataaccat
ctgatctttgacaaatttgacaaaagcaagaaatggggaaaggattccctatttaataaa
tggtgctgggaaaactggctagccacatgtagaaagctgaaactggatctcttccttaca
ccttatgcaaaaattaattcaagatggattaaagacttaaatgttagacctaaaactgta
aaagccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttc
atgactaaaacaccaaaagcaatggcaacaaaagccaaaattgacaaatgggttctaata
aaactaaagagcttctgcacagcaaaagaaactaccatcagagtgaacagacaacctaca
gaatgggagaaaatttttacaatctacccatctgacaaagggctaatatccagaatctac
aaagaacttaaaacaaatttacaagacaaaatcaaacaaccccatcaaaaagtgggcaaa
ggatatgaacagacacttctcaaaagaagacatttatgcagccaatag

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_8|195_aa
MQTSETGSDTGSTVTLQTSVASQAAVPTQVVQQVPVQQQVQQVQTVQQVQHVYPAQVQYV
EGSDTVYTNGAIRTTTYPYTETQMYSQNTGGNYFDTQGSSAQVTTVVSSHSMVGTGGIQM
GVTGGQLISSSGGTYLIGNSMENSGHSVTHTTRASPATANSVPEMKLLRQITMNRLFPTL
NHKLTEGSGPHFQSI

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_8|588_bp
atgcagacatcagagactgggtcggacacaggctcgacagtgaccttacaaacatctgtg
gctagtcaagcagcagtgcctacgcaggtggtacagcaagtaccagtacaacaacaggta
cagcaggtacagactgtgcagcaggtacaacatgtctatcccgctcaggtgcagtatgtg
gaaggaagcgatactgtctataccaatggagcaatccgaacaacaacgtatccttacaca
gagacacagatgtacagccaaaatactggagggaattactttgatactcaagggagttcc
gcccaggtgactaccgtggtctcatcccacagtatggtgggcactggtgggattcagatg
ggcgtcacaggaggacaactcatcagcagctctggaggaacctatctgatcggcaactca
atggagaattctggtcactcagtgacacacacaactcgggcctccccagcgacagccaac
tcagtccctgaaatgaaactcctcagacagattaccatgaaccgtctgtttcctacacta
aatcataaattgactgaaggttctgggcctcattttcaaagcatttaa

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_9|132_aa
MQNWLTWKANRKIPTQPLHVRNQSAFSPPPTALKIVRQFVIVAREGTGGRLAKCGRKNVG
ARSTTCSSELPPSLRPSFSEPAYIKALTMCAAFFQIFALKHTSQQLSPLGRMIKARKALI
HRLSTNRTFYGS

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_9|399_bp
atgcagaactggctcacatggaaggcaaaccgtaaaattccaacacaacctctgcatgtg
agaaatcaatcagctttttctcctcctcctaccgcactcaaaattgtaaggcagtttgtc
atcgtcgcacgtgaaggcacaggagggagactagctaaatgtggcagaaagaacgtcggg
gcccgcagcaccacttgttcctcagaactgcctcccagcctccgaccatccttcagtgag
ccagcgtacattaaagctctcaccatgtgtgctgccttcttccagatttttgcactgaag
cacaccagtcagcagctttcaccacttgggagaatgatcaaggccaggaaagcactcata
cacaggctgagtactaacaggacattctacggttcatga

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_10|118_aa
MILCHGLNVSPPKVRCRNLRANVILFEHGIGHKVMRAPSLVNGSKTPIKTALHSLQERAL
LPSAIRKRNMWVVISCCIVGGPQNGQRTHGDTADVANGFGDVKVEMELFGPFNYRLTL

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_10|357_bp
atgattctctgccatggtttgaatgtgtctcctccaaaagtgagatgtagaaacttaagg
gccaatgtgatactattcgagcatgggattggtcataaggtcatgagggctccttccctt
gtgaatgggagtaaaacccctataaaaacagctttacacagccttcaggagcgtgctctt
ctgccttctgccataagaaaaagaaatatgtgggttgtaataagctgctgtattgtggga
gggcctcagaatggacagaggactcatggtgatacagctgatgtagcaaatggatttggg
gatgtaaaggtcgaaatggaattatttggtccttttaattaccgcttaacactttga

>gi568815589r:3125045_3495588|GENSCAN_predicted_peptide_11|86_aa
MPGQGHQRAPWSSGNASVWEDACCQADCGLVVASVRRENTYYLADWEGESPFPQGSLEKT
LYSTSCGGPDISQACPQLSGGLTVSL

>gi568815589r:3125045_3495588|GENSCAN_predicted_CDS_11|261_bp
atgcctggacagggccaccagagagctccttggtctagcggtaacgccagcgtctgggaa
gatgcctgttgccaagcagactgtggtctagtggtagcgtcagtgcgaagggaaaacacc
tactacttagcagactgggaaggggagtctccctttccccaggggagtttagagaagaca
ctctactccacctcttgtggagggcctgacatcagtcaagcctgcccacagttatctgga
ggcctgactgtctccctgtga